IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
354	 32.00	0	397607..397906	+	99	148266801	-	SaurJH9_0362	-	hypothetical protein
355	 38.19	+1	398043..399917	+	624	148266802	-	SaurJH9_0363	-	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
356	 33.93	0	399930..401102	+	390	148266803	-	SaurJH9_0364	-	hypothetical protein
357	 32.59	0	401099..401503	+	134	148266804	-	SaurJH9_0365	-	hypothetical protein
358	 38.13	+1	401559..401996	+	145	148266805	-	SaurJH9_0366	-	phage phi LC3 family holin
359	 40.53	+2	401977..403422	+	481	148266806	-	SaurJH9_0367	-	N-acetylmuramoyl-L-alanine amidase
360	 39.02	+1	404190..404312	+	40	148266807	-	SaurJH9_0368	-	hypothetical protein
361	 34.06	0	404554..405381	-	275	148266808	-	SaurJH9_0369	-	hypothetical protein
362	 39.50	+1	405454..406653	-	399	148266809	-	SaurJH9_0370	-	NADH:flavin oxidoreductase/NADH oxidase
363	 23.66	-2	406749..406841	+	30	148266810	-	SaurJH9_0371	-	hypothetical protein
364	 37.62	+1	406955..407956	+	333	148266811	-	SaurJH9_0372	-	luciferase family protein
365	 36.34	0	407990..408322	+	110	148266812	-	SaurJH9_0373	-	glycine cleavage H-protein
366	 36.33	0	408323..409123	+	266	148266813	-	SaurJH9_0374	-	hypothetical protein
367	 37.04	+1	409113..410057	+	314	148266814	-	SaurJH9_0375	-	Sir2 family NAD-dependent protein deacetylase-like protein
368	 34.12	0	410035..411057	+	340	148266815	-	SaurJH9_0376	-	lipoyltransferase and lipoate-protein ligase
369	 35.28	0	411373..412398	+	341	148266816	-	SaurJH9_0377	-	3-beta hydroxysteroid dehydrogenase/isomerase
370	 37.94	+1	412492..413838	-	448	148266817	ulaA	SaurJH9_0378	-	ascorbate-specific PTS system enzyme IIC
371	 35.44	0	413853..414137	-	94	148266818	-	SaurJH9_0379	-	phosphotransferase system, lactose/cellobiose-specific IIB subunit
372	 35.36	0	414139..414582	-	147	148266819	-	SaurJH9_0380	-	putative PTS IIA-like nitrogen-regulatory protein PtsN
373	 34.56	0	414587..416542	-	651	148266820	-	SaurJH9_0381	-	transcriptional antiterminator, BglG
374	 33.33	0	416754..417173	+	139	148266821	-	SaurJH9_0382	-	MarR family transcriptional regulator
375	 32.82	0	417280..418635	+	451	148266822	-	SaurJH9_0383	-	MATE efflux family protein
376	 29.25	-1	418739..419179	+	146	148266823	-	SaurJH9_0384	-	hypothetical protein
377	 37.09	+1	419262..420620	-	452	148266824	-	SaurJH9_0385	-	glycerol-3-phosphate transporter
378	 34.30	0	420932..421858	+	308	148266825	-	SaurJH9_0386	-	glyoxalase/bleomycin resistance protein/dioxygenase
379	 36.63	+1	421872..422933	+	353	148266826	-	SaurJH9_0387	-	luciferase family protein
380	 33.33	0	422947..423513	+	188	148266827	-	SaurJH9_0388	-	NADPH-dependent FMN reductase
381	 34.94	0	423572..424567	-	331	148266828	-	SaurJH9_0389	-	hypothetical protein
382	 35.16	0	424932..425477	+	181	148266829	-	SaurJH9_0390	-	GCN5-related N-acetyltransferase
383	 30.99	0	425744..426598	+	284	148266830	-	SaurJH9_0391	-	hypothetical protein
384	 37.24	+1	426595..427824	+	409	148266831	-	SaurJH9_0392	-	Dyp-type peroxidase family protein
385	 34.27	0	427805..429517	+	570	148266832	-	SaurJH9_0393	-	hypothetical protein
386	 33.50	0	429758..430363	-	201	148266833	-	SaurJH9_0394	-	Sec-independent periplasmic protein translocase
387	 36.57	+1	430476..430691	-	71	148266834	-	SaurJH9_0395	-	twin arginine-targeting protein translocase
388	 33.33	0	430800..431189	-	129	148266835	-	SaurJH9_0396	-	hypothetical protein
389	 39.71	+2	431429..431632	+	67	148266836	-	SaurJH9_0397	-	XRE family transcriptional regulator
390	 31.65	0	431629..432342	+	237	148266837	-	SaurJH9_0398	-	hypothetical protein
391	 31.79	0	432367..433209	+	280	148266838	-	SaurJH9_0399	-	ABC transporter related
392	 32.54	0	433209..433838	+	209	148266839	-	SaurJH9_0400	-	hypothetical protein
393	 31.75	0	434225..435358	-	377	148266840	-	SaurJH9_0401	-	hypothetical protein
394	 38.41	+1	435897..437078	+	393	148266841	-	SaurJH9_0402	-	acetyl-CoA acetyltransferase
395	 37.45	+1	437161..437913	-	250	148266842	-	SaurJH9_0403	-	hypothetical protein
396	 34.41	0	437956..440184	-	742	148266843	-	SaurJH9_0404	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
397	 36.10	0	440181..442022	-	613	148266844	-	SaurJH9_0405	-	bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein
398	 37.90	+1	441991..443151	-	386	148266845	-	SaurJH9_0406	-	cystathionine gamma-synthase
399	 35.42	0	443148..444251	-	367	148266846	-	SaurJH9_0407	-	cystathionine gamma-synthase
400	 33.81	0	444922..445758	+	278	148266847	-	SaurJH9_0408	-	parB-like partition protein
401	 31.41	0	445912..446793	+	293	148266848	-	SaurJH9_0409	-	hypothetical protein
402	 30.88	0	446823..447026	+	67	148266849	-	SaurJH9_0410	-	hypothetical protein
403	 35.34	0	447038..448135	+	365	148266850	-	SaurJH9_0411	-	translation-associated GTPase
404	 32.29	0	448221..448412	-	63	148266851	-	SaurJH9_0412	-	hypothetical protein
405	 38.05	+1	448656..448952	+	98	148266852	rpsF	SaurJH9_0413	-	30S ribosomal protein S6
406	 38.29	+1	448973..449476	+	167	148266853	-	SaurJH9_0414	-	single-strand binding protein
407	 37.04	+1	449528..449770	+	80	148266854	rpsR	SaurJH9_0415	-	30S ribosomal protein S18
408	 28.00	-1	450047..451021	-	324	148266855	-	SaurJH9_0416	-	Abi family protein
409	 32.62	0	451443..451583	-	46	148266856	-	SaurJH9_0418	-	hypothetical protein
410	 29.90	0	451943..452554	+	203	148266857	-	SaurJH9_0419	-	hypothetical protein
411	 31.44	0	452923..453291	+	122	148266858	-	SaurJH9_0420	-	hypothetical protein
412	 30.89	0	453472..454044	+	190	148266859	-	SaurJH9_0421	-	hypothetical protein
413	 29.17	-1	454181..454444	-	87	148266860	-	SaurJH9_0422	-	hypothetical protein
414	 36.90	+1	454744..454995	+	83	148266861	-	SaurJH9_0423	-	hypothetical protein
415	 31.96	0	455421..456002	+	193	148266862	-	SaurJH9_0424	-	phosphoglycerate mutase
416	 31.01	0	456068..456454	-	128	148266863	-	SaurJH9_0425	-	hypothetical protein
417	 30.46	0	456721..457347	-	208	148266864	-	SaurJH9_0426	-	hypothetical protein
418	 32.93	0	457420..457665	-	81	148266865	-	SaurJH9_0427	-	hypothetical protein
419	 37.99	+1	457791..459314	-	507	148266866	-	SaurJH9_0428	-	alkyl hydroperoxide reductase subunit F
420	 37.19	+1	459330..459899	-	189	148266867	-	SaurJH9_0429	-	alkyl hydroperoxide reductase subunit C
421	 37.43	+1	460391..461146	+	251	148266868	-	SaurJH9_0430	-	nitroreductase
422	 39.31	+1	461226..462614	-	462	148266869	-	SaurJH9_0431	-	sodium:dicarboxylate symporter
423	 37.62	+1	463592..464548	-	318	148266870	-	SaurJH9_0432	-	hypothetical protein
424	 30.17	0	464666..465328	-	220	148266871	-	SaurJH9_0433	-	hypothetical protein
425	 32.84	0	465471..465878	-	135	148266872	-	SaurJH9_0434	-	hypothetical protein
426	 35.58	0	466391..466969	+	192	148266873	-	SaurJH9_0435	-	xanthine phosphoribosyltransferase
427	 35.54	0	466969..468237	+	422	148266874	-	SaurJH9_0436	-	uracil-xanthine permease
428	 37.29	+1	468275..469741	+	488	148266875	-	SaurJH9_0437	-	inosine-5'-monophosphate dehydrogenase
429	 37.29	+1	469766..471307	+	513	148266876	guaA	SaurJH9_0438	-	bifunctional GMP synthase/glutamine amidotransferase protein
430	 27.56	-1	471420..471956	-	178	148266877	-	SaurJH9_0439	-	hypothetical protein
431	 27.80	-1	472348..473052	-	234	148266878	-	SaurJH9_0440	-	hypothetical protein
432	 25.27	-2	473451..473723	-	90	148266879	-	SaurJH9_0441	-	transposase IS3/IS911 family protein
433	 27.78	-1	473984..474145	-	53	148266880	-	SaurJH9_0442	-	hypothetical protein
434	 32.50	0	474668..475027	-	119	148266881	-	SaurJH9_0443	-	hypothetical protein
435	 34.87	0	475046..475891	-	281	148266882	-	SaurJH9_0444	-	hypothetical protein
436	 30.84	0	476363..477043	+	226	148266883	-	SaurJH9_0445	-	superantigen-like protein
437	 29.31	-1	477329..478024	+	231	148266884	-	SaurJH9_0446	-	superantigen-like protein
438	 34.55	0	478315..479385	+	356	148266885	-	SaurJH9_0447	-	superantigen-like protein
439	 33.45	0	479749..480627	+	292	148266886	-	SaurJH9_0448	-	superantigen-like protein
440	 31.77	0	480991..481695	+	234	148266887	-	SaurJH9_0449	-	superantigen-like protein 5
441	 30.32	0	482141..482836	+	231	148266888	-	SaurJH9_0450	-	superantigen-like protein 7
442	 28.61	-1	483175..483873	+	232	148266889	-	SaurJH9_0451	-	superantigen-like protein
443	 29.76	-1	484250..484948	+	232	148266890	-	SaurJH9_0452	-	superantigen-like protein
444	 29.39	-1	485314..485997	+	227	148266891	-	SaurJH9_0453	-	superantigen-like protein
445	 38.21	+1	486261..487817	+	518	148266892	-	SaurJH9_0454	-	type I restriction-modification system, M subunit
446	 29.21	-1	487810..489021	+	403	148266893	-	SaurJH9_0455	-	restriction modification system DNA specificity subunit
447	 29.82	0	489404..490087	+	227	148266894	-	SaurJH9_0456	-	superantigen-like protein
448	 31.79	0	490109..491596	+	495	148266895	-	SaurJH9_0457	-	hypothetical protein
449	 34.63	0	491705..492013	-	102	148266896	-	SaurJH9_0458	-	hypothetical protein
450	 29.07	-1	492380..493153	+	257	148266897	-	SaurJH9_0459	-	putative lipoprotein
451	 27.92	-1	493184..493978	+	264	148266898	-	SaurJH9_0460	-	putative lipoprotein
452	 30.15	0	494026..494811	+	261	148266899	-	SaurJH9_0461	-	putative lipoprotein
453	 30.28	0	495678..496463	+	261	148266900	-	SaurJH9_0463	-	putative lipoprotein
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.