IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
616	 33.10	0	693665..694960	+	431	148267063	-	SaurJH9_0626	-	metal dependent phosphohydrolase
617	 32.94	0	695003..695509	+	168	148267064	-	SaurJH9_0627	-	hypothetical protein
618	 36.20	0	696008..697018	+	336	148267065	-	SaurJH9_0628	-	alcohol dehydrogenase
619	 32.13	0	697294..697710	+	138	148267066	-	SaurJH9_0629	-	hypothetical protein
620	 33.15	0	697707..699368	+	553	148267067	argS	SaurJH9_0630	-	arginyl-tRNA synthetase
621	 28.30	-1	699638..700273	+	211	148267068	-	SaurJH9_0631	-	HhH-GPD family protein
622	 32.09	0	700525..701412	+	295	148267069	-	SaurJH9_0632	-	periplasmic binding protein
623	 31.51	0	701525..702511	+	328	148267070	-	SaurJH9_0633	-	transport system permease protein
624	 30.56	0	702566..703285	+	239	148267071	-	SaurJH9_0634	-	HAD family hydrolase
625	 31.96	0	703269..704069	+	266	148267072	-	SaurJH9_0635	-	alpha/beta hydrolase fold
626	 30.97	0	704205..704711	+	168	148267073	-	SaurJH9_0636	-	hypothetical protein
627	 26.22	-2	704873..705589	+	238	148267074	-	SaurJH9_0637	-	hypothetical protein
628	 29.91	0	705758..706546	+	262	148267075	-	SaurJH9_0638	-	alpha/beta hydrolase fold
629	 27.47	-1	706799..707173	-	124	148267076	-	SaurJH9_0640	-	accessory regulator A-like protein
630	 30.86	0	708121..709050	-	309	148267077	-	SaurJH9_0641	-	hypothetical protein
631	 29.78	-1	709245..709469	-	74	148267078	-	SaurJH9_0642	-	hypothetical protein
632	 31.86	0	709486..709689	-	67	148267079	-	SaurJH9_0643	-	hypothetical protein
633	 30.12	0	709848..710408	+	186	148267080	-	SaurJH9_0644	-	phage integrase family protein
634	 31.96	0	710427..712829	+	800	148267081	-	SaurJH9_0645	-	putative monovalent cation/H+ antiporter subunit A
635	 32.63	0	712816..713241	+	141	148267082	-	SaurJH9_0646	-	putative monovalent cation/H+ antiporter subunit B
636	 30.43	0	713238..713582	+	114	148267083	-	SaurJH9_0647	-	putative monovalent cation/H+ antiporter subunit C
637	 33.47	0	713572..715068	+	498	148267084	-	SaurJH9_0648	-	putative monovalent cation/H+ antiporter subunit D
638	 26.50	-2	715069..715551	+	160	148267085	-	SaurJH9_0649	-	putative monovalent cation/H+ antiporter subunit E
639	 33.00	0	715548..715850	+	100	148267086	-	SaurJH9_0650	-	putative monovalent cation/H+ antiporter subunit F
640	 33.79	0	715825..716262	+	145	148267087	-	SaurJH9_0651	-	putative monovalent cation/H+ antiporter subunit G
641	 31.86	0	716602..718644	+	680	148267088	-	SaurJH9_0652	-	sodium/hydrogen exchanger
642	 30.91	0	718825..720144	-	439	148267089	-	SaurJH9_0653	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
643	 31.61	0	721264..722193	-	309	148267090	-	SaurJH9_0654	-	periplasmic solute binding protein
644	 32.14	0	722190..723026	-	278	148267091	-	SaurJH9_0655	-	ABC-3 protein
645	 33.47	0	723020..723763	-	247	148267092	-	SaurJH9_0656	-	ABC transporter related
646	 30.39	0	723885..724529	+	214	148267093	-	SaurJH9_0657	-	iron dependent repressor
647	 30.81	0	724609..725361	-	250	148267094	-	SaurJH9_0658	-	hypothetical protein
648	 33.73	0	725597..726361	+	254	148267095	-	SaurJH9_0659	-	WecB/TagA/CpsF family glycosyl transferase
649	 34.09	0	726422..727216	-	264	148267096	-	SaurJH9_0660	-	teichoic acids export protein ATP-binding subunit
650	 31.12	0	727563..728375	+	270	148267097	-	SaurJH9_0661	-	ABC-2 type transporter
651	 32.25	0	728474..729577	+	367	148267098	-	SaurJH9_0662	-	CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
652	 32.02	0	729574..730635	+	353	148267099	-	SaurJH9_0663	-	glycosyl transferase family protein
653	 32.33	0	730698..731096	+	132	148267100	-	SaurJH9_0664	-	glycerol-3-phosphate cytidylyltransferase
654	 34.41	0	731213..732508	-	431	148267101	-	SaurJH9_0665	-	Serine-type D-Ala-D-Ala carboxypeptidase
655	 33.10	0	732929..734656	+	575	148267102	-	SaurJH9_0666	-	ABC transporter related
656	 34.23	0	735013..736242	+	409	148267103	-	SaurJH9_0667	-	Na+ dependent nucleoside transporter
657	 23.66	-2	736497..736589	+	30	148267104	-	SaurJH9_0668	-	hypothetical protein
658	 34.05	0	736767..737600	+	277	148267105	-	SaurJH9_0669	-	hypothetical protein
659	 35.09	0	737882..738679	+	265	148267106	-	SaurJH9_0670	-	ABC transporter related
660	 35.92	0	738715..739719	+	334	148267107	-	SaurJH9_0671	-	cell wall anchor domain-containing protein
661	 35.59	0	739716..740732	+	338	148267108	-	SaurJH9_0672	-	transport system permease protein
662	 35.71	0	740966..741934	+	322	148267109	-	SaurJH9_0673	-	dihydroxyacetone kinase, DhaK subunit
663	 35.73	0	741976..742560	+	194	148267110	-	SaurJH9_0674	-	dihydroxyacetone kinase, L subunit
664	 34.71	0	742553..742915	+	120	148267111	-	SaurJH9_0675	-	hypothetical protein
665	 32.53	0	743031..743528	+	165	148267112	-	SaurJH9_0676	-	hypothetical protein
666	 32.96	0	743985..745052	+	355	148267113	-	SaurJH9_0677	-	hypothetical protein
667	 31.13	0	745203..746246	+	347	148267114	-	SaurJH9_0678	-	alpha/beta hydrolase domain-containing protein
668	 27.74	-1	746575..747003	+	142	148267115	-	SaurJH9_0679	-	hypothetical protein
669	 34.71	0	747212..747718	-	168	148267116	-	SaurJH9_0680	-	hypothetical protein
670	 31.82	0	747831..748754	+	307	148267117	-	SaurJH9_0681	-	hypothetical protein
671	 30.67	0	748770..749444	+	224	148267118	-	SaurJH9_0682	-	two component transcriptional regulator
672	 30.74	0	749437..750477	+	346	148267119	-	SaurJH9_0683	-	integral membrane sensor signal transduction histidine kinase
673	 31.36	0	750621..751382	+	253	148267120	-	SaurJH9_0684	-	ABC transporter related
674	 28.36	-1	751372..753261	+	629	148267121	-	SaurJH9_0685	-	hypothetical protein
675	 30.91	0	753407..754726	-	439	148267122	-	SaurJH9_0686	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
676	 28.16	-1	755506..756123	+	205	148267123	-	SaurJH9_0687	-	hypothetical protein
677	 37.10	+1	756139..757146	+	335	148267124	-	SaurJH9_0688	-	phosphate transporter
678	 37.97	+1	757734..758531	-	265	148267125	-	SaurJH9_0689	-	CHAP domain-containing protein
679	 29.15	-1	758892..759536	+	214	148267126	-	SaurJH9_0690	-	hypothetical protein
680	 26.92	-1	760233..762383	+	716	148267127	-	SaurJH9_0691	-	helix-turn-helix domain-containing protein
681	 23.61	-2	762529..762888	+	119	148267128	-	SaurJH9_0692	-	accessory regulator A-like protein
682	 36.12	0	763078..763794	+	238	148267129	-	SaurJH9_0693	-	hypothetical protein
683	 33.54	0	763794..764267	+	157	148267130	-	SaurJH9_0694	-	hypothetical protein
684	 29.30	-1	764620..765264	+	214	148267131	-	SaurJH9_0695	-	hypothetical protein
685	 32.18	0	765380..766246	+	288	148267132	-	SaurJH9_0696	-	LysR family transcriptional regulator
686	 32.26	0	766384..767598	+	404	148267133	-	SaurJH9_0697	-	major facilitator transporter
687	 30.67	0	767595..768083	+	162	148267134	-	SaurJH9_0698	-	hypothetical protein
688	 27.97	-1	768182..768871	-	229	148267135	-	SaurJH9_0699	-	hypothetical protein
689	 29.95	0	768998..769441	+	147	148267136	-	SaurJH9_0700	-	GCN5-related N-acetyltransferase
690	 29.04	-1	769508..769903	+	131	148267137	-	SaurJH9_0701	-	hypothetical protein
691	 32.00	0	770041..770340	+	99	148267138	-	SaurJH9_0702	-	hypothetical protein
692	 34.07	0	770420..770962	+	180	148267139	-	SaurJH9_0703	-	GCN5-related N-acetyltransferase
693	 36.16	0	771058..771624	-	188	148267140	-	SaurJH9_0704	-	hypothetical protein
694	 33.55	0	771626..772084	-	152	148267141	-	SaurJH9_0705	-	hypothetical protein
695	 30.70	0	772087..772770	-	227	148267142	-	SaurJH9_0706	-	hypothetical protein
696	 33.22	0	772942..773817	-	291	148267143	-	SaurJH9_0707	-	undecaprenyl pyrophosphate phosphatase
697	 32.35	0	774036..775667	+	543	148267144	-	SaurJH9_0708	-	ABC transporter related
698	 32.32	0	775664..777337	+	557	148267145	-	SaurJH9_0709	-	ABC transporter related
699	 32.88	0	777464..777907	-	147	148267146	-	SaurJH9_0710	-	MarR family transcriptional regulator
700	 30.96	0	778134..779060	+	308	148267147	-	SaurJH9_0711	-	cobalamin synthesis protein, P47K
701	 33.55	0	779163..780071	+	302	148267148	-	SaurJH9_0712	-	aldo/keto reductase
702	 26.74	-1	780106..780393	+	95	148267149	-	SaurJH9_0713	-	hypothetical protein
703	 35.59	0	780676..782229	+	517	148267150	-	SaurJH9_0714	-	anion transporter
704	 34.06	0	782315..783688	+	457	148267151	-	SaurJH9_0715	-	deoxyribodipyrimidine photo-lyase
705	 30.53	0	783843..784127	-	94	148267152	-	SaurJH9_0716	-	hypothetical protein
706	 29.45	-1	784124..784741	-	205	148267153	-	SaurJH9_0717	-	hypothetical protein
707	 34.52	0	784927..785349	-	140	148267154	-	SaurJH9_0718	-	hypothetical protein
708	 33.42	0	785562..786728	+	388	148267155	-	SaurJH9_0719	-	major facilitator superfamily multidrug/H(+) antiporter
709	 27.59	-1	787021..787473	+	150	148267156	-	SaurJH9_0720	-	hypothetical protein
710	 36.02	0	787647..788129	+	160	148267157	-	SaurJH9_0721	-	ybaK/ebsC protein
711	 31.76	0	788382..789143	+	253	148267158	-	SaurJH9_0722	-	DeoR family transcriptional regulator
712	 36.81	+1	789140..790060	+	306	148267159	-	SaurJH9_0723	-	1-phosphofructokinase
713	 37.72	+1	790066..792024	+	652	148267160	-	SaurJH9_0724	-	PTS system, fructose subfamily, IIC subunit
714	 35.96	0	792332..793513	+	393	148267161	-	SaurJH9_0725	-	N-acetylglucosamine-6-phosphate deacetylase
715	 32.44	0	793734..795083	+	449	148267162	-	SaurJH9_0726	-	hypothetical protein
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.