IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2375	 27.60	-1	2543584..2543949	-	121	148268822	-	SaurJH9_2409	-	hypothetical protein
2376	 28.86	-1	2544346..2544792	+	148	148268823	-	SaurJH9_2410	-	MarR family transcriptional regulator
2377	 29.68	-1	2544999..2545436	+	145	148268824	-	SaurJH9_2411	-	heat shock protein Hsp20
2378	 34.44	0	2545543..2546712	-	389	148268825	-	SaurJH9_2412	-	major facilitator transporter
2379	 31.37	0	2547081..2547995	+	304	148268826	-	SaurJH9_2413	-	Zn-dependent protease-like protein
2380	 27.94	-1	2547974..2548714	+	246	148268827	-	SaurJH9_2414	-	MerR family transcriptional regulator
2381	 33.94	0	2548972..2549625	-	217	148268828	-	SaurJH9_2415	-	two component LuxR family transcriptional regulator
2382	 33.62	0	2549648..2550682	-	344	148268829	-	SaurJH9_2416	-	histidine kinase
2383	 33.11	0	2550706..2551158	-	150	148268830	-	SaurJH9_2417	-	hypothetical protein
2384	 32.45	0	2551178..2551855	-	225	148268831	-	SaurJH9_2418	-	respiratory nitrate reductase, gamma subunit
2385	 30.03	0	2551848..2552423	-	191	148268832	-	SaurJH9_2419	-	nitrate reductase molybdenum cofactor assembly chaperone
2386	 37.88	+1	2552416..2553975	-	519	148268833	-	SaurJH9_2420	-	nitrate reductase, beta subunit
2387	 37.83	+1	2557913..2558890	-	325	148268834	-	SaurJH9_2422	-	uroporphyrin-III C-methyltransferase
2388	 35.24	0	2558881..2559195	-	104	148268835	-	SaurJH9_2423	-	nitrite reductase (NAD(P)H), small subunit
2389	 36.41	+1	2559199..2561604	-	801	148268836	-	SaurJH9_2424	-	nitrite reductase (NAD(P)H), large subunit
2390	 35.52	0	2561670..2562401	-	243	148268837	-	SaurJH9_2425	-	cobalamin (vitamin B12) biosynthesis CbiX protein
2391	 36.69	+1	2562631..2563167	-	178	148268838	-	SaurJH9_2426	-	GCN5-related N-acetyltransferase
2392	 33.82	0	2563401..2564225	-	274	148268839	-	SaurJH9_2427	-	formate/nitrite transporter
2393	 24.04	-2	2564442..2564624	-	60	148268840	-	SaurJH9_2428	-	hypothetical protein
2394	 33.97	0	2564708..2565175	-	155	148268841	-	SaurJH9_2429	-	activator of Hsp90 ATPase 1 family protein
2395	 31.91	0	2565361..2566908	-	515	148268842	-	SaurJH9_2430	-	ribulose-phosphate 3-epimerase
2396	 31.75	0	2567470..2567721	-	83	148268843	-	SaurJH9_2433	-	prevent-host-death family protein
2397	 29.67	-1	2567994..2568593	-	199	148268844	-	SaurJH9_2434	-	protein-disulfide isomerase-like protein
2398	 30.30	0	2568612..2568974	-	120	148268845	-	SaurJH9_2435	-	hypothetical protein
2399	 33.33	0	2569229..2570479	+	416	148268846	-	SaurJH9_2436	-	methicillin resistance protein
2400	 34.56	0	2570576..2571307	-	243	148268847	-	SaurJH9_2437	-	ABC transporter related
2401	 33.61	0	2571304..2572023	-	239	148268848	-	SaurJH9_2438	-	polar amino acid ABC transporter, inner membrane subunit
2402	 31.54	0	2572004..2572783	-	259	148268849	-	SaurJH9_2439	-	extracellular solute-binding protein
2403	 34.10	0	2572904..2574343	-	479	148268850	-	SaurJH9_2440	-	EmrB/QacA family drug resistance transporter
2404	 30.48	0	2574517..2574621	+	34	148268851	-	SaurJH9_2441	-	hypothetical protein
2405	 33.48	0	2574775..2575461	-	228	148268852	-	SaurJH9_2442	-	phosphoglycerate mutase 1 family protein
2406	 33.45	0	2575788..2576654	-	288	148268853	-	SaurJH9_2443	-	cation diffusion facilitator family transporter
2407	 32.49	0	2577474..2578784	+	436	148268854	-	SaurJH9_2444	-	Ig-binding B domain-containing protein
2408	 32.09	0	2579329..2580294	+	321	148268855	-	SaurJH9_2445	-	beta-channel forming cytolysin
2409	 33.23	0	2580861..2581808	+	315	148268856	-	SaurJH9_2446	-	beta-channel forming cytolysin
2410	 32.00	0	2581810..2582787	+	325	148268857	-	SaurJH9_2447	-	beta-channel forming cytolysin
2411	 29.70	-1	2582839..2583306	-	155	148268858	-	SaurJH9_2448	-	hypothetical protein
2412	 33.04	0	2583317..2584009	-	230	148268859	-	SaurJH9_2449	-	6-carboxyhexanoate--CoA ligase
2413	 30.47	0	2584020..2585135	-	371	148268860	-	SaurJH9_2450	-	8-amino-7-oxononanoate synthase
2414	 33.43	0	2585113..2586120	-	335	148268861	-	SaurJH9_2451	-	biotin synthase
2415	 33.63	0	2586122..2587480	-	452	148268862	-	SaurJH9_2452	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
2416	 31.88	0	2587458..2588144	-	228	148268863	-	SaurJH9_2453	-	dethiobiotin synthase
2417	 29.82	0	2588597..2590330	-	577	148268864	-	SaurJH9_2454	-	ABC transporter related
2418	 31.41	0	2590355..2592118	-	587	148268865	-	SaurJH9_2455	-	ABC transporter related
2419	 27.93	-1	2592684..2592794	-	36	148268866	-	SaurJH9_2456	-	hypothetical protein
2420	 29.20	-1	2593062..2593448	-	128	148268867	-	SaurJH9_2457	-	hypothetical protein
2421	 38.50	+1	2593716..2594858	+	380	148268868	-	SaurJH9_2458	-	glycerate kinase
2422	 31.52	0	2594918..2595577	+	219	148268869	-	SaurJH9_2459	-	hypothetical protein
2423	 35.07	0	2595759..2596970	+	403	148268870	-	SaurJH9_2460	-	Bcr/CflA subfamily drug resistance transporter
2424	 36.29	0	2597093..2597566	-	157	148268871	-	SaurJH9_2461	-	hypothetical protein
2425	 35.62	0	2597679..2598335	+	218	148268872	-	SaurJH9_2462	-	hypothetical protein
2426	 34.18	0	2598398..2599225	-	275	148268873	-	SaurJH9_2463	-	hypothetical protein
2427	 35.11	0	2599490..2600899	+	469	148268874	-	SaurJH9_2464	-	amino acid permease-associated region
2428	 32.37	0	2601037..2603115	+	692	148268875	-	SaurJH9_2465	-	sodium/hydrogen exchanger
2429	 34.04	0	2603256..2605085	-	609	148268876	-	SaurJH9_2466	-	hypothetical protein
2430	 22.86	-2	2605179..2605283	-	34	148268877	-	SaurJH9_2467	-	hypothetical protein
2431	 31.60	0	2605317..2606813	+	498	148268878	-	SaurJH9_2468	-	beta-lactamase
2432	 35.68	0	2606905..2607756	-	283	148268879	-	SaurJH9_2469	-	NAD-dependent epimerase/dehydratase
2433	 35.58	0	2608078..2609013	-	311	148268880	-	SaurJH9_2470	-	2-dehydropantoate 2-reductase
2434	 34.40	0	2609239..2610639	-	466	148268881	-	SaurJH9_2471	-	major facilitator transporter
2435	 35.49	0	2610933..2611628	-	231	148268882	-	SaurJH9_2472	-	binding-protein-dependent transport systems inner membrane component
2436	 35.35	0	2611628..2612569	-	313	148268883	-	SaurJH9_2473	-	substrate-binding region of ABC-type glycine betaine transport system
2437	 35.85	0	2612586..2613221	-	211	148268884	-	SaurJH9_2474	-	binding-protein-dependent transport systems inner membrane component
2438	 35.53	0	2613218..2614444	-	408	148268885	-	SaurJH9_2475	-	glycine betaine/L-proline ABC transporter, ATPase subunit
2439	 32.17	0	2615114..2615713	-	199	148268886	-	SaurJH9_2476	-	hypothetical protein
2440	 36.14	0	2615893..2617530	+	545	148268887	-	SaurJH9_2477	-	amino acid permease-associated region
2441	 34.52	0	2617839..2619191	+	450	148268888	-	SaurJH9_2478	-	carboxylesterase, type B
2442	 35.27	0	2619253..2620440	-	395	148268889	-	SaurJH9_2479	-	major facilitator transporter
2443	 35.39	0	2620836..2621612	-	258	148268890	-	SaurJH9_2480	-	hypothetical protein
2444	 34.39	0	2621605..2622267	-	220	148268891	-	SaurJH9_2481	-	ABC transporter related
2445	 37.51	+1	2622515..2623591	-	358	148268892	-	SaurJH9_2482	-	cellulase
2446	 28.46	-1	2623946..2624212	-	88	148268893	-	SaurJH9_2483	-	addiction module antitoxin
2447	 28.29	-1	2624212..2624469	-	85	148268894	-	SaurJH9_2484	-	prevent-host-death family protein
2448	 28.07	-1	2624828..2625283	+	151	148268895	-	SaurJH9_2485	-	hypothetical protein
2449	 32.32	0	2625334..2625432	-	32	148268896	-	SaurJH9_2486	-	hypothetical protein
2450	 35.80	0	2625451..2627028	-	525	148268897	-	SaurJH9_2487	-	ferredoxin-dependent glutamate synthase
2451	 30.93	0	2627223..2627972	+	249	148268898	-	SaurJH9_2488	-	hypothetical protein
2452	 37.02	+1	2628334..2629527	-	397	148268899	-	SaurJH9_2489	-	major facilitator transporter
2453	 35.47	0	2629539..2630288	-	249	148268900	-	SaurJH9_2490	-	ABC transporter related
2454	 35.54	0	2630281..2631096	-	271	148268901	-	SaurJH9_2491	-	ABC transporter related
2455	 35.86	0	2631093..2631962	-	289	148268902	-	SaurJH9_2492	-	binding-protein-dependent transport systems inner membrane component
2456	 34.08	0	2631959..2632894	-	311	148268903	-	SaurJH9_2493	-	binding-protein-dependent transport systems inner membrane component
2457	 34.46	0	2632907..2634505	-	532	148268904	-	SaurJH9_2494	-	nickel ABC transporter, periplasmic nickel-binding protein
2458	 36.48	+1	2634648..2635949	-	433	148268905	-	SaurJH9_2495	-	hypothetical protein
2459	 33.82	0	2635942..2636760	-	272	148268906	-	SaurJH9_2496	-	hypothetical protein
2460	 35.40	0	2636771..2637592	-	273	148268907	-	SaurJH9_2497	-	hypothetical protein
2461	 34.90	0	2638282..2639049	-	255	148268908	-	SaurJH9_2498	-	beta-lactamase domain-containing protein
2462	 40.29	+2	2639149..2639967	-	272	148268909	-	SaurJH9_2499	-	short chain dehydrogenase
2463	 36.00	0	2640202..2641740	+	512	148268910	-	SaurJH9_2500	-	AbgT putative transporter
2464	 28.13	-1	2641853..2642275	-	140	148268911	-	SaurJH9_2501	-	alkylhydroperoxidase
2465	 32.14	0	2642727..2643146	-	139	148268912	-	SaurJH9_2502	-	hypothetical protein
2466	 26.52	-1	2643173..2643583	-	136	148268913	-	SaurJH9_2503	-	hypothetical protein
2467	 28.84	-1	2643850..2644272	-	140	148268914	-	SaurJH9_2504	-	hypothetical protein
2468	 37.07	+1	2644522..2645217	-	231	148268915	-	SaurJH9_2505	-	short-chain dehydrogenase/reductase SDR
2469	 32.98	0	2645506..2645787	+	93	148268916	-	SaurJH9_2506	-	hypothetical protein
2470	 35.94	0	2646047..2646238	-	63	148268917	-	SaurJH9_2507	-	hypothetical protein
2471	 31.08	0	2646799..2647596	-	265	148268918	-	SaurJH9_2508	-	putative lipoprotein
2472	 32.29	0	2648129..2648416	-	95	148268919	-	SaurJH9_2509	-	hypothetical protein
2473	 28.75	-1	2648419..2648745	-	108	148268920	-	SaurJH9_2510	-	hypothetical protein
2474	 33.41	0	2648745..2650070	-	441	148268921	-	SaurJH9_2511	-	hypothetical protein
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.