IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
570	 26.85	-1	642551..643213	-	220	148267017	-	SaurJH9_0580	-	deoxynucleoside kinase
571	 36.31	0	643235..643705	+	156	148267018	-	SaurJH9_0581	-	CMP/dCMP deaminase, zinc-binding
572	 33.68	0	643852..644721	+	289	148267019	-	SaurJH9_0582	-	Cof-like hydrolase
573	 30.69	0	644742..645308	+	188	148267020	-	SaurJH9_0583	-	hypothetical protein
574	 35.33	0	645738..648635	+	965	148267021	-	SaurJH9_0584	-	cell wall anchor domain-containing protein
575	 33.61	0	649002..653015	+	1337	148267022	-	SaurJH9_0585	-	cell wall anchor domain-containing protein
576	 34.78	0	653409..656870	+	1153	148267023	-	SaurJH9_0586	-	cell wall anchor domain-containing protein
577	 30.28	0	656991..658463	+	490	148267024	-	SaurJH9_0587	-	Poly(glycerol-phosphate) alpha-glucosyltransferase
578	 30.32	0	658588..660078	-	496	148267025	-	SaurJH9_0588	-	Poly(glycerol-phosphate) alpha-glucosyltransferase
579	 34.81	0	660360..661238	-	292	148267026	-	SaurJH9_0589	-	putative GTP cyclohydrolase
580	 36.04	0	661251..661916	-	221	148267027	-	SaurJH9_0590	-	hypothetical protein
581	 35.26	0	661930..662292	-	120	148267028	-	SaurJH9_0591	-	hypothetical protein
582	 33.73	0	662568..663326	+	252	148267029	-	SaurJH9_0592	-	glucosamine/galactosamine-6-phosphate isomerase
583	 34.76	0	663403..664035	+	210	148267030	-	SaurJH9_0593	-	orotidine 5'-phosphate decarboxylase
584	 36.61	+1	664037..664585	+	182	148267031	-	SaurJH9_0594	-	sugar isomerase (SIS)
585	 34.41	0	664698..665345	+	215	148267032	-	SaurJH9_0595	-	HAD family hydrolase
586	 34.55	0	665847..667247	+	466	148267033	-	SaurJH9_0596	-	major facilitator transporter
587	 27.55	-1	667498..667791	+	97	148267034	-	SaurJH9_0597	-	hypothetical protein
588	 32.46	0	667791..669167	+	458	148267035	-	SaurJH9_0598	-	AMP-dependent synthetase and ligase
589	 38.25	+1	669169..670308	+	379	148267036	-	SaurJH9_0599	-	acetyl-CoA acetyltransferase
590	 31.97	0	670283..670648	+	121	148267037	-	SaurJH9_0600	-	hypothetical protein
591	 29.63	-1	670651..670920	+	89	148267038	-	SaurJH9_0601	-	hypothetical protein
592	 29.76	-1	671121..671288	-	55	148267039	-	SaurJH9_0602	-	hypothetical protein
593	 37.91	+1	671795..672625	-	276	148267040	-	SaurJH9_0603	-	phosphomethylpyrimidine kinase
594	 35.46	0	672809..673465	+	218	148267041	-	SaurJH9_0604	-	uracil-DNA glycosylase
595	 35.70	0	673466..673846	+	126	148267042	-	SaurJH9_0605	-	hypothetical protein
596	 33.88	0	673979..674347	+	122	148267043	-	SaurJH9_0606	-	hypothetical protein
597	 35.62	0	674468..675952	+	494	148267044	-	SaurJH9_0607	-	amino acid permease-associated region
598	 34.22	0	676093..676545	-	150	148267045	-	SaurJH9_0608	-	hypothetical protein
599	 36.60	+1	676558..677322	-	254	148267046	-	SaurJH9_0609	-	hypothetical protein
600	 33.33	0	677871..678623	-	250	148267047	-	SaurJH9_0610	-	putative heme peroxidase
601	 36.47	+1	678791..679777	+	328	148267048	eutD	SaurJH9_0611	-	phosphotransacetylase
602	 34.29	0	679780..680616	+	278	148267049	-	SaurJH9_0612	-	lipoate-protein ligase A-like protein
603	 38.11	+1	681203..682123	+	306	148267050	-	SaurJH9_0613	-	mevalonate kinase
604	 36.89	+1	682128..683111	+	327	148267051	-	SaurJH9_0614	-	mevalonate diphosphate decarboxylase
605	 33.43	0	683124..684200	+	358	148267052	-	SaurJH9_0615	-	phosphomevalonate kinase
606	 35.38	0	684377..684718	+	113	148267053	-	SaurJH9_0616	-	hypothetical protein
607	 34.62	0	684770..686092	-	440	148267054	-	SaurJH9_0617	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
608	 32.65	0	686079..686519	-	146	148267055	-	SaurJH9_0618	-	BadM/Rrf2 family transcriptional regulator
609	 34.12	0	687144..688538	+	464	148267056	-	SaurJH9_0619	-	hypothetical protein
610	 24.64	-2	688542..689174	+	210	148267057	-	SaurJH9_0620	-	hypothetical protein
611	 24.96	-2	689221..689841	+	206	148267058	-	SaurJH9_0621	-	hypothetical protein
612	 25.28	-2	689981..690613	+	210	148267059	-	SaurJH9_0622	-	hypothetical protein
613	 34.93	0	691061..691999	+	312	148267060	-	SaurJH9_0623	-	aldo/keto reductase
614	 35.38	0	692445..692981	+	178	148267061	-	SaurJH9_0624	-	hypothetical protein
615	 31.66	0	693149..693625	+	158	148267062	-	SaurJH9_0625	-	GCN5-related N-acetyltransferase
616	 33.10	0	693665..694960	+	431	148267063	-	SaurJH9_0626	-	metal dependent phosphohydrolase
617	 32.94	0	695003..695509	+	168	148267064	-	SaurJH9_0627	-	hypothetical protein
618	 36.20	0	696008..697018	+	336	148267065	-	SaurJH9_0628	-	alcohol dehydrogenase
619	 32.13	0	697294..697710	+	138	148267066	-	SaurJH9_0629	-	hypothetical protein
620	 33.15	0	697707..699368	+	553	148267067	argS	SaurJH9_0630	-	arginyl-tRNA synthetase
621	 28.30	-1	699638..700273	+	211	148267068	-	SaurJH9_0631	-	HhH-GPD family protein
622	 32.09	0	700525..701412	+	295	148267069	-	SaurJH9_0632	-	periplasmic binding protein
623	 31.51	0	701525..702511	+	328	148267070	-	SaurJH9_0633	-	transport system permease protein
624	 30.56	0	702566..703285	+	239	148267071	-	SaurJH9_0634	-	HAD family hydrolase
625	 31.96	0	703269..704069	+	266	148267072	-	SaurJH9_0635	-	alpha/beta hydrolase fold
626	 30.97	0	704205..704711	+	168	148267073	-	SaurJH9_0636	-	hypothetical protein
627	 26.22	-2	704873..705589	+	238	148267074	-	SaurJH9_0637	-	hypothetical protein
628	 29.91	0	705758..706546	+	262	148267075	-	SaurJH9_0638	-	alpha/beta hydrolase fold
629	 27.47	-1	706799..707173	-	124	148267076	-	SaurJH9_0640	-	accessory regulator A-like protein
630	 30.86	0	708121..709050	-	309	148267077	-	SaurJH9_0641	-	hypothetical protein
631	 29.78	-1	709245..709469	-	74	148267078	-	SaurJH9_0642	-	hypothetical protein
632	 31.86	0	709486..709689	-	67	148267079	-	SaurJH9_0643	-	hypothetical protein
633	 30.12	0	709848..710408	+	186	148267080	-	SaurJH9_0644	-	phage integrase family protein
634	 31.96	0	710427..712829	+	800	148267081	-	SaurJH9_0645	-	putative monovalent cation/H+ antiporter subunit A
635	 32.63	0	712816..713241	+	141	148267082	-	SaurJH9_0646	-	putative monovalent cation/H+ antiporter subunit B
636	 30.43	0	713238..713582	+	114	148267083	-	SaurJH9_0647	-	putative monovalent cation/H+ antiporter subunit C
637	 33.47	0	713572..715068	+	498	148267084	-	SaurJH9_0648	-	putative monovalent cation/H+ antiporter subunit D
638	 26.50	-2	715069..715551	+	160	148267085	-	SaurJH9_0649	-	putative monovalent cation/H+ antiporter subunit E
639	 33.00	0	715548..715850	+	100	148267086	-	SaurJH9_0650	-	putative monovalent cation/H+ antiporter subunit F
640	 33.79	0	715825..716262	+	145	148267087	-	SaurJH9_0651	-	putative monovalent cation/H+ antiporter subunit G
641	 31.86	0	716602..718644	+	680	148267088	-	SaurJH9_0652	-	sodium/hydrogen exchanger
642	 30.91	0	718825..720144	-	439	148267089	-	SaurJH9_0653	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
643	 31.61	0	721264..722193	-	309	148267090	-	SaurJH9_0654	-	periplasmic solute binding protein
644	 32.14	0	722190..723026	-	278	148267091	-	SaurJH9_0655	-	ABC-3 protein
645	 33.47	0	723020..723763	-	247	148267092	-	SaurJH9_0656	-	ABC transporter related
646	 30.39	0	723885..724529	+	214	148267093	-	SaurJH9_0657	-	iron dependent repressor
647	 30.81	0	724609..725361	-	250	148267094	-	SaurJH9_0658	-	hypothetical protein
648	 33.73	0	725597..726361	+	254	148267095	-	SaurJH9_0659	-	WecB/TagA/CpsF family glycosyl transferase
649	 34.09	0	726422..727216	-	264	148267096	-	SaurJH9_0660	-	teichoic acids export protein ATP-binding subunit
650	 31.12	0	727563..728375	+	270	148267097	-	SaurJH9_0661	-	ABC-2 type transporter
651	 32.25	0	728474..729577	+	367	148267098	-	SaurJH9_0662	-	CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
652	 32.02	0	729574..730635	+	353	148267099	-	SaurJH9_0663	-	glycosyl transferase family protein
653	 32.33	0	730698..731096	+	132	148267100	-	SaurJH9_0664	-	glycerol-3-phosphate cytidylyltransferase
654	 34.41	0	731213..732508	-	431	148267101	-	SaurJH9_0665	-	Serine-type D-Ala-D-Ala carboxypeptidase
655	 33.10	0	732929..734656	+	575	148267102	-	SaurJH9_0666	-	ABC transporter related
656	 34.23	0	735013..736242	+	409	148267103	-	SaurJH9_0667	-	Na+ dependent nucleoside transporter
657	 23.66	-2	736497..736589	+	30	148267104	-	SaurJH9_0668	-	hypothetical protein
658	 34.05	0	736767..737600	+	277	148267105	-	SaurJH9_0669	-	hypothetical protein
659	 35.09	0	737882..738679	+	265	148267106	-	SaurJH9_0670	-	ABC transporter related
660	 35.92	0	738715..739719	+	334	148267107	-	SaurJH9_0671	-	cell wall anchor domain-containing protein
661	 35.59	0	739716..740732	+	338	148267108	-	SaurJH9_0672	-	transport system permease protein
662	 35.71	0	740966..741934	+	322	148267109	-	SaurJH9_0673	-	dihydroxyacetone kinase, DhaK subunit
663	 35.73	0	741976..742560	+	194	148267110	-	SaurJH9_0674	-	dihydroxyacetone kinase, L subunit
664	 34.71	0	742553..742915	+	120	148267111	-	SaurJH9_0675	-	hypothetical protein
665	 32.53	0	743031..743528	+	165	148267112	-	SaurJH9_0676	-	hypothetical protein
666	 32.96	0	743985..745052	+	355	148267113	-	SaurJH9_0677	-	hypothetical protein
667	 31.13	0	745203..746246	+	347	148267114	-	SaurJH9_0678	-	alpha/beta hydrolase domain-containing protein
668	 27.74	-1	746575..747003	+	142	148267115	-	SaurJH9_0679	-	hypothetical protein
669	 34.71	0	747212..747718	-	168	148267116	-	SaurJH9_0680	-	hypothetical protein
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.