IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
393	 31.75	0	434225..435358	-	377	148266840	-	SaurJH9_0401	-	hypothetical protein
394	 38.41	+1	435897..437078	+	393	148266841	-	SaurJH9_0402	-	acetyl-CoA acetyltransferase
395	 37.45	+1	437161..437913	-	250	148266842	-	SaurJH9_0403	-	hypothetical protein
396	 34.41	0	437956..440184	-	742	148266843	-	SaurJH9_0404	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
397	 36.10	0	440181..442022	-	613	148266844	-	SaurJH9_0405	-	bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein
398	 37.90	+1	441991..443151	-	386	148266845	-	SaurJH9_0406	-	cystathionine gamma-synthase
399	 35.42	0	443148..444251	-	367	148266846	-	SaurJH9_0407	-	cystathionine gamma-synthase
400	 33.81	0	444922..445758	+	278	148266847	-	SaurJH9_0408	-	parB-like partition protein
401	 31.41	0	445912..446793	+	293	148266848	-	SaurJH9_0409	-	hypothetical protein
402	 30.88	0	446823..447026	+	67	148266849	-	SaurJH9_0410	-	hypothetical protein
403	 35.34	0	447038..448135	+	365	148266850	-	SaurJH9_0411	-	translation-associated GTPase
404	 32.29	0	448221..448412	-	63	148266851	-	SaurJH9_0412	-	hypothetical protein
405	 38.05	+1	448656..448952	+	98	148266852	rpsF	SaurJH9_0413	-	30S ribosomal protein S6
406	 38.29	+1	448973..449476	+	167	148266853	-	SaurJH9_0414	-	single-strand binding protein
407	 37.04	+1	449528..449770	+	80	148266854	rpsR	SaurJH9_0415	-	30S ribosomal protein S18
408	 28.00	-1	450047..451021	-	324	148266855	-	SaurJH9_0416	-	Abi family protein
409	 32.62	0	451443..451583	-	46	148266856	-	SaurJH9_0418	-	hypothetical protein
410	 29.90	0	451943..452554	+	203	148266857	-	SaurJH9_0419	-	hypothetical protein
411	 31.44	0	452923..453291	+	122	148266858	-	SaurJH9_0420	-	hypothetical protein
412	 30.89	0	453472..454044	+	190	148266859	-	SaurJH9_0421	-	hypothetical protein
413	 29.17	-1	454181..454444	-	87	148266860	-	SaurJH9_0422	-	hypothetical protein
414	 36.90	+1	454744..454995	+	83	148266861	-	SaurJH9_0423	-	hypothetical protein
415	 31.96	0	455421..456002	+	193	148266862	-	SaurJH9_0424	-	phosphoglycerate mutase
416	 31.01	0	456068..456454	-	128	148266863	-	SaurJH9_0425	-	hypothetical protein
417	 30.46	0	456721..457347	-	208	148266864	-	SaurJH9_0426	-	hypothetical protein
418	 32.93	0	457420..457665	-	81	148266865	-	SaurJH9_0427	-	hypothetical protein
419	 37.99	+1	457791..459314	-	507	148266866	-	SaurJH9_0428	-	alkyl hydroperoxide reductase subunit F
420	 37.19	+1	459330..459899	-	189	148266867	-	SaurJH9_0429	-	alkyl hydroperoxide reductase subunit C
421	 37.43	+1	460391..461146	+	251	148266868	-	SaurJH9_0430	-	nitroreductase
422	 39.31	+1	461226..462614	-	462	148266869	-	SaurJH9_0431	-	sodium:dicarboxylate symporter
423	 37.62	+1	463592..464548	-	318	148266870	-	SaurJH9_0432	-	hypothetical protein
424	 30.17	0	464666..465328	-	220	148266871	-	SaurJH9_0433	-	hypothetical protein
425	 32.84	0	465471..465878	-	135	148266872	-	SaurJH9_0434	-	hypothetical protein
426	 35.58	0	466391..466969	+	192	148266873	-	SaurJH9_0435	-	xanthine phosphoribosyltransferase
427	 35.54	0	466969..468237	+	422	148266874	-	SaurJH9_0436	-	uracil-xanthine permease
428	 37.29	+1	468275..469741	+	488	148266875	-	SaurJH9_0437	-	inosine-5'-monophosphate dehydrogenase
429	 37.29	+1	469766..471307	+	513	148266876	guaA	SaurJH9_0438	-	bifunctional GMP synthase/glutamine amidotransferase protein
430	 27.56	-1	471420..471956	-	178	148266877	-	SaurJH9_0439	-	hypothetical protein
431	 27.80	-1	472348..473052	-	234	148266878	-	SaurJH9_0440	-	hypothetical protein
432	 25.27	-2	473451..473723	-	90	148266879	-	SaurJH9_0441	-	transposase IS3/IS911 family protein
433	 27.78	-1	473984..474145	-	53	148266880	-	SaurJH9_0442	-	hypothetical protein
434	 32.50	0	474668..475027	-	119	148266881	-	SaurJH9_0443	-	hypothetical protein
435	 34.87	0	475046..475891	-	281	148266882	-	SaurJH9_0444	-	hypothetical protein
436	 30.84	0	476363..477043	+	226	148266883	-	SaurJH9_0445	-	superantigen-like protein
437	 29.31	-1	477329..478024	+	231	148266884	-	SaurJH9_0446	-	superantigen-like protein
438	 34.55	0	478315..479385	+	356	148266885	-	SaurJH9_0447	-	superantigen-like protein
439	 33.45	0	479749..480627	+	292	148266886	-	SaurJH9_0448	-	superantigen-like protein
440	 31.77	0	480991..481695	+	234	148266887	-	SaurJH9_0449	-	superantigen-like protein 5
441	 30.32	0	482141..482836	+	231	148266888	-	SaurJH9_0450	-	superantigen-like protein 7
442	 28.61	-1	483175..483873	+	232	148266889	-	SaurJH9_0451	-	superantigen-like protein
443	 29.76	-1	484250..484948	+	232	148266890	-	SaurJH9_0452	-	superantigen-like protein
444	 29.39	-1	485314..485997	+	227	148266891	-	SaurJH9_0453	-	superantigen-like protein
445	 38.21	+1	486261..487817	+	518	148266892	-	SaurJH9_0454	-	type I restriction-modification system, M subunit
446	 29.21	-1	487810..489021	+	403	148266893	-	SaurJH9_0455	-	restriction modification system DNA specificity subunit
447	 29.82	0	489404..490087	+	227	148266894	-	SaurJH9_0456	-	superantigen-like protein
448	 31.79	0	490109..491596	+	495	148266895	-	SaurJH9_0457	-	hypothetical protein
449	 34.63	0	491705..492013	-	102	148266896	-	SaurJH9_0458	-	hypothetical protein
450	 29.07	-1	492380..493153	+	257	148266897	-	SaurJH9_0459	-	putative lipoprotein
451	 27.92	-1	493184..493978	+	264	148266898	-	SaurJH9_0460	-	putative lipoprotein
452	 30.15	0	494026..494811	+	261	148266899	-	SaurJH9_0461	-	putative lipoprotein
453	 30.28	0	495678..496463	+	261	148266900	-	SaurJH9_0463	-	putative lipoprotein
454	 30.01	0	496482..497264	+	260	148266901	-	SaurJH9_0464	-	putative lipoprotein
455	 30.43	0	497324..498115	+	263	148266902	-	SaurJH9_0465	-	putative lipoprotein
456	 29.34	-1	498167..498967	+	266	148266903	-	SaurJH9_0466	-	putative lipoprotein
457	 30.14	0	498986..499768	+	260	148266904	-	SaurJH9_0467	-	putative lipoprotein
458	 30.75	0	499950..500762	+	270	148266905	-	SaurJH9_0468	-	putative lipoprotein
459	 30.47	0	500752..502077	+	441	148266906	-	SaurJH9_0469	-	hypothetical protein
460	 27.47	-1	502074..502397	+	107	148266907	-	SaurJH9_0470	-	hypothetical protein
461	 31.75	0	502416..502730	+	104	148266908	-	SaurJH9_0471	-	hypothetical protein
462	 30.26	0	503019..503213	-	64	148266909	-	SaurJH9_0472	-	hypothetical protein
463	 36.24	0	503398..504600	+	400	148266910	-	SaurJH9_0473	-	cobalamin synthesis protein, P47K
464	 37.51	+1	506187..507671	+	494	148266911	-	SaurJH9_0474	-	NADH dehydrogenase subunit 5
465	 38.80	+1	507684..510389	+	901	148266912	-	SaurJH9_0475	-	hypothetical protein
466	 34.16	0	510551..510913	+	120	148266913	-	SaurJH9_0476	-	hypothetical protein
467	 26.86	-1	511142..511558	-	138	148266914	-	SaurJH9_0477	-	hypothetical protein
468	 34.22	0	511596..512270	+	224	148266915	-	SaurJH9_0478	-	hypothetical protein
469	 33.74	0	512307..513041	+	244	148266916	-	SaurJH9_0479	-	hypothetical protein
470	 34.53	0	513410..514750	+	446	148266917	-	SaurJH9_0480	-	sodium:neurotransmitter symporter
471	 39.08	+1	514916..515872	+	318	148266918	-	SaurJH9_0481	-	pyridoxal-5'-phosphate-dependent enzyme, beta subunit
472	 36.13	0	515865..517007	+	380	148266919	-	SaurJH9_0482	-	cystathionine gamma-synthase
473	 35.18	0	517299..518327	+	342	148266920	-	SaurJH9_0483	-	ABC transporter related
474	 36.67	+1	518331..518990	+	219	148266921	-	SaurJH9_0484	-	binding-protein-dependent transport systems inner membrane component
475	 32.86	0	519027..519869	+	280	148266922	-	SaurJH9_0485	-	NLPA lipoprotein
476	 36.62	+1	520201..521205	+	334	148266923	-	SaurJH9_0486	-	CHAP domain-containing protein
477	 32.96	0	521390..521659	-	89	148266924	-	SaurJH9_0487	-	hypothetical protein
478	 34.09	0	521808..522203	+	131	148266925	-	SaurJH9_0488	-	NUDIX hydrolase
479	 36.01	0	522193..522678	+	161	148266926	-	SaurJH9_0489	-	GCN5-related N-acetyltransferase
480	 32.44	0	522847..523629	-	260	148266927	-	SaurJH9_0490	-	hypothetical protein
481	 33.42	0	523626..524738	-	370	148266928	-	SaurJH9_0491	-	hypothetical protein
482	 33.11	0	524859..525743	-	294	148266929	-	SaurJH9_0492	-	LysR family transcriptional regulator
483	 37.67	+1	525924..530423	+	1499	148266930	-	SaurJH9_0493	-	glutamate synthase (ferredoxin)
484	 38.39	+1	530441..531904	+	487	148266931	gltD	SaurJH9_0494	-	glutamate synthase subunit beta
485	 37.18	+1	532734..534161	+	475	148266932	-	SaurJH9_0495	-	PTS system, trehalose-specific IIBC subunit
486	 36.26	0	534225..535865	+	546	148266933	-	SaurJH9_0496	-	alpha,alpha-phosphotrehalase
487	 33.74	0	535890..536618	+	242	148266934	-	SaurJH9_0497	-	GntR family transcriptional regulator
488	 33.14	0	537261..537785	+	174	148266935	-	SaurJH9_0498	-	GCN5-related N-acetyltransferase
489	 36.28	0	537854..539551	+	565	148266936	-	SaurJH9_0499	-	DNA polymerase III, subunits gamma and tau
490	 39.62	+1	539641..539958	+	105	148266937	-	SaurJH9_0500	-	hypothetical protein
491	 36.35	0	539965..540561	+	198	148266938	recR	SaurJH9_0501	-	recombination protein RecR
492	 33.03	0	547352..548689	+	445	148266939	-	SaurJH9_0502	-	Orn/Lys/Arg decarboxylase, major region
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.