IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
246	 37.70	+1	306625..307539	-	304	148266693	-	SaurJH9_0253	-	ribokinase
247	 32.59	0	307567..307971	-	134	148266694	-	SaurJH9_0254	-	D-ribose pyranase
248	 37.98	+1	307986..308867	-	293	148266695	-	SaurJH9_0255	-	sugar transport family protein
249	 37.24	+1	309099..310097	-	332	148266696	-	SaurJH9_0256	-	regulatory protein, LacI
250	 26.72	-1	310477..310869	+	130	148266697	-	SaurJH9_0257	-	hypothetical protein
251	 37.69	+1	310997..312373	-	458	148266698	-	SaurJH9_0258	-	major facilitator transporter
252	 35.95	0	312607..313599	+	330	148266699	-	SaurJH9_0259	-	penicillin amidase
253	 39.75	+2	313925..314875	+	316	148266700	-	SaurJH9_0260	-	peptidoglycan hydrolase
254	 31.36	0	314927..315586	-	219	148266701	-	SaurJH9_0261	-	ABC transporter related
255	 31.38	0	315600..316520	-	306	148266702	-	SaurJH9_0262	-	hypothetical protein
256	 32.22	0	316517..317683	-	388	148266703	-	SaurJH9_0263	-	hypothetical protein
257	 29.00	-1	317751..319274	-	507	148266704	-	SaurJH9_0264	-	hypothetical protein
258	 37.21	+1	319605..320507	-	300	148266705	-	SaurJH9_0265	-	CHAP domain-containing protein
259	 37.76	+1	320746..321039	+	97	148266706	-	SaurJH9_0266	-	hypothetical protein
260	 30.79	0	321122..324151	+	1009	148266707	-	SaurJH9_0267	-	hypothetical protein
261	 32.46	0	324151..324609	+	152	148266708	-	SaurJH9_0268	-	hypothetical protein
262	 29.22	-1	324581..324823	+	80	148266709	-	SaurJH9_0269	-	hypothetical protein
263	 29.81	0	324836..326170	+	444	148266710	-	SaurJH9_0270	-	hypothetical protein
264	 33.90	0	326192..330631	+	1479	148266711	-	SaurJH9_0271	-	cell divisionFtsK/SpoIIIE
265	 31.04	0	330661..331053	+	130	148266712	-	SaurJH9_0272	-	hypothetical protein
266	 38.41	+1	331069..331383	+	104	148266713	-	SaurJH9_0273	-	hypothetical protein
267	 29.06	-1	331380..332057	+	225	148266714	-	SaurJH9_0274	-	hypothetical protein
268	 37.11	+1	332057..332374	+	105	148266715	-	SaurJH9_0275	-	hypothetical protein
269	 34.96	0	332384..334228	+	614	148266716	-	SaurJH9_0276	-	hypothetical protein
270	 31.30	0	334239..334730	+	163	148266717	-	SaurJH9_0277	-	hypothetical protein
271	 27.34	-1	334933..335616	+	227	148266718	-	SaurJH9_0278	-	hypothetical protein
272	 28.10	-1	335762..336373	+	203	148266719	-	SaurJH9_0279	-	hypothetical protein
273	 26.94	-1	336508..336726	+	72	148266720	-	SaurJH9_0280	-	hypothetical protein
274	 29.54	-1	336858..337358	+	166	148266721	-	SaurJH9_0281	-	hypothetical protein
275	 29.74	-1	337369..337869	+	166	148266722	-	SaurJH9_0282	-	hypothetical protein
276	 29.44	-1	337880..338341	+	153	148266723	-	SaurJH9_0283	-	hypothetical protein
277	 29.94	0	338390..338890	+	166	148266724	-	SaurJH9_0284	-	hypothetical protein
278	 30.45	0	338901..339386	+	161	148266725	-	SaurJH9_0285	-	hypothetical protein
279	 26.72	-1	340008..340385	+	125	148266726	-	SaurJH9_0286	-	hypothetical protein
280	 31.58	0	340535..340933	+	132	148266727	-	SaurJH9_0287	-	hypothetical protein
281	 33.33	0	341149..341994	-	281	148266728	-	SaurJH9_0288	-	formate/nitrite transporter
282	 35.17	0	342210..343517	-	435	148266729	-	SaurJH9_0289	-	branched-chain amino acid transport system II carrier protein
283	 33.11	0	344101..344991	+	296	148266730	-	SaurJH9_0290	-	5'-nucleotidase
284	 33.14	0	345240..346289	+	349	148266731	-	SaurJH9_0291	-	hypothetical protein
285	 33.48	0	346302..346979	+	225	148266732	-	SaurJH9_0292	-	ABC transporter related
286	 38.28	+1	347187..348218	+	343	148266733	-	SaurJH9_0293	-	phosphotransferase system fructose-specific IIC component-like protein
287	 34.23	0	348561..349679	+	372	148266734	-	SaurJH9_0294	-	ribokinase-like domain-containing protein
288	 38.20	+1	349654..350577	+	307	148266735	-	SaurJH9_0295	-	hypothetical protein
289	 32.84	0	350588..351808	+	406	148266736	-	SaurJH9_0296	-	Na+ dependent nucleoside transporter
290	 35.55	0	351913..353445	-	510	148266737	-	SaurJH9_0297	-	SSS family solute/sodium (Na+) symporter
291	 35.26	0	353485..354366	-	293	148266738	-	SaurJH9_0298	-	N-acetylneuraminate lyase
292	 37.51	+1	354524..355384	+	286	148266739	-	SaurJH9_0299	-	ROK family protein
293	 33.46	0	355661..356461	-	266	148266740	-	SaurJH9_0300	-	RpiR family transcriptional regulator
294	 38.12	+1	356601..357269	+	222	148266741	-	SaurJH9_0301	-	N-acetylmannosamine-6-phosphate 2-epimerase
295	 36.07	0	357400..358713	-	437	148266742	-	SaurJH9_0302	-	nucleoside recognition domain-containing protein
296	 37.62	+1	359131..361068	+	645	148266743	-	SaurJH9_0303	-	triacylglycerol lipase
297	 31.92	0	361159..362364	-	401	148266744	-	SaurJH9_0304	-	phage integrase family protein
298	 23.33	-2	362475..362654	+	59	148266745	-	SaurJH9_0305	-	hypothetical protein
299	 34.26	0	362669..362776	-	35	148266746	-	SaurJH9_0306	-	hypothetical protein
300	 28.05	-1	362780..363271	-	163	148266747	-	SaurJH9_0307	-	hypothetical protein
301	 33.77	0	363292..363753	-	153	148266748	-	SaurJH9_0308	-	hypothetical protein
302	 32.41	0	363766..364089	-	107	148266749	-	SaurJH9_0309	-	XRE family transcriptional regulator
303	 31.33	0	364253..364501	+	82	148266750	-	SaurJH9_0310	-	XRE family transcriptional regulator
304	 29.01	-1	364516..364677	+	53	148266751	-	SaurJH9_0311	-	hypothetical protein
305	 34.93	0	365544..366296	+	250	148266752	-	SaurJH9_0312	-	phage antirepressor protein
306	 40.64	+2	366312..366530	+	72	148266753	-	SaurJH9_0313	-	hypothetical protein
307	 31.44	0	366560..366823	+	87	148266754	-	SaurJH9_0314	-	hypothetical protein
308	 35.19	0	366835..366996	+	53	148266755	-	SaurJH9_0315	-	hypothetical protein
309	 31.68	0	367091..367393	+	100	148266756	-	SaurJH9_0316	-	hypothetical protein
310	 32.57	0	367398..367658	+	86	148266757	-	SaurJH9_0317	-	hypothetical protein
311	 32.58	0	367667..367930	+	87	148266758	-	SaurJH9_0318	-	hypothetical protein
312	 30.61	0	367939..369882	+	647	148266759	-	SaurJH9_0319	-	hypothetical protein
313	 34.53	0	369884..370804	+	306	148266760	-	SaurJH9_0320	-	RecT protein
314	 35.88	0	371503..371973	+	156	148266761	-	SaurJH9_0322	-	single-strand binding protein
315	 33.67	0	372003..372896	+	297	148266762	-	SaurJH9_0323	-	primosome, DnaD subunit
316	 29.68	-1	372903..373121	+	72	148266763	-	SaurJH9_0324	-	hypothetical protein
317	 36.30	0	373130..373534	+	134	148266764	-	SaurJH9_0325	-	endodeoxyribonuclease RusA
318	 38.75	+1	373547..373915	+	122	148266765	-	SaurJH9_0326	-	PVL ORF-50 family protein
319	 38.68	+1	373919..374161	+	80	148266766	-	SaurJH9_0327	-	phage conserved Open Reading Frame 51
320	 31.48	0	374166..374381	+	71	148266767	-	SaurJH9_0328	-	hypothetical protein
321	 34.58	0	374384..374785	+	133	148266768	-	SaurJH9_0329	-	hypothetical protein
322	 28.74	-1	374782..375129	+	115	148266769	-	SaurJH9_0330	-	hypothetical protein
323	 32.69	0	375126..375434	+	102	148266770	-	SaurJH9_0331	-	hypothetical protein
324	 38.55	+1	375427..375675	+	82	148266771	-	SaurJH9_0332	-	hypothetical protein
325	 31.28	0	375668..376204	+	178	148266772	-	SaurJH9_0333	-	dUTPase
326	 35.02	0	376241..376477	+	78	148266773	-	SaurJH9_0334	-	hypothetical protein
327	 30.80	0	376502..376738	+	78	148266774	-	SaurJH9_0335	-	hypothetical protein
328	 30.51	0	376728..377117	+	129	148266775	-	SaurJH9_0336	-	hypothetical protein
329	 39.08	+1	377114..377287	+	57	148266776	-	SaurJH9_0337	-	transcriptional activator RinB
330	 27.87	-1	377288..377653	+	121	148266777	-	SaurJH9_0338	-	hypothetical protein
331	 32.65	0	377654..377800	+	48	148266778	-	SaurJH9_0339	-	hypothetical protein
332	 32.39	0	377824..378246	+	140	148266779	-	SaurJH9_0340	-	RinA family phage transcriptional regulator
333	 36.16	0	378574..379068	+	164	148266780	-	SaurJH9_0341	-	hypothetical protein
334	 34.24	0	379061..380269	+	402	148266781	-	SaurJH9_0342	-	PBSX family phage terminase large subunit
335	 35.94	0	380283..381701	+	472	148266782	-	SaurJH9_0343	-	SPP1 family phage portal protein
336	 38.32	+1	381658..382620	+	320	148266783	-	SaurJH9_0344	-	SPP1 family phage head morphogenesis protein
337	 36.52	+1	382718..383314	+	198	148266784	-	SaurJH9_0345	-	phage minor structural GP20
338	 39.03	+1	383335..384159	+	274	148266785	-	SaurJH9_0346	-	hypothetical protein
339	 36.70	+1	384176..384502	+	108	148266786	-	SaurJH9_0347	-	Rho termination factor domain-containing protein
340	 37.78	+1	384502..384816	+	104	148266787	-	SaurJH9_0348	-	hypothetical protein
341	 38.10	+1	384809..385144	+	111	148266788	-	SaurJH9_0349	-	phage head-tail adaptor, putative
342	 39.86	+2	385131..385544	+	137	148266789	-	SaurJH9_0350	-	HK97 family phage protein
343	 35.39	0	385557..385994	+	145	148266790	-	SaurJH9_0351	-	hypothetical protein
344	 39.04	+1	385981..386541	+	186	148266791	-	SaurJH9_0352	-	hypothetical protein
345	 36.97	+1	386603..387097	+	164	148266792	-	SaurJH9_0353	-	hypothetical protein
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.