IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2510	 34.54	0	2695774..2696766	+	330	148268957	-	SaurJH9_2547	-	D-lactate dehydrogenase
2511	 34.71	0	2697013..2697813	-	266	148268958	-	SaurJH9_2548	-	Cof-like hydrolase
2512	 24.84	-2	2698133..2698768	+	211	148268959	-	SaurJH9_2549	-	ABC transporter related
2513	 26.97	-1	2698783..2699505	+	240	148268960	-	SaurJH9_2550	-	hypothetical protein
2514	 32.53	0	2699667..2700287	-	206	148268961	-	SaurJH9_2551	-	sortase
2515	 35.16	0	2700481..2700972	+	163	148268962	-	SaurJH9_2552	-	GCN5-related N-acetyltransferase
2516	 31.58	0	2701116..2701286	-	56	148268963	-	SaurJH9_2553	-	hypothetical protein
2517	 41.11	+2	2701465..2702364	-	299	148268964	-	SaurJH9_2554	-	L-serine dehydratase, iron-sulfur-dependent, alpha subunit
2518	 32.45	0	2702378..2703058	-	226	148268965	-	SaurJH9_2555	-	L-serine dehydratase, iron-sulfur-dependent, beta subunit
2519	 37.36	+1	2703061..2704104	-	347	148268966	-	SaurJH9_2556	-	phosphotransferase system fructose-specific IIC component-like protein
2520	 34.89	0	2705013..2705975	+	320	148268967	-	SaurJH9_2557	-	hypothetical protein
2521	 37.15	+1	2706056..2707024	-	322	148268968	-	SaurJH9_2558	-	alpha/beta hydrolase domain-containing protein
2522	 36.13	0	2707145..2707501	-	118	148268969	-	SaurJH9_2559	-	hypothetical protein
2523	 36.74	+1	2707543..2707953	-	136	148268970	-	SaurJH9_2560	-	hypothetical protein
2524	 36.57	+1	2708333..2710399	-	688	148268971	-	SaurJH9_2561	-	PTS system, glucose-specific IIBC subunit
2525	 34.25	0	2710700..2712439	-	579	148268972	-	SaurJH9_2562	-	pyruvate oxidase
2526	 34.06	0	2712490..2713179	-	229	148268973	-	SaurJH9_2563	-	hypothetical protein
2527	 32.07	0	2713172..2713567	-	131	148268974	-	SaurJH9_2564	-	LrgA family protein
2528	 33.90	0	2713780..2714658	-	292	148268975	-	SaurJH9_2565	-	LysR family transcriptional regulator
2529	 35.16	0	2714825..2715043	+	72	148268976	-	SaurJH9_2566	-	hypothetical protein
2530	 34.95	0	2715433..2715864	+	143	148268977	-	SaurJH9_2567	-	CHAP domain-containing protein
2531	 39.28	+1	2716003..2717280	-	425	148268978	-	SaurJH9_2568	-	hydroxymethylglutaryl-CoA reductase, degradative
2532	 36.85	+1	2717535..2718701	+	388	148268979	-	SaurJH9_2569	-	hydroxymethylglutaryl-CoA synthase
2533	 39.66	+2	2718866..2719387	-	173	148268980	-	SaurJH9_2570	-	methylated-DNA--protein-cysteine methyltransferase
2534	 34.76	0	2719796..2721901	+	701	148268981	-	SaurJH9_2571	-	ATPase
2535	 34.69	0	2722153..2724147	-	664	148268982	-	SaurJH9_2572	-	ferrous iron transport protein B
2536	 30.70	0	2724159..2724386	-	75	148268983	-	SaurJH9_2573	-	FeoA family protein
2537	 33.98	0	2724602..2727091	-	829	148268984	-	SaurJH9_2574	-	MMPL domain-containing protein
2538	 30.60	0	2727236..2727784	+	182	148268985	-	SaurJH9_2575	-	TetR family transcriptional regulator
2539	 36.31	0	2728140..2729684	-	514	148268986	-	SaurJH9_2576	-	1-pyrroline-5-carboxylate dehydrogenase
2540	 36.00	0	2729874..2730473	-	199	148268987	-	SaurJH9_2577	-	hexapaptide repeat-containing transferase
2541	 29.69	-1	2730712..2730903	+	63	148268988	-	SaurJH9_2578	-	hypothetical protein
2542	 37.73	+1	2731143..2733551	+	802	148268989	-	SaurJH9_2579	-	copper-translocating P-type ATPase
2543	 35.75	0	2733962..2734168	+	68	148268990	-	SaurJH9_2580	-	copper ion binding protein
2544	 36.64	+1	2734259..2735257	-	332	148268991	-	SaurJH9_2581	-	D-lactate dehydrogenase
2545	 36.36	+1	2735280..2736434	-	384	148268992	-	SaurJH9_2582	-	aminotransferase, class I and II
2546	 35.32	0	2736862..2738370	-	502	148268993	-	SaurJH9_2583	-	squalene synthase
2547	 31.48	0	2738382..2739245	-	287	148268994	-	SaurJH9_2584	-	squalene/phytoene synthase
2548	 36.26	0	2739282..2740409	-	375	148268995	-	SaurJH9_2585	-	glycosyl transferase family protein
2549	 35.48	0	2740415..2741908	-	497	148268996	-	SaurJH9_2586	-	zeta-phytoene desaturase
2550	 29.12	-1	2741901..2742398	-	165	148268997	-	SaurJH9_2587	-	hypothetical protein
2551	 36.85	+1	2742564..2743331	-	255	148268998	-	SaurJH9_2588	-	CHAP domain-containing protein
2552	 33.44	0	2743692..2745503	-	603	148268999	-	SaurJH9_2589	-	acyltransferase 3
2553	 41.74	+2	2746779..2747480	-	233	148269000	-	SaurJH9_2591	-	transglycosylase domain-containing protein
2554	 36.27	0	2748088..2749143	-	351	148269001	-	SaurJH9_2592	-	hypothetical protein
2555	 24.02	-2	2749289..2749492	+	67	148269002	-	SaurJH9_2593	-	hypothetical protein
2556	 32.99	0	2749535..2750122	+	195	148269003	-	SaurJH9_2594	-	TetR family transcriptional regulator
2557	 35.33	0	2750320..2750820	+	166	148269004	-	SaurJH9_2595	-	hypothetical protein
2558	 32.90	0	2751040..2751270	+	76	148269005	-	SaurJH9_2596	-	hypothetical protein
2559	 34.39	0	2751572..2751949	-	125	148269006	-	SaurJH9_2597	-	glyoxalase/bleomycin resistance protein/dioxygenase
2560	 32.73	0	2751966..2752787	-	273	148269007	-	SaurJH9_2598	-	hypothetical protein
2561	 33.67	0	2752807..2753106	-	99	148269008	-	SaurJH9_2599	-	hypothetical protein
2562	 31.36	0	2753237..2753794	+	185	148269009	-	SaurJH9_2600	-	TetR family transcriptional regulator
2563	 38.30	+1	2753787..2754491	+	234	148269010	-	SaurJH9_2601	-	short-chain dehydrogenase/reductase SDR
2564	 34.22	0	2754589..2755599	+	336	148269011	-	SaurJH9_2602	-	amidohydrolase 2
2565	 37.67	+1	2755619..2756449	+	276	148269012	-	SaurJH9_2603	-	alpha/beta hydrolase fold
2566	 35.35	0	2756596..2757486	-	296	148269013	-	SaurJH9_2604	-	cobalamin synthesis protein, P47K
2567	 34.30	0	2757583..2758923	-	446	148269014	-	SaurJH9_2605	-	nucleoside recognition domain-containing protein
2568	 35.95	0	2758917..2760023	-	368	148269015	-	SaurJH9_2606	-	hypothetical protein
2569	 27.27	-1	2760356..2760652	-	98	148269016	-	SaurJH9_2607	-	hypothetical protein
2570	 37.40	+1	2760640..2761008	-	122	148269017	-	SaurJH9_2608	-	hypothetical protein
2571	 31.52	0	2761023..2761298	-	91	148269018	-	SaurJH9_2609	-	hypothetical protein
2572	 37.02	+1	2761642..2762508	-	288	148269019	-	SaurJH9_2610	-	hypothetical protein
2573	 35.68	0	2762726..2763790	+	354	148269020	-	SaurJH9_2611	-	dihydroorotate dehydrogenase 2
2574	 30.07	0	2763945..2764220	+	91	148269021	-	SaurJH9_2612	-	hypothetical protein
2575	 33.61	0	2764406..2765128	-	240	148269022	-	SaurJH9_2613	-	hypothetical protein
2576	 36.22	0	2765482..2765931	+	149	148269023	-	SaurJH9_2614	-	hypothetical protein
2577	 30.27	0	2766012..2766599	-	195	148269024	-	SaurJH9_2615	-	TetR family transcriptional regulator
2578	 36.78	+1	2766742..2768424	+	560	148269025	-	SaurJH9_2616	-	X-Pro dipeptidyl-peptidase domain-containing protein
2579	 31.63	0	2768522..2769166	-	214	148269026	-	SaurJH9_2617	-	cell wall anchor domain-containing protein
2580	 29.25	-1	2769173..2770249	-	358	148269027	-	SaurJH9_2618	-	peptidase S1 and S6, chymotrypsin/Hap
2581	 32.81	0	2770592..2770975	-	127	148269028	-	SaurJH9_2619	-	aspartate alpha-decarboxylase
2582	 36.27	0	2770977..2771828	-	283	148269029	panC	SaurJH9_2620	-	pantoate--beta-alanine ligase
2583	 36.26	0	2771821..2772639	-	272	148269030	panB	SaurJH9_2621	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2584	 37.40	+1	2772712..2773572	+	286	148269031	-	SaurJH9_2622	-	2-dehydropantoate 2-reductase
2585	 36.31	0	2773658..2774362	-	234	148269032	-	SaurJH9_2623	-	acetolactate decarboxylase
2586	 35.42	0	2774640..2775599	-	319	148269033	-	SaurJH9_2624	-	L-lactate dehydrogenase
2587	 37.27	+1	2776285..2777733	+	482	148269034	-	SaurJH9_2625	-	amino acid permease-associated region
2588	 38.12	+1	2777814..2779151	-	445	148269035	-	SaurJH9_2626	-	4-aminobutyrate aminotransferase
2589	 28.17	-1	2779400..2779825	+	141	148269036	-	SaurJH9_2627	-	hypothetical protein
2590	 33.89	0	2779948..2780838	+	296	148269037	-	SaurJH9_2628	-	fructose-1,6-bisphosphate aldolase
2591	 36.34	0	2781032..2782528	-	498	148269038	-	SaurJH9_2629	-	malate:quinone oxidoreductase
2592	 26.67	-1	2782824..2783153	+	109	148269039	-	SaurJH9_2630	-	hypothetical protein
2593	 36.36	0	2783213..2784832	-	539	148269040	-	SaurJH9_2631	-	AMP-dependent synthetase and ligase
2594	 30.42	0	2785005..2785484	-	159	148269041	-	SaurJH9_2632	-	hypothetical protein
2595	 27.70	-1	2785728..2785940	-	70	148269042	-	SaurJH9_2633	-	hypothetical protein
2596	 38.77	+1	2786218..2787927	-	569	148269043	-	SaurJH9_2634	-	choline dehydrogenase
2597	 36.82	+1	2788188..2789678	-	496	148269044	-	SaurJH9_2635	-	betaine aldehyde dehydrogenase
2598	 35.11	0	2789931..2790494	+	187	148269045	-	SaurJH9_2636	-	hypothetical protein
2599	 35.49	0	2790665..2792287	-	540	148269046	-	SaurJH9_2637	-	choline transporter
2600	 22.22	-2	2792419..2792580	+	53	148269047	-	SaurJH9_2638	-	hypothetical protein
2601	 32.22	0	2792806..2793342	-	178	148269048	-	SaurJH9_2639	-	anaerobic ribonucleoside-triphosphate reductase activating protein
2602	 34.58	0	2793339..2795189	-	616	148269049	-	SaurJH9_2640	-	anaerobic ribonucleoside triphosphate reductase
2603	 36.32	0	2795379..2796749	-	456	148269050	-	SaurJH9_2641	-	CitMHS family citrate/H+ symporter
2604	 37.29	+1	2797242..2797847	-	201	148269051	-	SaurJH9_2642	-	precorrin-2 dehydrogenase
2605	 34.87	0	2797910..2799799	-	629	148269052	-	SaurJH9_2643	-	sulfite reductase (NADPH) flavoprotein, alpha chain
2606	 31.12	0	2800184..2800681	-	165	148269053	-	SaurJH9_2644	-	peroxiredoxin
2607	 31.48	0	2802105..2804105	-	666	148269054	-	SaurJH9_2645	-	hypothetical protein
2608	 34.92	0	2804102..2804857	-	251	148269055	-	SaurJH9_2646	-	ABC transporter related
2609	 29.95	0	2804965..2805852	-	295	148269056	-	SaurJH9_2647	-	integral membrane sensor signal transduction histidine kinase
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.