IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.08   STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 32.67	0	572..1933	+	453	148266448	dnaA	SaurJH9_0001	-	chromosomal replication initiation protein
2	 32.80	0	2211..3344	+	377	148266449	-	SaurJH9_0002	-	DNA polymerase III subunit beta
3	 35.86	0	3734..3970	+	78	148266450	-	SaurJH9_0003	-	S4 region, YaaA
4	 33.69	0	3967..5079	+	370	148266451	recF	SaurJH9_0004	-	recombination protein F
5	 36.87	+1	5101..7023	+	640	148266452	-	SaurJH9_0005	-	DNA gyrase, B subunit
6	 36.70	+1	7060..9729	+	889	148266453	-	SaurJH9_0006	-	DNA gyrase, A subunit
7	 36.53	+1	9817..10629	-	270	148266454	-	SaurJH9_0007	-	hypothetical protein
8	 37.03	+1	10955..12469	+	504	148266455	-	SaurJH9_0008	-	histidine ammonia-lyase
9	 34.42	0	12848..14134	+	428	148266456	-	SaurJH9_0009	-	seryl-tRNA synthetase
10	 37.07	+1	14785..15480	+	231	148266457	-	SaurJH9_0010	-	hypothetical protein
11	 33.94	0	15477..15806	+	109	148266458	-	SaurJH9_0011	-	hypothetical protein
12	 35.50	0	16169..17137	+	322	148266459	-	SaurJH9_0012	-	alpha/beta hydrolase fold
13	 33.33	0	17430..18368	+	312	148266460	-	SaurJH9_0013	-	hypothetical protein
14	 35.16	0	18383..20350	+	655	148266461	-	SaurJH9_0014	-	hypothetical protein
15	 31.54	0	20347..20793	+	148	148266462	rplI	SaurJH9_0015	-	50S ribosomal protein L9
16	 38.26	+1	20825..22225	+	466	148266463	-	SaurJH9_0016	-	replicative DNA helicase
17	 36.60	+1	22503..23786	+	427	148266464	-	SaurJH9_0017	-	adenylosuccinate synthetase
18	 36.47	+1	24989..25690	+	233	148266465	-	SaurJH9_0018	-	two component transcriptional regulator
19	 34.92	0	25703..27529	+	608	148266466	-	SaurJH9_0019	-	multi-sensor signal transduction histidine kinase
20	 35.20	0	27678..28856	+	392	148266467	-	SaurJH9_0020	-	hypothetical protein
21	 32.70	0	28857..29645	+	262	148266468	-	SaurJH9_0021	-	hypothetical protein
22	 35.96	0	30034..30834	+	266	148266469	-	SaurJH9_0022	-	beta-lactamase domain-containing protein
23	 38.38	+1	31061..33379	+	772	148266470	-	SaurJH9_0023	-	cell wall anchor domain-containing protein
24	 39.38	+1	33747..34226	+	159	148266471	-	SaurJH9_0024	-	hypothetical protein
25	 28.48	-1	34548..35804	+	418	148266472	-	SaurJH9_0025	-	hypothetical protein
26	 34.37	0	36490..37164	-	224	148266473	-	SaurJH9_0026	-	integrase catalytic subunit
27	 33.47	0	37429..38172	+	247	148266474	-	SaurJH9_0027	-	glycerophosphodiester phosphodiesterase
28	 29.14	-1	38269..38697	+	142	148266475	-	SaurJH9_0028	-	dehydratase
29	 30.59	0	38743..40749	-	668	148266476	-	SaurJH9_0029	-	peptidoglycan glycosyltransferase
30	 28.61	-1	40849..42606	+	585	148266477	-	SaurJH9_0030	-	Beta-lactamase
31	 25.81	-2	42606..42977	+	123	148266478	-	SaurJH9_0031	-	CopY family transcriptional regulator
32	 29.28	-1	43485..44594	+	369	148266479	-	SaurJH9_0032	-	ROK family protein
33	 32.30	0	46075..47139	-	354	148266480	-	SaurJH9_0035	-	rhodanese domain-containing protein
34	 24.90	-2	47275..47535	+	86	148266481	-	SaurJH9_0036	-	hypothetical protein
35	 32.87	0	47535..48179	+	214	148266482	-	SaurJH9_0037	-	hypothetical protein
36	 34.39	0	48518..49180	-	220	148266483	-	SaurJH9_0038	-	methyltransferase type 12
37	 32.51	0	49676..50407	+	243	148266484	-	SaurJH9_0039	-	rRNA (adenine-N(6)-)-methyltransferase
38	 36.40	+1	50533..51315	-	260	148266485	-	SaurJH9_0040	-	3''-adenylyltransferase
39	 29.89	0	51466..51843	-	125	148266486	-	SaurJH9_0041	-	hypothetical protein
40	 33.86	0	51850..53742	-	630	148266487	-	SaurJH9_0042	-	phage integrase family protein
41	 32.14	0	53739..54824	-	361	148266488	-	SaurJH9_0043	-	phage integrase family protein
42	 33.96	0	54943..55260	-	105	148266489	-	SaurJH9_0044	-	DNA repair protein RadC
43	 36.29	0	55281..55787	-	168	148266490	-	SaurJH9_0045	-	hypothetical protein
44	 32.05	0	55805..56116	-	103	148266491	-	SaurJH9_0046	-	hypothetical protein
45	 34.76	0	56203..56553	-	116	148266492	-	SaurJH9_0047	-	hypothetical protein
46	 34.99	0	57071..58699	-	542	148266493	-	SaurJH9_0048	-	resolvase domain-containing protein
47	 34.81	0	58721..60070	-	449	148266494	-	SaurJH9_0049	-	resolvase domain-containing protein
48	 34.73	0	60304..62097	-	597	148266495	-	SaurJH9_0050	-	hypothetical protein
49	 34.68	0	62097..62393	-	98	148266496	-	SaurJH9_0051	-	hypothetical protein
50	 25.12	-2	62586..63632	-	348	148266497	-	SaurJH9_0052	-	hypothetical protein
51	 31.91	0	63883..64305	-	140	148266498	-	SaurJH9_0053	-	integrase catalytic subunit
52	 30.23	0	64372..64725	-	117	148266499	-	SaurJH9_0054	-	hypothetical protein
53	 30.79	0	64710..65024	-	104	148266500	-	SaurJH9_0055	-	hypothetical protein
54	 36.88	+1	65535..66437	-	300	148266501	-	SaurJH9_0056	-	C4-dicarboxylate anaerobic carrier
55	 37.36	+1	67183..67878	-	231	148266502	-	SaurJH9_0057	-	two component transcriptional regulator
56	 36.63	+1	67853..70522	-	889	148266503	-	SaurJH9_0058	-	osmosensitive K+ channel signal transduction histidine kinase
57	 36.79	+1	70790..72466	+	558	148266504	-	SaurJH9_0059	-	potassium-transporting ATPase subunit A
58	 39.76	+2	72485..74506	+	673	148266505	-	SaurJH9_0060	-	K+-transporting ATPase, B subunit
59	 36.74	+1	74522..75079	+	185	148266506	-	SaurJH9_0061	-	potassium-transporting ATPase, C subunit
60	 26.94	-1	77599..78036	-	145	148266507	-	SaurJH9_0063	-	hypothetical protein
61	 30.56	0	78141..78428	-	95	148266508	-	SaurJH9_0064	-	hypothetical protein
62	 29.67	-1	78518..79144	-	208	148266509	-	SaurJH9_0065	-	hypothetical protein
63	 31.21	0	79259..80767	+	502	148266510	-	SaurJH9_0066	-	protein kinase
64	 21.51	-2	81115..81207	+	30	148266511	-	SaurJH9_0067	-	hypothetical protein
65	 25.60	-2	81354..83099	+	581	148266512	-	SaurJH9_0068	-	hypothetical protein
66	 31.48	0	84043..84798	-	251	148266513	-	SaurJH9_0071	-	hypothetical protein
67	 30.65	0	84798..85058	-	86	148266514	-	SaurJH9_0072	-	hypothetical protein
68	 31.64	0	85195..86259	+	354	148266515	-	SaurJH9_0073	-	rhodanese domain-containing protein
69	 33.48	0	86290..87624	+	444	148266516	-	SaurJH9_0074	-	beta-lactamase domain-containing protein
70	 32.66	0	87643..88836	+	397	148266517	-	SaurJH9_0075	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
71	 31.37	0	89103..89204	-	33	148266518	-	SaurJH9_0076	-	hypothetical protein
72	 38.91	+1	89503..90489	-	328	148266519	-	SaurJH9_0077	-	hypothetical protein
73	 30.30	0	91050..91346	+	98	148266520	-	SaurJH9_0078	-	TfoX domain-containing protein
74	 30.85	0	91554..92156	+	200	148266521	-	SaurJH9_0079	-	hypothetical protein
75	 31.88	0	95627..96109	+	160	148266522	-	SaurJH9_0082	-	hypothetical protein
76	 33.74	0	96315..97301	+	328	148266523	-	SaurJH9_0083	-	phosphatidylinositol diacylglycerol-lyase
77	 30.09	0	97522..98292	+	256	148266524	-	SaurJH9_0084	-	putative lipoprotein
78	 29.73	-1	98311..99114	+	267	148266525	-	SaurJH9_0085	-	putative lipoprotein
79	 29.95	0	99182..99949	+	255	148266526	-	SaurJH9_0086	-	putative lipoprotein
80	 28.91	-1	100017..100784	+	255	148266527	-	SaurJH9_0087	-	putative lipoprotein
81	 30.86	0	100851..101618	+	255	148266528	-	SaurJH9_0088	-	putative lipoprotein
82	 33.69	0	101715..103952	+	745	148266529	-	SaurJH9_0089	-	helix-turn-helix domain-containing protein
83	 37.23	+1	104103..105281	+	392	148266530	-	SaurJH9_0090	-	amidohydrolase
84	 36.79	+1	105283..106671	+	462	148266531	-	SaurJH9_0091	-	major facilitator transporter
85	 36.09	0	107155..108822	-	555	148266532	-	SaurJH9_0092	-	Na/Pi-cotransporter II-related protein
86	 35.81	0	109141..110916	-	591	148266533	-	SaurJH9_0093	-	67 kDa myosin-cross-reactive antigen family protein
87	 30.81	0	111090..111962	-	290	148266534	-	SaurJH9_0094	-	hypothetical protein
88	 29.42	-1	112144..113472	+	442	148266535	-	SaurJH9_0095	-	GntR family transcriptional regulator
89	 29.54	-1	113662..114135	+	157	148266536	-	SaurJH9_0096	-	hypothetical protein
90	 34.59	0	114397..115989	+	530	148266537	-	SaurJH9_0097	-	L-lactate transport
91	 38.20	+1	116318..117880	-	520	148266538	-	SaurJH9_0098	-	cell wall anchor domain-containing protein
92	 27.49	-1	118265..119017	-	250	148266539	-	SaurJH9_0099	-	SarA family transcriptional regulator
93	 36.74	+1	119386..120384	-	332	148266540	-	SaurJH9_0100	-	transport system permease protein
94	 38.45	+1	120381..121376	-	331	148266541	-	SaurJH9_0101	-	transport system permease protein
95	 32.23	0	121392..122384	-	330	148266542	-	SaurJH9_0102	-	periplasmic binding protein
96	 36.90	+1	122615..123595	+	326	148266543	-	SaurJH9_0103	-	pyridoxal-5'-phosphate-dependent enzyme, beta subunit
97	 37.19	+1	123592..124602	+	336	148266544	-	SaurJH9_0104	-	ornithine cyclodeaminase
98	 35.95	0	124623..126377	+	584	148266545	-	SaurJH9_0105	-	IucA/IucC family protein
99	 39.14	+1	126370..127626	+	418	148266546	-	SaurJH9_0106	-	major facilitator transporter
100	 36.33	0	127616..129352	+	578	148266547	-	SaurJH9_0107	-	IucA/IucC family protein
33.08	MEAN

3.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.