IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2444	 34.39	0	2621605..2622267	-	220	148268891	-	SaurJH9_2481	-	ABC transporter related
2445	 37.51	+1	2622515..2623591	-	358	148268892	-	SaurJH9_2482	-	cellulase
2446	 28.46	-1	2623946..2624212	-	88	148268893	-	SaurJH9_2483	-	addiction module antitoxin
2447	 28.29	-1	2624212..2624469	-	85	148268894	-	SaurJH9_2484	-	prevent-host-death family protein
2448	 28.07	-1	2624828..2625283	+	151	148268895	-	SaurJH9_2485	-	hypothetical protein
2449	 32.32	0	2625334..2625432	-	32	148268896	-	SaurJH9_2486	-	hypothetical protein
2450	 35.80	0	2625451..2627028	-	525	148268897	-	SaurJH9_2487	-	ferredoxin-dependent glutamate synthase
2451	 30.93	0	2627223..2627972	+	249	148268898	-	SaurJH9_2488	-	hypothetical protein
2452	 37.02	+1	2628334..2629527	-	397	148268899	-	SaurJH9_2489	-	major facilitator transporter
2453	 35.47	0	2629539..2630288	-	249	148268900	-	SaurJH9_2490	-	ABC transporter related
2454	 35.54	0	2630281..2631096	-	271	148268901	-	SaurJH9_2491	-	ABC transporter related
2455	 35.86	0	2631093..2631962	-	289	148268902	-	SaurJH9_2492	-	binding-protein-dependent transport systems inner membrane component
2456	 34.08	0	2631959..2632894	-	311	148268903	-	SaurJH9_2493	-	binding-protein-dependent transport systems inner membrane component
2457	 34.46	0	2632907..2634505	-	532	148268904	-	SaurJH9_2494	-	nickel ABC transporter, periplasmic nickel-binding protein
2458	 36.48	+1	2634648..2635949	-	433	148268905	-	SaurJH9_2495	-	hypothetical protein
2459	 33.82	0	2635942..2636760	-	272	148268906	-	SaurJH9_2496	-	hypothetical protein
2460	 35.40	0	2636771..2637592	-	273	148268907	-	SaurJH9_2497	-	hypothetical protein
2461	 34.90	0	2638282..2639049	-	255	148268908	-	SaurJH9_2498	-	beta-lactamase domain-containing protein
2462	 40.29	+2	2639149..2639967	-	272	148268909	-	SaurJH9_2499	-	short chain dehydrogenase
2463	 36.00	0	2640202..2641740	+	512	148268910	-	SaurJH9_2500	-	AbgT putative transporter
2464	 28.13	-1	2641853..2642275	-	140	148268911	-	SaurJH9_2501	-	alkylhydroperoxidase
2465	 32.14	0	2642727..2643146	-	139	148268912	-	SaurJH9_2502	-	hypothetical protein
2466	 26.52	-1	2643173..2643583	-	136	148268913	-	SaurJH9_2503	-	hypothetical protein
2467	 28.84	-1	2643850..2644272	-	140	148268914	-	SaurJH9_2504	-	hypothetical protein
2468	 37.07	+1	2644522..2645217	-	231	148268915	-	SaurJH9_2505	-	short-chain dehydrogenase/reductase SDR
2469	 32.98	0	2645506..2645787	+	93	148268916	-	SaurJH9_2506	-	hypothetical protein
2470	 35.94	0	2646047..2646238	-	63	148268917	-	SaurJH9_2507	-	hypothetical protein
2471	 31.08	0	2646799..2647596	-	265	148268918	-	SaurJH9_2508	-	putative lipoprotein
2472	 32.29	0	2648129..2648416	-	95	148268919	-	SaurJH9_2509	-	hypothetical protein
2473	 28.75	-1	2648419..2648745	-	108	148268920	-	SaurJH9_2510	-	hypothetical protein
2474	 33.41	0	2648745..2650070	-	441	148268921	-	SaurJH9_2511	-	hypothetical protein
2475	 30.58	0	2650057..2650854	-	265	148268922	-	SaurJH9_2512	-	putative lipoprotein
2476	 29.47	-1	2651095..2651871	-	258	148268923	-	SaurJH9_2513	-	putative lipoprotein
2477	 30.37	0	2651980..2652756	-	258	148268924	-	SaurJH9_2514	-	putative lipoprotein
2478	 27.78	-1	2653060..2655921	-	953	148268925	-	SaurJH9_2515	-	type III restriction enzyme, res subunit
2479	 31.30	0	2655923..2656315	-	130	148268926	-	SaurJH9_2516	-	NUDIX hydrolase
2480	 33.33	0	2656420..2658255	+	611	148268927	-	SaurJH9_2517	-	phosphoglucomutase/phosphomannomutase alpha/beta/subunit
2481	 31.46	0	2658539..2658805	+	88	148268928	-	SaurJH9_2518	-	hypothetical protein
2482	 27.83	-1	2658949..2659257	+	102	148268929	-	SaurJH9_2519	-	hypothetical protein
2483	 30.73	0	2659695..2660771	-	358	148268930	-	SaurJH9_2520	-	major facilitator transporter
2484	 35.83	0	2661155..2664118	-	987	148268931	-	SaurJH9_2521	-	cell wall anchor domain-containing protein
2485	 22.69	-2	2664423..2664779	-	118	148268932	-	SaurJH9_2522	-	SarA family transcriptional regulator
2486	 24.87	-2	2665103..2665846	+	247	148268933	-	SaurJH9_2523	-	SarA family transcriptional regulator
2487	 36.33	0	2666057..2666923	-	288	148268934	-	SaurJH9_2524	-	UTP-glucose-1-phosphate uridylyltransferase
2488	 36.38	+1	2667104..2669989	-	961	148268935	-	SaurJH9_2525	-	cell wall anchor domain-containing protein
2489	 37.63	+1	2670670..2673786	-	1038	148268936	-	SaurJH9_2526	-	cell wall anchor domain-containing protein
2490	 24.38	-2	2673921..2674121	-	66	148268937	-	SaurJH9_2527	-	hypothetical protein
2491	 36.20	0	2674255..2675613	-	452	148268938	-	SaurJH9_2528	-	gluconate transporter
2492	 37.64	+1	2675730..2677283	-	517	148268939	-	SaurJH9_2529	-	gluconate kinase
2493	 35.54	0	2677307..2677987	-	226	148268940	-	SaurJH9_2530	-	GntR family transcriptional regulator
2494	 34.77	0	2678140..2678904	-	254	148268941	-	SaurJH9_2531	-	MerR family transcriptional regulator
2495	 32.32	0	2679069..2679761	-	230	148268942	-	SaurJH9_2532	-	RelA/SpoT domain-containing protein
2496	 36.21	0	2679992..2680408	-	138	148268943	-	SaurJH9_2533	-	hypothetical protein
2497	 32.52	0	2680547..2682502	-	651	148268944	-	SaurJH9_2534	-	protein of unknown function DUF893, YccS/YhfK
2498	 35.99	0	2682847..2684124	-	425	148268945	-	SaurJH9_2535	-	major facilitator transporter
2499	 32.84	0	2684671..2685282	+	203	148268946	-	SaurJH9_2536	-	SNARE associated Golgi protein
2500	 31.32	0	2685800..2686495	+	231	148268947	-	SaurJH9_2537	-	ABC transporter related
2501	 26.72	-1	2686497..2687267	+	256	148268948	-	SaurJH9_2538	-	hypothetical protein
2502	 33.38	0	2687640..2689604	+	654	148268949	-	SaurJH9_2539	-	fructose-1,6-bisphosphatase
2503	 35.74	0	2689946..2691025	+	359	148268950	-	SaurJH9_2540	-	hypothetical protein
2504	 36.87	+1	2691130..2691723	-	197	148268951	-	SaurJH9_2541	-	phospholipase/carboxylesterase
2505	 35.42	0	2691754..2692713	-	319	148268952	-	SaurJH9_2542	-	glyoxalase/bleomycin resistance protein/dioxygenase
2506	 35.63	0	2692791..2693225	-	144	148268953	-	SaurJH9_2543	-	transcriptional regulator, TrmB
2507	 32.28	0	2693451..2693735	+	94	148268954	-	SaurJH9_2544	-	acetyltransferase-like protein
2508	 37.55	+1	2693906..2694712	+	268	148268955	-	SaurJH9_2545	-	glyoxalase/bleomycin resistance protein/dioxygenase
2509	 36.90	+1	2694833..2695504	-	223	148268956	-	SaurJH9_2546	-	nitroreductase
2510	 34.54	0	2695774..2696766	+	330	148268957	-	SaurJH9_2547	-	D-lactate dehydrogenase
2511	 34.71	0	2697013..2697813	-	266	148268958	-	SaurJH9_2548	-	Cof-like hydrolase
2512	 24.84	-2	2698133..2698768	+	211	148268959	-	SaurJH9_2549	-	ABC transporter related
2513	 26.97	-1	2698783..2699505	+	240	148268960	-	SaurJH9_2550	-	hypothetical protein
2514	 32.53	0	2699667..2700287	-	206	148268961	-	SaurJH9_2551	-	sortase
2515	 35.16	0	2700481..2700972	+	163	148268962	-	SaurJH9_2552	-	GCN5-related N-acetyltransferase
2516	 31.58	0	2701116..2701286	-	56	148268963	-	SaurJH9_2553	-	hypothetical protein
2517	 41.11	+2	2701465..2702364	-	299	148268964	-	SaurJH9_2554	-	L-serine dehydratase, iron-sulfur-dependent, alpha subunit
2518	 32.45	0	2702378..2703058	-	226	148268965	-	SaurJH9_2555	-	L-serine dehydratase, iron-sulfur-dependent, beta subunit
2519	 37.36	+1	2703061..2704104	-	347	148268966	-	SaurJH9_2556	-	phosphotransferase system fructose-specific IIC component-like protein
2520	 34.89	0	2705013..2705975	+	320	148268967	-	SaurJH9_2557	-	hypothetical protein
2521	 37.15	+1	2706056..2707024	-	322	148268968	-	SaurJH9_2558	-	alpha/beta hydrolase domain-containing protein
2522	 36.13	0	2707145..2707501	-	118	148268969	-	SaurJH9_2559	-	hypothetical protein
2523	 36.74	+1	2707543..2707953	-	136	148268970	-	SaurJH9_2560	-	hypothetical protein
2524	 36.57	+1	2708333..2710399	-	688	148268971	-	SaurJH9_2561	-	PTS system, glucose-specific IIBC subunit
2525	 34.25	0	2710700..2712439	-	579	148268972	-	SaurJH9_2562	-	pyruvate oxidase
2526	 34.06	0	2712490..2713179	-	229	148268973	-	SaurJH9_2563	-	hypothetical protein
2527	 32.07	0	2713172..2713567	-	131	148268974	-	SaurJH9_2564	-	LrgA family protein
2528	 33.90	0	2713780..2714658	-	292	148268975	-	SaurJH9_2565	-	LysR family transcriptional regulator
2529	 35.16	0	2714825..2715043	+	72	148268976	-	SaurJH9_2566	-	hypothetical protein
2530	 34.95	0	2715433..2715864	+	143	148268977	-	SaurJH9_2567	-	CHAP domain-containing protein
2531	 39.28	+1	2716003..2717280	-	425	148268978	-	SaurJH9_2568	-	hydroxymethylglutaryl-CoA reductase, degradative
2532	 36.85	+1	2717535..2718701	+	388	148268979	-	SaurJH9_2569	-	hydroxymethylglutaryl-CoA synthase
2533	 39.66	+2	2718866..2719387	-	173	148268980	-	SaurJH9_2570	-	methylated-DNA--protein-cysteine methyltransferase
2534	 34.76	0	2719796..2721901	+	701	148268981	-	SaurJH9_2571	-	ATPase
2535	 34.69	0	2722153..2724147	-	664	148268982	-	SaurJH9_2572	-	ferrous iron transport protein B
2536	 30.70	0	2724159..2724386	-	75	148268983	-	SaurJH9_2573	-	FeoA family protein
2537	 33.98	0	2724602..2727091	-	829	148268984	-	SaurJH9_2574	-	MMPL domain-containing protein
2538	 30.60	0	2727236..2727784	+	182	148268985	-	SaurJH9_2575	-	TetR family transcriptional regulator
2539	 36.31	0	2728140..2729684	-	514	148268986	-	SaurJH9_2576	-	1-pyrroline-5-carboxylate dehydrogenase
2540	 36.00	0	2729874..2730473	-	199	148268987	-	SaurJH9_2577	-	hexapaptide repeat-containing transferase
2541	 29.69	-1	2730712..2730903	+	63	148268988	-	SaurJH9_2578	-	hypothetical protein
2542	 37.73	+1	2731143..2733551	+	802	148268989	-	SaurJH9_2579	-	copper-translocating P-type ATPase
2543	 35.75	0	2733962..2734168	+	68	148268990	-	SaurJH9_2580	-	copper ion binding protein
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.