IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
469	 33.74	0	512307..513041	+	244	148266916	-	SaurJH9_0479	-	hypothetical protein
470	 34.53	0	513410..514750	+	446	148266917	-	SaurJH9_0480	-	sodium:neurotransmitter symporter
471	 39.08	+1	514916..515872	+	318	148266918	-	SaurJH9_0481	-	pyridoxal-5'-phosphate-dependent enzyme, beta subunit
472	 36.13	0	515865..517007	+	380	148266919	-	SaurJH9_0482	-	cystathionine gamma-synthase
473	 35.18	0	517299..518327	+	342	148266920	-	SaurJH9_0483	-	ABC transporter related
474	 36.67	+1	518331..518990	+	219	148266921	-	SaurJH9_0484	-	binding-protein-dependent transport systems inner membrane component
475	 32.86	0	519027..519869	+	280	148266922	-	SaurJH9_0485	-	NLPA lipoprotein
476	 36.62	+1	520201..521205	+	334	148266923	-	SaurJH9_0486	-	CHAP domain-containing protein
477	 32.96	0	521390..521659	-	89	148266924	-	SaurJH9_0487	-	hypothetical protein
478	 34.09	0	521808..522203	+	131	148266925	-	SaurJH9_0488	-	NUDIX hydrolase
479	 36.01	0	522193..522678	+	161	148266926	-	SaurJH9_0489	-	GCN5-related N-acetyltransferase
480	 32.44	0	522847..523629	-	260	148266927	-	SaurJH9_0490	-	hypothetical protein
481	 33.42	0	523626..524738	-	370	148266928	-	SaurJH9_0491	-	hypothetical protein
482	 33.11	0	524859..525743	-	294	148266929	-	SaurJH9_0492	-	LysR family transcriptional regulator
483	 37.67	+1	525924..530423	+	1499	148266930	-	SaurJH9_0493	-	glutamate synthase (ferredoxin)
484	 38.39	+1	530441..531904	+	487	148266931	gltD	SaurJH9_0494	-	glutamate synthase subunit beta
485	 37.18	+1	532734..534161	+	475	148266932	-	SaurJH9_0495	-	PTS system, trehalose-specific IIBC subunit
486	 36.26	0	534225..535865	+	546	148266933	-	SaurJH9_0496	-	alpha,alpha-phosphotrehalase
487	 33.74	0	535890..536618	+	242	148266934	-	SaurJH9_0497	-	GntR family transcriptional regulator
488	 33.14	0	537261..537785	+	174	148266935	-	SaurJH9_0498	-	GCN5-related N-acetyltransferase
489	 36.28	0	537854..539551	+	565	148266936	-	SaurJH9_0499	-	DNA polymerase III, subunits gamma and tau
490	 39.62	+1	539641..539958	+	105	148266937	-	SaurJH9_0500	-	hypothetical protein
491	 36.35	0	539965..540561	+	198	148266938	recR	SaurJH9_0501	-	recombination protein RecR
492	 33.03	0	547352..548689	+	445	148266939	-	SaurJH9_0502	-	Orn/Lys/Arg decarboxylase, major region
493	 33.01	0	548691..549308	+	205	148266940	-	SaurJH9_0503	-	dTMP kinase
494	 37.58	+1	549336..549665	+	109	148266941	-	SaurJH9_0504	-	hypothetical protein
495	 30.74	0	549879..550805	+	308	148266942	-	SaurJH9_0505	-	DNA-directed DNA polymerase
496	 32.71	0	550806..551609	+	267	148266943	-	SaurJH9_0506	-	PSP1 domain-containing protein
497	 31.90	0	551626..551973	+	115	148266944	-	SaurJH9_0507	-	DNA replication intiation control protein YabA
498	 33.75	0	552247..552972	+	241	148266945	-	SaurJH9_0508	-	hypothetical protein
499	 33.73	0	552965..553213	+	82	148266946	-	SaurJH9_0509	-	excinuclease ABC subunit C
500	 35.12	0	553215..554054	+	279	148266947	-	SaurJH9_0510	-	uroporphyrin-III C/tetrapyrrole methyltransferase
501	 34.09	0	554339..556312	+	657	148266948	-	SaurJH9_0511	-	methionyl-tRNA synthetase
502	 36.82	+1	556343..557116	+	257	148266949	-	SaurJH9_0512	-	TatD family hydrolase
503	 35.20	0	557283..557819	+	178	148266950	-	SaurJH9_0513	-	hypothetical protein
504	 32.77	0	557830..558723	+	297	148266951	ksgA	SaurJH9_0514	-	dimethyladenosine transferase
505	 32.20	0	558823..559086	+	87	148266952	-	SaurJH9_0515	-	hypothetical protein
506	 34.75	0	559396..560244	+	282	148266953	-	SaurJH9_0516	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
507	 32.24	0	560258..561082	+	274	148266954	-	SaurJH9_0517	-	purine operon repressor
508	 34.38	0	561099..561479	+	126	148266955	-	SaurJH9_0518	-	putative endoribonuclease L-PSP
509	 36.63	+1	561551..561853	+	100	148266956	-	SaurJH9_0519	-	regulatory protein SpoVG
510	 25.00	-2	562064..562195	+	43	148266957	-	SaurJH9_0520	-	hypothetical protein
511	 39.25	+1	562218..563570	+	450	148266958	-	SaurJH9_0521	-	UDP-N-acetylglucosamine pyrophosphorylase
512	 35.30	0	563717..564682	+	321	148266959	-	SaurJH9_0522	-	ribose-phosphate pyrophosphokinase
513	 37.46	+1	564832..565485	+	217	148266960	-	SaurJH9_0523	-	50S ribosomal protein L25/general stress protein Ctc
514	 32.81	0	565796..566368	+	190	148266961	-	SaurJH9_0524	-	peptidyl-tRNA hydrolase
515	 34.16	0	566368..569874	+	1168	148266962	-	SaurJH9_0525	-	transcription-repair coupling factor
516	 32.94	0	569864..571390	+	508	148266963	-	SaurJH9_0526	-	polysaccharide biosynthesis protein
517	 35.01	0	571390..572583	+	397	148266964	-	SaurJH9_0527	-	MazG nucleotide pyrophosphohydrolase
518	 34.85	0	572580..572843	+	87	148266965	-	SaurJH9_0528	-	RNA-binding S4 domain-containing protein
519	 33.33	0	572861..573253	+	130	148266966	-	SaurJH9_0529	-	septum formation initiator
520	 34.58	0	573358..573759	+	133	148266967	-	SaurJH9_0530	-	hypothetical protein
521	 30.71	0	573939..575234	+	431	148266968	-	SaurJH9_0531	-	hypothetical protein
522	 30.37	0	575239..575778	+	179	148266969	-	SaurJH9_0532	-	hypoxanthine phosphoribosyltransferase
523	 35.63	0	576035..578128	+	697	148266970	-	SaurJH9_0533	-	ATP-dependent metalloprotease FtsH
524	 36.51	+1	578356..579237	+	293	148266971	-	SaurJH9_0534	-	Hsp33 protein
525	 38.16	+1	579416..580348	+	310	148266972	-	SaurJH9_0535	-	cysteine synthase A
526	 36.32	0	580564..581367	+	267	148266973	-	SaurJH9_0536	-	dihydropteroate synthase
527	 35.79	0	581345..581710	+	121	148266974	-	SaurJH9_0537	-	dihydroneopterin aldolase
528	 33.75	0	581707..582183	+	158	148266975	-	SaurJH9_0538	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
529	 34.88	0	582662..584209	+	515	148266976	lysS	SaurJH9_0539	-	lysyl-tRNA synthetase
530	 29.28	-1	596636..598018	-	460	148266977	-	SaurJH9_0540	-	GntR family transcriptional regulator
531	 38.85	+1	598122..599009	+	295	148266978	-	SaurJH9_0541	-	pyridoxine biosynthesis protein
532	 33.69	0	599013..599573	+	186	148266979	-	SaurJH9_0542	-	glutamine amidotransferase subunit PdxT
533	 33.09	0	599781..600995	-	404	148266980	-	SaurJH9_0543	-	Na+ dependent nucleoside transporter
534	 30.95	0	601153..601614	+	153	148266981	-	SaurJH9_0544	-	transcriptional repressor, CtsR
535	 34.22	0	601633..602199	+	188	148266982	-	SaurJH9_0545	-	hypothetical protein
536	 32.34	0	602186..603196	+	336	148266983	-	SaurJH9_0546	-	ATP:guanido phosphotransferase
537	 34.11	0	603210..605666	+	818	148266984	-	SaurJH9_0547	-	ATPase
538	 36.85	+1	606151..607515	+	454	148266985	-	SaurJH9_0548	-	DNA repair protein RadA
539	 30.45	0	607540..608613	+	357	148266986	-	SaurJH9_0549	-	PilT domain-containing protein
540	 34.23	0	609170..610624	+	484	148266987	-	SaurJH9_0550	-	glutamyl-tRNA synthetase
541	 35.49	0	611047..611694	+	215	148266988	-	SaurJH9_0551	-	serine O-acetyltransferase
542	 33.05	0	611678..613078	+	466	148266989	cysS	SaurJH9_0552	-	cysteinyl-tRNA synthetase
543	 32.10	0	613071..613475	+	134	148266990	-	SaurJH9_0553	-	hypothetical protein
544	 35.34	0	613483..614229	+	248	148266991	-	SaurJH9_0554	-	RNA methyltransferase
545	 32.76	0	614229..614753	+	174	148266992	-	SaurJH9_0555	-	hypothetical protein
546	 27.37	-1	614834..615403	+	189	148266993	-	SaurJH9_0556	-	ECF subfamily RNA polymerase sigma-24 factor
547	 32.64	0	615518..615661	+	47	148266994	rpmG	SaurJH9_0557	-	50S ribosomal protein L33
548	 28.96	-1	615717..615899	+	60	148266995	secE	SaurJH9_0558	-	preprotein translocase subunit SecE
549	 35.52	0	615912..616460	+	182	148266996	-	SaurJH9_0559	-	transcription antitermination protein
550	 38.77	+1	616641..617063	+	140	148266997	rplK	SaurJH9_0560	-	50S ribosomal protein L11
551	 36.36	+1	617271..617963	+	230	148266998	rplA	SaurJH9_0561	-	50S ribosomal protein L1
552	 37.13	+1	618234..618734	+	166	148266999	rplJ	SaurJH9_0562	-	50S ribosomal protein L10
553	 35.77	0	618777..619145	+	122	148267000	rplL	SaurJH9_0563	-	50S ribosomal protein L7/L12
554	 33.83	0	619320..619928	+	202	148267001	-	SaurJH9_0564	-	hypothetical protein
555	 37.44	+1	620143..623694	+	1183	148267002	rpoB	SaurJH9_0565	-	DNA-directed RNA polymerase subunit beta
556	 36.15	0	623831..627454	+	1207	148267003	-	SaurJH9_0566	-	DNA-directed RNA polymerase subunit beta'
557	 32.16	0	627591..627845	+	84	148267004	-	SaurJH9_0567	-	putative ribosomal protein L7Ae-like
558	 37.44	+1	627943..628356	+	137	148267005	rpsL	SaurJH9_0568	-	30S ribosomal protein S12
559	 38.43	+1	628422..628892	+	156	148267006	-	SaurJH9_0569	-	30S ribosomal protein S7
560	 39.15	+1	629015..631096	+	693	148267007	-	SaurJH9_0570	-	elongation factor G
561	 40.68	+2	631313..632497	+	394	148267008	-	SaurJH9_0571	-	elongation factor Tu
562	 34.95	0	632779..633954	-	391	148267009	-	SaurJH9_0572	-	amidohydrolase
563	 34.09	0	634125..635312	+	395	148267010	-	SaurJH9_0573	-	2-amino-3-ketobutyrate coenzyme A ligase
564	 34.36	0	635582..636460	+	292	148267011	-	SaurJH9_0574	-	chaperone protein HchA
565	 32.91	0	636616..638256	+	546	148267012	-	SaurJH9_0575	-	ribulokinase
566	 35.30	0	638470..639435	+	321	148267013	-	SaurJH9_0576	-	NAD-dependent epimerase/dehydratase
567	 34.91	0	639771..640847	+	358	148267014	-	SaurJH9_0577	-	branched-chain amino acid aminotransferase
568	 34.65	0	641097..641780	+	227	148267015	-	SaurJH9_0578	-	HAD family hydrolase
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.