IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.08   STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
438	 34.55	0	478315..479385	+	356	148266885	-	SaurJH9_0447	-	superantigen-like protein
439	 33.45	0	479749..480627	+	292	148266886	-	SaurJH9_0448	-	superantigen-like protein
440	 31.77	0	480991..481695	+	234	148266887	-	SaurJH9_0449	-	superantigen-like protein 5
441	 30.32	0	482141..482836	+	231	148266888	-	SaurJH9_0450	-	superantigen-like protein 7
442	 28.61	-1	483175..483873	+	232	148266889	-	SaurJH9_0451	-	superantigen-like protein
443	 29.76	-1	484250..484948	+	232	148266890	-	SaurJH9_0452	-	superantigen-like protein
444	 29.39	-1	485314..485997	+	227	148266891	-	SaurJH9_0453	-	superantigen-like protein
445	 38.21	+1	486261..487817	+	518	148266892	-	SaurJH9_0454	-	type I restriction-modification system, M subunit
446	 29.21	-1	487810..489021	+	403	148266893	-	SaurJH9_0455	-	restriction modification system DNA specificity subunit
447	 29.82	0	489404..490087	+	227	148266894	-	SaurJH9_0456	-	superantigen-like protein
448	 31.79	0	490109..491596	+	495	148266895	-	SaurJH9_0457	-	hypothetical protein
449	 34.63	0	491705..492013	-	102	148266896	-	SaurJH9_0458	-	hypothetical protein
450	 29.07	-1	492380..493153	+	257	148266897	-	SaurJH9_0459	-	putative lipoprotein
451	 27.92	-1	493184..493978	+	264	148266898	-	SaurJH9_0460	-	putative lipoprotein
452	 30.15	0	494026..494811	+	261	148266899	-	SaurJH9_0461	-	putative lipoprotein
453	 30.28	0	495678..496463	+	261	148266900	-	SaurJH9_0463	-	putative lipoprotein
454	 30.01	0	496482..497264	+	260	148266901	-	SaurJH9_0464	-	putative lipoprotein
455	 30.43	0	497324..498115	+	263	148266902	-	SaurJH9_0465	-	putative lipoprotein
456	 29.34	-1	498167..498967	+	266	148266903	-	SaurJH9_0466	-	putative lipoprotein
457	 30.14	0	498986..499768	+	260	148266904	-	SaurJH9_0467	-	putative lipoprotein
458	 30.75	0	499950..500762	+	270	148266905	-	SaurJH9_0468	-	putative lipoprotein
459	 30.47	0	500752..502077	+	441	148266906	-	SaurJH9_0469	-	hypothetical protein
460	 27.47	-1	502074..502397	+	107	148266907	-	SaurJH9_0470	-	hypothetical protein
461	 31.75	0	502416..502730	+	104	148266908	-	SaurJH9_0471	-	hypothetical protein
462	 30.26	0	503019..503213	-	64	148266909	-	SaurJH9_0472	-	hypothetical protein
463	 36.24	0	503398..504600	+	400	148266910	-	SaurJH9_0473	-	cobalamin synthesis protein, P47K
464	 37.51	+1	506187..507671	+	494	148266911	-	SaurJH9_0474	-	NADH dehydrogenase subunit 5
465	 38.80	+1	507684..510389	+	901	148266912	-	SaurJH9_0475	-	hypothetical protein
466	 34.16	0	510551..510913	+	120	148266913	-	SaurJH9_0476	-	hypothetical protein
467	 26.86	-1	511142..511558	-	138	148266914	-	SaurJH9_0477	-	hypothetical protein
468	 34.22	0	511596..512270	+	224	148266915	-	SaurJH9_0478	-	hypothetical protein
469	 33.74	0	512307..513041	+	244	148266916	-	SaurJH9_0479	-	hypothetical protein
470	 34.53	0	513410..514750	+	446	148266917	-	SaurJH9_0480	-	sodium:neurotransmitter symporter
471	 39.08	+1	514916..515872	+	318	148266918	-	SaurJH9_0481	-	pyridoxal-5'-phosphate-dependent enzyme, beta subunit
472	 36.13	0	515865..517007	+	380	148266919	-	SaurJH9_0482	-	cystathionine gamma-synthase
473	 35.18	0	517299..518327	+	342	148266920	-	SaurJH9_0483	-	ABC transporter related
474	 36.67	+1	518331..518990	+	219	148266921	-	SaurJH9_0484	-	binding-protein-dependent transport systems inner membrane component
475	 32.86	0	519027..519869	+	280	148266922	-	SaurJH9_0485	-	NLPA lipoprotein
476	 36.62	+1	520201..521205	+	334	148266923	-	SaurJH9_0486	-	CHAP domain-containing protein
477	 32.96	0	521390..521659	-	89	148266924	-	SaurJH9_0487	-	hypothetical protein
478	 34.09	0	521808..522203	+	131	148266925	-	SaurJH9_0488	-	NUDIX hydrolase
479	 36.01	0	522193..522678	+	161	148266926	-	SaurJH9_0489	-	GCN5-related N-acetyltransferase
480	 32.44	0	522847..523629	-	260	148266927	-	SaurJH9_0490	-	hypothetical protein
481	 33.42	0	523626..524738	-	370	148266928	-	SaurJH9_0491	-	hypothetical protein
482	 33.11	0	524859..525743	-	294	148266929	-	SaurJH9_0492	-	LysR family transcriptional regulator
483	 37.67	+1	525924..530423	+	1499	148266930	-	SaurJH9_0493	-	glutamate synthase (ferredoxin)
484	 38.39	+1	530441..531904	+	487	148266931	gltD	SaurJH9_0494	-	glutamate synthase subunit beta
485	 37.18	+1	532734..534161	+	475	148266932	-	SaurJH9_0495	-	PTS system, trehalose-specific IIBC subunit
486	 36.26	0	534225..535865	+	546	148266933	-	SaurJH9_0496	-	alpha,alpha-phosphotrehalase
487	 33.74	0	535890..536618	+	242	148266934	-	SaurJH9_0497	-	GntR family transcriptional regulator
488	 33.14	0	537261..537785	+	174	148266935	-	SaurJH9_0498	-	GCN5-related N-acetyltransferase
489	 36.28	0	537854..539551	+	565	148266936	-	SaurJH9_0499	-	DNA polymerase III, subunits gamma and tau
490	 39.62	+1	539641..539958	+	105	148266937	-	SaurJH9_0500	-	hypothetical protein
491	 36.35	0	539965..540561	+	198	148266938	recR	SaurJH9_0501	-	recombination protein RecR
492	 33.03	0	547352..548689	+	445	148266939	-	SaurJH9_0502	-	Orn/Lys/Arg decarboxylase, major region
493	 33.01	0	548691..549308	+	205	148266940	-	SaurJH9_0503	-	dTMP kinase
494	 37.58	+1	549336..549665	+	109	148266941	-	SaurJH9_0504	-	hypothetical protein
495	 30.74	0	549879..550805	+	308	148266942	-	SaurJH9_0505	-	DNA-directed DNA polymerase
496	 32.71	0	550806..551609	+	267	148266943	-	SaurJH9_0506	-	PSP1 domain-containing protein
497	 31.90	0	551626..551973	+	115	148266944	-	SaurJH9_0507	-	DNA replication intiation control protein YabA
498	 33.75	0	552247..552972	+	241	148266945	-	SaurJH9_0508	-	hypothetical protein
499	 33.73	0	552965..553213	+	82	148266946	-	SaurJH9_0509	-	excinuclease ABC subunit C
500	 35.12	0	553215..554054	+	279	148266947	-	SaurJH9_0510	-	uroporphyrin-III C/tetrapyrrole methyltransferase
501	 34.09	0	554339..556312	+	657	148266948	-	SaurJH9_0511	-	methionyl-tRNA synthetase
502	 36.82	+1	556343..557116	+	257	148266949	-	SaurJH9_0512	-	TatD family hydrolase
503	 35.20	0	557283..557819	+	178	148266950	-	SaurJH9_0513	-	hypothetical protein
504	 32.77	0	557830..558723	+	297	148266951	ksgA	SaurJH9_0514	-	dimethyladenosine transferase
505	 32.20	0	558823..559086	+	87	148266952	-	SaurJH9_0515	-	hypothetical protein
506	 34.75	0	559396..560244	+	282	148266953	-	SaurJH9_0516	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
507	 32.24	0	560258..561082	+	274	148266954	-	SaurJH9_0517	-	purine operon repressor
508	 34.38	0	561099..561479	+	126	148266955	-	SaurJH9_0518	-	putative endoribonuclease L-PSP
509	 36.63	+1	561551..561853	+	100	148266956	-	SaurJH9_0519	-	regulatory protein SpoVG
510	 25.00	-2	562064..562195	+	43	148266957	-	SaurJH9_0520	-	hypothetical protein
511	 39.25	+1	562218..563570	+	450	148266958	-	SaurJH9_0521	-	UDP-N-acetylglucosamine pyrophosphorylase
512	 35.30	0	563717..564682	+	321	148266959	-	SaurJH9_0522	-	ribose-phosphate pyrophosphokinase
513	 37.46	+1	564832..565485	+	217	148266960	-	SaurJH9_0523	-	50S ribosomal protein L25/general stress protein Ctc
514	 32.81	0	565796..566368	+	190	148266961	-	SaurJH9_0524	-	peptidyl-tRNA hydrolase
515	 34.16	0	566368..569874	+	1168	148266962	-	SaurJH9_0525	-	transcription-repair coupling factor
516	 32.94	0	569864..571390	+	508	148266963	-	SaurJH9_0526	-	polysaccharide biosynthesis protein
517	 35.01	0	571390..572583	+	397	148266964	-	SaurJH9_0527	-	MazG nucleotide pyrophosphohydrolase
518	 34.85	0	572580..572843	+	87	148266965	-	SaurJH9_0528	-	RNA-binding S4 domain-containing protein
519	 33.33	0	572861..573253	+	130	148266966	-	SaurJH9_0529	-	septum formation initiator
520	 34.58	0	573358..573759	+	133	148266967	-	SaurJH9_0530	-	hypothetical protein
521	 30.71	0	573939..575234	+	431	148266968	-	SaurJH9_0531	-	hypothetical protein
522	 30.37	0	575239..575778	+	179	148266969	-	SaurJH9_0532	-	hypoxanthine phosphoribosyltransferase
523	 35.63	0	576035..578128	+	697	148266970	-	SaurJH9_0533	-	ATP-dependent metalloprotease FtsH
524	 36.51	+1	578356..579237	+	293	148266971	-	SaurJH9_0534	-	Hsp33 protein
525	 38.16	+1	579416..580348	+	310	148266972	-	SaurJH9_0535	-	cysteine synthase A
526	 36.32	0	580564..581367	+	267	148266973	-	SaurJH9_0536	-	dihydropteroate synthase
527	 35.79	0	581345..581710	+	121	148266974	-	SaurJH9_0537	-	dihydroneopterin aldolase
528	 33.75	0	581707..582183	+	158	148266975	-	SaurJH9_0538	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
529	 34.88	0	582662..584209	+	515	148266976	lysS	SaurJH9_0539	-	lysyl-tRNA synthetase
530	 29.28	-1	596636..598018	-	460	148266977	-	SaurJH9_0540	-	GntR family transcriptional regulator
531	 38.85	+1	598122..599009	+	295	148266978	-	SaurJH9_0541	-	pyridoxine biosynthesis protein
532	 33.69	0	599013..599573	+	186	148266979	-	SaurJH9_0542	-	glutamine amidotransferase subunit PdxT
533	 33.09	0	599781..600995	-	404	148266980	-	SaurJH9_0543	-	Na+ dependent nucleoside transporter
534	 30.95	0	601153..601614	+	153	148266981	-	SaurJH9_0544	-	transcriptional repressor, CtsR
535	 34.22	0	601633..602199	+	188	148266982	-	SaurJH9_0545	-	hypothetical protein
536	 32.34	0	602186..603196	+	336	148266983	-	SaurJH9_0546	-	ATP:guanido phosphotransferase
537	 34.11	0	603210..605666	+	818	148266984	-	SaurJH9_0547	-	ATPase
33.08	MEAN

3.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.