IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2575	 33.61	0	2764406..2765128	-	240	148269022	-	SaurJH9_2613	-	hypothetical protein
2576	 36.22	0	2765482..2765931	+	149	148269023	-	SaurJH9_2614	-	hypothetical protein
2577	 30.27	0	2766012..2766599	-	195	148269024	-	SaurJH9_2615	-	TetR family transcriptional regulator
2578	 36.78	+1	2766742..2768424	+	560	148269025	-	SaurJH9_2616	-	X-Pro dipeptidyl-peptidase domain-containing protein
2579	 31.63	0	2768522..2769166	-	214	148269026	-	SaurJH9_2617	-	cell wall anchor domain-containing protein
2580	 29.25	-1	2769173..2770249	-	358	148269027	-	SaurJH9_2618	-	peptidase S1 and S6, chymotrypsin/Hap
2581	 32.81	0	2770592..2770975	-	127	148269028	-	SaurJH9_2619	-	aspartate alpha-decarboxylase
2582	 36.27	0	2770977..2771828	-	283	148269029	panC	SaurJH9_2620	-	pantoate--beta-alanine ligase
2583	 36.26	0	2771821..2772639	-	272	148269030	panB	SaurJH9_2621	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2584	 37.40	+1	2772712..2773572	+	286	148269031	-	SaurJH9_2622	-	2-dehydropantoate 2-reductase
2585	 36.31	0	2773658..2774362	-	234	148269032	-	SaurJH9_2623	-	acetolactate decarboxylase
2586	 35.42	0	2774640..2775599	-	319	148269033	-	SaurJH9_2624	-	L-lactate dehydrogenase
2587	 37.27	+1	2776285..2777733	+	482	148269034	-	SaurJH9_2625	-	amino acid permease-associated region
2588	 38.12	+1	2777814..2779151	-	445	148269035	-	SaurJH9_2626	-	4-aminobutyrate aminotransferase
2589	 28.17	-1	2779400..2779825	+	141	148269036	-	SaurJH9_2627	-	hypothetical protein
2590	 33.89	0	2779948..2780838	+	296	148269037	-	SaurJH9_2628	-	fructose-1,6-bisphosphate aldolase
2591	 36.34	0	2781032..2782528	-	498	148269038	-	SaurJH9_2629	-	malate:quinone oxidoreductase
2592	 26.67	-1	2782824..2783153	+	109	148269039	-	SaurJH9_2630	-	hypothetical protein
2593	 36.36	0	2783213..2784832	-	539	148269040	-	SaurJH9_2631	-	AMP-dependent synthetase and ligase
2594	 30.42	0	2785005..2785484	-	159	148269041	-	SaurJH9_2632	-	hypothetical protein
2595	 27.70	-1	2785728..2785940	-	70	148269042	-	SaurJH9_2633	-	hypothetical protein
2596	 38.77	+1	2786218..2787927	-	569	148269043	-	SaurJH9_2634	-	choline dehydrogenase
2597	 36.82	+1	2788188..2789678	-	496	148269044	-	SaurJH9_2635	-	betaine aldehyde dehydrogenase
2598	 35.11	0	2789931..2790494	+	187	148269045	-	SaurJH9_2636	-	hypothetical protein
2599	 35.49	0	2790665..2792287	-	540	148269046	-	SaurJH9_2637	-	choline transporter
2600	 22.22	-2	2792419..2792580	+	53	148269047	-	SaurJH9_2638	-	hypothetical protein
2601	 32.22	0	2792806..2793342	-	178	148269048	-	SaurJH9_2639	-	anaerobic ribonucleoside-triphosphate reductase activating protein
2602	 34.58	0	2793339..2795189	-	616	148269049	-	SaurJH9_2640	-	anaerobic ribonucleoside triphosphate reductase
2603	 36.32	0	2795379..2796749	-	456	148269050	-	SaurJH9_2641	-	CitMHS family citrate/H+ symporter
2604	 37.29	+1	2797242..2797847	-	201	148269051	-	SaurJH9_2642	-	precorrin-2 dehydrogenase
2605	 34.87	0	2797910..2799799	-	629	148269052	-	SaurJH9_2643	-	sulfite reductase (NADPH) flavoprotein, alpha chain
2606	 31.12	0	2800184..2800681	-	165	148269053	-	SaurJH9_2644	-	peroxiredoxin
2607	 31.48	0	2802105..2804105	-	666	148269054	-	SaurJH9_2645	-	hypothetical protein
2608	 34.92	0	2804102..2804857	-	251	148269055	-	SaurJH9_2646	-	ABC transporter related
2609	 29.95	0	2804965..2805852	-	295	148269056	-	SaurJH9_2647	-	integral membrane sensor signal transduction histidine kinase
2610	 29.88	0	2805863..2806528	-	221	148269057	-	SaurJH9_2648	-	two component transcriptional regulator
2611	 31.34	0	2806554..2806754	-	66	148269058	-	SaurJH9_2649	-	hypothetical protein
2612	 35.09	0	2806952..2808376	+	474	148269059	-	SaurJH9_2650	-	alkaline phosphatase
2613	 30.48	0	2808436..2808540	-	34	148269060	-	SaurJH9_2651	-	hypothetical protein
2614	 32.24	0	2808659..2809114	-	151	148269061	-	SaurJH9_2652	-	MarR family transcriptional regulator
2615	 32.94	0	2809359..2810120	-	253	148269062	-	SaurJH9_2653	-	putative esterase
2616	 38.69	+1	2810236..2812869	-	877	148269063	-	SaurJH9_2654	-	cell wall anchor domain-containing protein
2617	 29.22	-1	2813219..2813923	-	234	148269064	-	SaurJH9_2655	-	cyclic nucleotide-binding protein
2618	 37.05	+1	2814022..2814990	-	322	148269065	-	SaurJH9_2656	-	carbamate kinase
2619	 35.15	0	2814980..2816410	-	476	148269066	-	SaurJH9_2657	-	arginine/ornithine antiporter
2620	 33.14	0	2816501..2817511	-	336	148269067	-	SaurJH9_2658	-	ornithine carbamoyltransferase
2621	 34.55	0	2817544..2818779	-	411	148269068	-	SaurJH9_2659	-	arginine deiminase
2622	 29.33	-1	2819126..2819575	-	149	148269069	-	SaurJH9_2660	-	arginine repressor
2623	 35.82	0	2819942..2821471	-	509	148269070	-	SaurJH9_2661	-	zinc metalloproteinase aureolysin
2624	 30.87	0	2821895..2822422	-	175	148269071	-	SaurJH9_2662	-	immunodominant antigen B
2625	 33.55	0	2822680..2823138	+	152	148269072	-	SaurJH9_2663	-	hypothetical protein
2626	 30.99	0	2823378..2825252	+	624	148269073	-	SaurJH9_2664	-	transcriptional antiterminator, BglG
2627	 38.30	+1	2825328..2827280	+	650	148269074	-	SaurJH9_2665	-	PTS system, fructose subfamily, IIC subunit
2628	 35.46	0	2827294..2828232	+	312	148269075	-	SaurJH9_2666	-	mannose-6-phosphate isomerase
2629	 34.88	0	2828344..2831325	-	993	148269076	-	SaurJH9_2667	-	ABC-2 type transporter
2630	 32.74	0	2831536..2833395	+	619	148269077	-	SaurJH9_2668	-	N-acetylmuramoyl-L-alanine amidase
2631	 34.94	0	2833660..2834220	-	186	148269078	-	SaurJH9_2669	-	isochorismatase hydrolase
2632	 32.18	0	2834389..2836296	-	635	148269079	-	SaurJH9_2670	-	cell wall anchor domain-containing protein
2633	 33.26	0	2836537..2837895	-	452	148269080	-	SaurJH9_2671	-	hypothetical protein
2634	 34.46	0	2837888..2839396	-	502	148269081	-	SaurJH9_2672	-	hypothetical protein
2635	 34.13	0	2839414..2841804	-	796	148269082	-	SaurJH9_2673	-	preprotein translocase subunit SecA
2636	 32.60	0	2841794..2842753	-	319	148269083	-	SaurJH9_2674	-	hypothetical protein
2637	 36.01	0	2842731..2844299	-	522	148269084	-	SaurJH9_2675	-	hypothetical protein
2638	 34.04	0	2844289..2845842	-	517	148269085	-	SaurJH9_2676	-	hypothetical protein
2639	 28.63	-1	2845853..2847064	-	403	148269086	secY	SaurJH9_2677	-	preprotein translocase subunit SecY
2640	 38.51	+1	2847194..2854009	-	2271	148269087	-	SaurJH9_2678	-	cell wall anchor domain-containing protein
2641	 38.10	+1	2854553..2855245	-	230	148269088	-	SaurJH9_2679	-	hypothetical protein
2642	 30.54	0	2855511..2855939	+	142	148269089	-	SaurJH9_2680	-	hypothetical protein
2643	 32.68	0	2855923..2856228	+	101	148269090	-	SaurJH9_2681	-	hypothetical protein
2644	 34.72	0	2856382..2856741	+	119	148269091	-	SaurJH9_2682	-	hypothetical protein
2645	 34.97	0	2856826..2857437	-	203	148269092	-	SaurJH9_2683	-	hypothetical protein
2646	 35.22	0	2857516..2857992	-	158	148269093	-	SaurJH9_2684	-	methionine sulfoxide reductase A
2647	 32.93	0	2857995..2858495	-	166	148269094	-	SaurJH9_2685	-	GCN5-related N-acetyltransferase
2648	 32.16	0	2858730..2859497	-	255	148269095	-	SaurJH9_2686	-	protein-tyrosine-phosphatase
2649	 35.79	0	2859494..2860186	-	230	148269096	-	SaurJH9_2687	-	exopolysaccharide tyrosine-protein kinase
2650	 28.96	-1	2860203..2860865	-	220	148269097	-	SaurJH9_2688	-	lipopolysaccharide biosynthesis protein
2651	 27.63	-1	2861714..2862274	-	186	148269098	-	SaurJH9_2689	-	TetR family transcriptional regulator
2652	 34.75	0	2862477..2863676	+	399	148269099	-	SaurJH9_2690	-	N-glycosyltransferase PgaC
2653	 31.70	0	2863640..2863945	+	101	148269100	-	SaurJH9_2691	-	hypothetical protein
2654	 29.21	-1	2863942..2864814	+	290	148269101	-	SaurJH9_2692	-	intercellular adhesion protein B
2655	 27.16	-1	2864801..2865853	+	350	148269102	-	SaurJH9_2693	-	polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation-like protein
2656	 34.36	0	2866186..2868231	-	681	148269103	-	SaurJH9_2694	-	triacylglycerol lipase
2657	 27.70	-1	2868949..2869161	-	70	148269104	-	SaurJH9_2695	-	hypothetical protein
2658	 34.12	0	2869321..2869953	-	210	148269105	-	SaurJH9_2696	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
2659	 36.89	+1	2869950..2870708	-	252	148269106	-	SaurJH9_2697	-	imidazoleglycerol phosphate synthase, cyclase subunit
2660	 38.87	+1	2870705..2871409	-	234	148269107	-	SaurJH9_2698	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
2661	 36.79	+1	2871402..2871980	-	192	148269108	hisH	SaurJH9_2699	-	imidazole glycerol phosphate synthase subunit HisH
2662	 36.79	+1	2871977..2872555	-	192	148269109	-	SaurJH9_2700	-	imidazoleglycerol-phosphate dehydratase
2663	 34.71	0	2872524..2873537	-	337	148269110	-	SaurJH9_2701	-	aminotransferase, class I and II
2664	 36.05	0	2873553..2874803	-	416	148269111	-	SaurJH9_2702	-	histidinol dehydrogenase
2665	 33.66	0	2874796..2875410	-	204	148269112	hisG	SaurJH9_2703	-	ATP phosphoribosyltransferase catalytic subunit
2666	 35.20	0	2875428..2876285	-	285	148269113	hisZ	SaurJH9_2704	-	ATP phosphoribosyltransferase regulatory subunit
2667	 32.36	0	2876550..2877674	-	374	148269114	-	SaurJH9_2705	-	hypothetical protein
2668	 29.72	-1	2877792..2878289	-	165	148269115	-	SaurJH9_2706	-	hypothetical protein
2669	 29.74	-1	2878336..2879169	-	277	148269116	-	SaurJH9_2707	-	cobalt transport protein
2670	 33.45	0	2879166..2880878	-	570	148269117	-	SaurJH9_2708	-	ABC transporter related
2671	 32.25	0	2880931..2881485	-	184	148269118	-	SaurJH9_2709	-	hypothetical protein
2672	 34.86	0	2881514..2882362	-	282	148269119	-	SaurJH9_2710	-	hypothetical protein
2673	 33.33	0	2882741..2883256	+	171	148269120	-	SaurJH9_2711	-	hypothetical protein
2674	 35.69	0	2883407..2884381	-	324	148269121	-	SaurJH9_2712	-	SMP-30/gluconolaconase/LRE domain-containing protein
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.