IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
529	 34.88	0	582662..584209	+	515	148266976	lysS	SaurJH9_0539	-	lysyl-tRNA synthetase
530	 29.28	-1	596636..598018	-	460	148266977	-	SaurJH9_0540	-	GntR family transcriptional regulator
531	 38.85	+1	598122..599009	+	295	148266978	-	SaurJH9_0541	-	pyridoxine biosynthesis protein
532	 33.69	0	599013..599573	+	186	148266979	-	SaurJH9_0542	-	glutamine amidotransferase subunit PdxT
533	 33.09	0	599781..600995	-	404	148266980	-	SaurJH9_0543	-	Na+ dependent nucleoside transporter
534	 30.95	0	601153..601614	+	153	148266981	-	SaurJH9_0544	-	transcriptional repressor, CtsR
535	 34.22	0	601633..602199	+	188	148266982	-	SaurJH9_0545	-	hypothetical protein
536	 32.34	0	602186..603196	+	336	148266983	-	SaurJH9_0546	-	ATP:guanido phosphotransferase
537	 34.11	0	603210..605666	+	818	148266984	-	SaurJH9_0547	-	ATPase
538	 36.85	+1	606151..607515	+	454	148266985	-	SaurJH9_0548	-	DNA repair protein RadA
539	 30.45	0	607540..608613	+	357	148266986	-	SaurJH9_0549	-	PilT domain-containing protein
540	 34.23	0	609170..610624	+	484	148266987	-	SaurJH9_0550	-	glutamyl-tRNA synthetase
541	 35.49	0	611047..611694	+	215	148266988	-	SaurJH9_0551	-	serine O-acetyltransferase
542	 33.05	0	611678..613078	+	466	148266989	cysS	SaurJH9_0552	-	cysteinyl-tRNA synthetase
543	 32.10	0	613071..613475	+	134	148266990	-	SaurJH9_0553	-	hypothetical protein
544	 35.34	0	613483..614229	+	248	148266991	-	SaurJH9_0554	-	RNA methyltransferase
545	 32.76	0	614229..614753	+	174	148266992	-	SaurJH9_0555	-	hypothetical protein
546	 27.37	-1	614834..615403	+	189	148266993	-	SaurJH9_0556	-	ECF subfamily RNA polymerase sigma-24 factor
547	 32.64	0	615518..615661	+	47	148266994	rpmG	SaurJH9_0557	-	50S ribosomal protein L33
548	 28.96	-1	615717..615899	+	60	148266995	secE	SaurJH9_0558	-	preprotein translocase subunit SecE
549	 35.52	0	615912..616460	+	182	148266996	-	SaurJH9_0559	-	transcription antitermination protein
550	 38.77	+1	616641..617063	+	140	148266997	rplK	SaurJH9_0560	-	50S ribosomal protein L11
551	 36.36	+1	617271..617963	+	230	148266998	rplA	SaurJH9_0561	-	50S ribosomal protein L1
552	 37.13	+1	618234..618734	+	166	148266999	rplJ	SaurJH9_0562	-	50S ribosomal protein L10
553	 35.77	0	618777..619145	+	122	148267000	rplL	SaurJH9_0563	-	50S ribosomal protein L7/L12
554	 33.83	0	619320..619928	+	202	148267001	-	SaurJH9_0564	-	hypothetical protein
555	 37.44	+1	620143..623694	+	1183	148267002	rpoB	SaurJH9_0565	-	DNA-directed RNA polymerase subunit beta
556	 36.15	0	623831..627454	+	1207	148267003	-	SaurJH9_0566	-	DNA-directed RNA polymerase subunit beta'
557	 32.16	0	627591..627845	+	84	148267004	-	SaurJH9_0567	-	putative ribosomal protein L7Ae-like
558	 37.44	+1	627943..628356	+	137	148267005	rpsL	SaurJH9_0568	-	30S ribosomal protein S12
559	 38.43	+1	628422..628892	+	156	148267006	-	SaurJH9_0569	-	30S ribosomal protein S7
560	 39.15	+1	629015..631096	+	693	148267007	-	SaurJH9_0570	-	elongation factor G
561	 40.68	+2	631313..632497	+	394	148267008	-	SaurJH9_0571	-	elongation factor Tu
562	 34.95	0	632779..633954	-	391	148267009	-	SaurJH9_0572	-	amidohydrolase
563	 34.09	0	634125..635312	+	395	148267010	-	SaurJH9_0573	-	2-amino-3-ketobutyrate coenzyme A ligase
564	 34.36	0	635582..636460	+	292	148267011	-	SaurJH9_0574	-	chaperone protein HchA
565	 32.91	0	636616..638256	+	546	148267012	-	SaurJH9_0575	-	ribulokinase
566	 35.30	0	638470..639435	+	321	148267013	-	SaurJH9_0576	-	NAD-dependent epimerase/dehydratase
567	 34.91	0	639771..640847	+	358	148267014	-	SaurJH9_0577	-	branched-chain amino acid aminotransferase
568	 34.65	0	641097..641780	+	227	148267015	-	SaurJH9_0578	-	HAD family hydrolase
569	 32.13	0	641896..642558	-	220	148267016	-	SaurJH9_0579	-	deoxynucleoside kinase
570	 26.85	-1	642551..643213	-	220	148267017	-	SaurJH9_0580	-	deoxynucleoside kinase
571	 36.31	0	643235..643705	+	156	148267018	-	SaurJH9_0581	-	CMP/dCMP deaminase, zinc-binding
572	 33.68	0	643852..644721	+	289	148267019	-	SaurJH9_0582	-	Cof-like hydrolase
573	 30.69	0	644742..645308	+	188	148267020	-	SaurJH9_0583	-	hypothetical protein
574	 35.33	0	645738..648635	+	965	148267021	-	SaurJH9_0584	-	cell wall anchor domain-containing protein
575	 33.61	0	649002..653015	+	1337	148267022	-	SaurJH9_0585	-	cell wall anchor domain-containing protein
576	 34.78	0	653409..656870	+	1153	148267023	-	SaurJH9_0586	-	cell wall anchor domain-containing protein
577	 30.28	0	656991..658463	+	490	148267024	-	SaurJH9_0587	-	Poly(glycerol-phosphate) alpha-glucosyltransferase
578	 30.32	0	658588..660078	-	496	148267025	-	SaurJH9_0588	-	Poly(glycerol-phosphate) alpha-glucosyltransferase
579	 34.81	0	660360..661238	-	292	148267026	-	SaurJH9_0589	-	putative GTP cyclohydrolase
580	 36.04	0	661251..661916	-	221	148267027	-	SaurJH9_0590	-	hypothetical protein
581	 35.26	0	661930..662292	-	120	148267028	-	SaurJH9_0591	-	hypothetical protein
582	 33.73	0	662568..663326	+	252	148267029	-	SaurJH9_0592	-	glucosamine/galactosamine-6-phosphate isomerase
583	 34.76	0	663403..664035	+	210	148267030	-	SaurJH9_0593	-	orotidine 5'-phosphate decarboxylase
584	 36.61	+1	664037..664585	+	182	148267031	-	SaurJH9_0594	-	sugar isomerase (SIS)
585	 34.41	0	664698..665345	+	215	148267032	-	SaurJH9_0595	-	HAD family hydrolase
586	 34.55	0	665847..667247	+	466	148267033	-	SaurJH9_0596	-	major facilitator transporter
587	 27.55	-1	667498..667791	+	97	148267034	-	SaurJH9_0597	-	hypothetical protein
588	 32.46	0	667791..669167	+	458	148267035	-	SaurJH9_0598	-	AMP-dependent synthetase and ligase
589	 38.25	+1	669169..670308	+	379	148267036	-	SaurJH9_0599	-	acetyl-CoA acetyltransferase
590	 31.97	0	670283..670648	+	121	148267037	-	SaurJH9_0600	-	hypothetical protein
591	 29.63	-1	670651..670920	+	89	148267038	-	SaurJH9_0601	-	hypothetical protein
592	 29.76	-1	671121..671288	-	55	148267039	-	SaurJH9_0602	-	hypothetical protein
593	 37.91	+1	671795..672625	-	276	148267040	-	SaurJH9_0603	-	phosphomethylpyrimidine kinase
594	 35.46	0	672809..673465	+	218	148267041	-	SaurJH9_0604	-	uracil-DNA glycosylase
595	 35.70	0	673466..673846	+	126	148267042	-	SaurJH9_0605	-	hypothetical protein
596	 33.88	0	673979..674347	+	122	148267043	-	SaurJH9_0606	-	hypothetical protein
597	 35.62	0	674468..675952	+	494	148267044	-	SaurJH9_0607	-	amino acid permease-associated region
598	 34.22	0	676093..676545	-	150	148267045	-	SaurJH9_0608	-	hypothetical protein
599	 36.60	+1	676558..677322	-	254	148267046	-	SaurJH9_0609	-	hypothetical protein
600	 33.33	0	677871..678623	-	250	148267047	-	SaurJH9_0610	-	putative heme peroxidase
601	 36.47	+1	678791..679777	+	328	148267048	eutD	SaurJH9_0611	-	phosphotransacetylase
602	 34.29	0	679780..680616	+	278	148267049	-	SaurJH9_0612	-	lipoate-protein ligase A-like protein
603	 38.11	+1	681203..682123	+	306	148267050	-	SaurJH9_0613	-	mevalonate kinase
604	 36.89	+1	682128..683111	+	327	148267051	-	SaurJH9_0614	-	mevalonate diphosphate decarboxylase
605	 33.43	0	683124..684200	+	358	148267052	-	SaurJH9_0615	-	phosphomevalonate kinase
606	 35.38	0	684377..684718	+	113	148267053	-	SaurJH9_0616	-	hypothetical protein
607	 34.62	0	684770..686092	-	440	148267054	-	SaurJH9_0617	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
608	 32.65	0	686079..686519	-	146	148267055	-	SaurJH9_0618	-	BadM/Rrf2 family transcriptional regulator
609	 34.12	0	687144..688538	+	464	148267056	-	SaurJH9_0619	-	hypothetical protein
610	 24.64	-2	688542..689174	+	210	148267057	-	SaurJH9_0620	-	hypothetical protein
611	 24.96	-2	689221..689841	+	206	148267058	-	SaurJH9_0621	-	hypothetical protein
612	 25.28	-2	689981..690613	+	210	148267059	-	SaurJH9_0622	-	hypothetical protein
613	 34.93	0	691061..691999	+	312	148267060	-	SaurJH9_0623	-	aldo/keto reductase
614	 35.38	0	692445..692981	+	178	148267061	-	SaurJH9_0624	-	hypothetical protein
615	 31.66	0	693149..693625	+	158	148267062	-	SaurJH9_0625	-	GCN5-related N-acetyltransferase
616	 33.10	0	693665..694960	+	431	148267063	-	SaurJH9_0626	-	metal dependent phosphohydrolase
617	 32.94	0	695003..695509	+	168	148267064	-	SaurJH9_0627	-	hypothetical protein
618	 36.20	0	696008..697018	+	336	148267065	-	SaurJH9_0628	-	alcohol dehydrogenase
619	 32.13	0	697294..697710	+	138	148267066	-	SaurJH9_0629	-	hypothetical protein
620	 33.15	0	697707..699368	+	553	148267067	argS	SaurJH9_0630	-	arginyl-tRNA synthetase
621	 28.30	-1	699638..700273	+	211	148267068	-	SaurJH9_0631	-	HhH-GPD family protein
622	 32.09	0	700525..701412	+	295	148267069	-	SaurJH9_0632	-	periplasmic binding protein
623	 31.51	0	701525..702511	+	328	148267070	-	SaurJH9_0633	-	transport system permease protein
624	 30.56	0	702566..703285	+	239	148267071	-	SaurJH9_0634	-	HAD family hydrolase
625	 31.96	0	703269..704069	+	266	148267072	-	SaurJH9_0635	-	alpha/beta hydrolase fold
626	 30.97	0	704205..704711	+	168	148267073	-	SaurJH9_0636	-	hypothetical protein
627	 26.22	-2	704873..705589	+	238	148267074	-	SaurJH9_0637	-	hypothetical protein
628	 29.91	0	705758..706546	+	262	148267075	-	SaurJH9_0638	-	alpha/beta hydrolase fold
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.