IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2338	 32.16	0	2504828..2505337	+	169	148268785	-	SaurJH9_2372	-	hypothetical protein
2339	 31.19	0	2505334..2505753	+	139	148268786	-	SaurJH9_2373	-	hypothetical protein
2340	 32.79	0	2505861..2506781	-	306	148268787	-	SaurJH9_2374	-	alpha/beta hydrolase domain-containing protein
2341	 30.83	0	2506989..2507627	+	212	148268788	-	SaurJH9_2375	-	hypothetical protein
2342	 32.76	0	2507873..2509804	-	643	148268789	-	SaurJH9_2376	-	EmrB/QacA family drug resistance transporter
2343	 33.18	0	2509817..2510464	-	215	148268790	-	SaurJH9_2377	-	hypothetical protein
2344	 29.19	-1	2510585..2511139	+	184	148268791	-	SaurJH9_2378	-	TetR family transcriptional regulator
2345	 33.50	0	2511366..2512574	-	402	148268792	-	SaurJH9_2379	-	Bcr/CflA subfamily drug resistance transporter
2346	 31.67	0	2512843..2514225	-	460	148268793	-	SaurJH9_2380	-	membrane protein-like protein
2347	 28.73	-1	2514462..2514917	-	151	148268794	-	SaurJH9_2381	-	MarR family transcriptional regulator
2348	 30.96	0	2515112..2516080	+	322	148268795	-	SaurJH9_2382	-	hypothetical protein
2349	 35.44	0	2516311..2516976	-	221	148268796	-	SaurJH9_2383	-	ABC transporter related
2350	 30.40	0	2516976..2518031	-	351	148268797	-	SaurJH9_2384	-	hypothetical protein
2351	 35.26	0	2518167..2518841	+	224	148268798	-	SaurJH9_2385	-	two component transcriptional regulator
2352	 31.30	0	2518834..2520207	+	457	148268799	-	SaurJH9_2386	-	integral membrane sensor signal transduction histidine kinase
2353	 28.38	-1	2520370..2520813	+	147	148268800	-	SaurJH9_2387	-	hypothetical protein
2354	 30.92	0	2520810..2521265	+	151	148268801	-	SaurJH9_2388	-	hypothetical protein
2355	 36.11	0	2521331..2522809	-	492	148268802	-	SaurJH9_2389	-	malate:quinone oxidoreductase
2356	 32.21	0	2523190..2524788	-	532	148268803	-	SaurJH9_2390	-	L-lactate transport
2357	 32.74	0	2525090..2526778	+	562	148268804	-	SaurJH9_2391	-	hypothetical protein
2358	 30.08	0	2526932..2527546	-	204	148268805	-	SaurJH9_2392	-	hypothetical protein
2359	 31.78	0	2527860..2528375	-	171	148268806	-	SaurJH9_2393	-	GCN5-related N-acetyltransferase
2360	 36.58	+1	2528524..2529570	+	348	148268807	-	SaurJH9_2394	-	quinone oxidoreductase putative, YhdH/YhfP
2361	 37.31	+1	2529616..2530017	-	133	148268808	-	SaurJH9_2395	-	GCN5-related N-acetyltransferase
2362	 35.07	0	2530053..2531087	-	344	148268809	-	SaurJH9_2396	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2363	 21.37	-2	2531098..2531214	-	38	148268810	-	SaurJH9_2397	-	hypothetical protein
2364	 30.79	0	2531319..2531750	-	143	148268811	-	SaurJH9_2398	-	hypothetical protein
2365	 32.26	0	2531802..2531894	+	30	148268812	-	SaurJH9_2399	-	hypothetical protein
2366	 32.00	0	2531957..2533234	-	425	148268813	-	SaurJH9_2400	-	hypothetical protein
2367	 30.93	0	2533395..2534018	+	207	148268814	-	SaurJH9_2401	-	TetR family transcriptional regulator
2368	 29.95	0	2534064..2535008	+	314	148268815	-	SaurJH9_2402	-	Mg2+ transporter protein, CorA family protein
2369	 35.27	0	2535093..2536535	-	480	148268816	-	SaurJH9_2403	-	PTS system, sucrose-specific IIBC subunit
2370	 30.99	0	2536718..2537101	+	127	148268817	-	SaurJH9_2404	-	hypothetical protein
2371	 28.58	-1	2538589..2540694	+	701	148268818	-	SaurJH9_2405	-	helix-turn-helix domain-containing protein
2372	 31.91	0	2540765..2541187	+	140	148268819	-	SaurJH9_2406	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
2373	 27.73	-1	2541451..2541807	+	118	148268820	-	SaurJH9_2407	-	hypothetical protein
2374	 33.10	0	2542125..2543402	-	425	148268821	-	SaurJH9_2408	-	sodium:dicarboxylate symporter
2375	 27.60	-1	2543584..2543949	-	121	148268822	-	SaurJH9_2409	-	hypothetical protein
2376	 28.86	-1	2544346..2544792	+	148	148268823	-	SaurJH9_2410	-	MarR family transcriptional regulator
2377	 29.68	-1	2544999..2545436	+	145	148268824	-	SaurJH9_2411	-	heat shock protein Hsp20
2378	 34.44	0	2545543..2546712	-	389	148268825	-	SaurJH9_2412	-	major facilitator transporter
2379	 31.37	0	2547081..2547995	+	304	148268826	-	SaurJH9_2413	-	Zn-dependent protease-like protein
2380	 27.94	-1	2547974..2548714	+	246	148268827	-	SaurJH9_2414	-	MerR family transcriptional regulator
2381	 33.94	0	2548972..2549625	-	217	148268828	-	SaurJH9_2415	-	two component LuxR family transcriptional regulator
2382	 33.62	0	2549648..2550682	-	344	148268829	-	SaurJH9_2416	-	histidine kinase
2383	 33.11	0	2550706..2551158	-	150	148268830	-	SaurJH9_2417	-	hypothetical protein
2384	 32.45	0	2551178..2551855	-	225	148268831	-	SaurJH9_2418	-	respiratory nitrate reductase, gamma subunit
2385	 30.03	0	2551848..2552423	-	191	148268832	-	SaurJH9_2419	-	nitrate reductase molybdenum cofactor assembly chaperone
2386	 37.88	+1	2552416..2553975	-	519	148268833	-	SaurJH9_2420	-	nitrate reductase, beta subunit
2387	 37.83	+1	2557913..2558890	-	325	148268834	-	SaurJH9_2422	-	uroporphyrin-III C-methyltransferase
2388	 35.24	0	2558881..2559195	-	104	148268835	-	SaurJH9_2423	-	nitrite reductase (NAD(P)H), small subunit
2389	 36.41	+1	2559199..2561604	-	801	148268836	-	SaurJH9_2424	-	nitrite reductase (NAD(P)H), large subunit
2390	 35.52	0	2561670..2562401	-	243	148268837	-	SaurJH9_2425	-	cobalamin (vitamin B12) biosynthesis CbiX protein
2391	 36.69	+1	2562631..2563167	-	178	148268838	-	SaurJH9_2426	-	GCN5-related N-acetyltransferase
2392	 33.82	0	2563401..2564225	-	274	148268839	-	SaurJH9_2427	-	formate/nitrite transporter
2393	 24.04	-2	2564442..2564624	-	60	148268840	-	SaurJH9_2428	-	hypothetical protein
2394	 33.97	0	2564708..2565175	-	155	148268841	-	SaurJH9_2429	-	activator of Hsp90 ATPase 1 family protein
2395	 31.91	0	2565361..2566908	-	515	148268842	-	SaurJH9_2430	-	ribulose-phosphate 3-epimerase
2396	 31.75	0	2567470..2567721	-	83	148268843	-	SaurJH9_2433	-	prevent-host-death family protein
2397	 29.67	-1	2567994..2568593	-	199	148268844	-	SaurJH9_2434	-	protein-disulfide isomerase-like protein
2398	 30.30	0	2568612..2568974	-	120	148268845	-	SaurJH9_2435	-	hypothetical protein
2399	 33.33	0	2569229..2570479	+	416	148268846	-	SaurJH9_2436	-	methicillin resistance protein
2400	 34.56	0	2570576..2571307	-	243	148268847	-	SaurJH9_2437	-	ABC transporter related
2401	 33.61	0	2571304..2572023	-	239	148268848	-	SaurJH9_2438	-	polar amino acid ABC transporter, inner membrane subunit
2402	 31.54	0	2572004..2572783	-	259	148268849	-	SaurJH9_2439	-	extracellular solute-binding protein
2403	 34.10	0	2572904..2574343	-	479	148268850	-	SaurJH9_2440	-	EmrB/QacA family drug resistance transporter
2404	 30.48	0	2574517..2574621	+	34	148268851	-	SaurJH9_2441	-	hypothetical protein
2405	 33.48	0	2574775..2575461	-	228	148268852	-	SaurJH9_2442	-	phosphoglycerate mutase 1 family protein
2406	 33.45	0	2575788..2576654	-	288	148268853	-	SaurJH9_2443	-	cation diffusion facilitator family transporter
2407	 32.49	0	2577474..2578784	+	436	148268854	-	SaurJH9_2444	-	Ig-binding B domain-containing protein
2408	 32.09	0	2579329..2580294	+	321	148268855	-	SaurJH9_2445	-	beta-channel forming cytolysin
2409	 33.23	0	2580861..2581808	+	315	148268856	-	SaurJH9_2446	-	beta-channel forming cytolysin
2410	 32.00	0	2581810..2582787	+	325	148268857	-	SaurJH9_2447	-	beta-channel forming cytolysin
2411	 29.70	-1	2582839..2583306	-	155	148268858	-	SaurJH9_2448	-	hypothetical protein
2412	 33.04	0	2583317..2584009	-	230	148268859	-	SaurJH9_2449	-	6-carboxyhexanoate--CoA ligase
2413	 30.47	0	2584020..2585135	-	371	148268860	-	SaurJH9_2450	-	8-amino-7-oxononanoate synthase
2414	 33.43	0	2585113..2586120	-	335	148268861	-	SaurJH9_2451	-	biotin synthase
2415	 33.63	0	2586122..2587480	-	452	148268862	-	SaurJH9_2452	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
2416	 31.88	0	2587458..2588144	-	228	148268863	-	SaurJH9_2453	-	dethiobiotin synthase
2417	 29.82	0	2588597..2590330	-	577	148268864	-	SaurJH9_2454	-	ABC transporter related
2418	 31.41	0	2590355..2592118	-	587	148268865	-	SaurJH9_2455	-	ABC transporter related
2419	 27.93	-1	2592684..2592794	-	36	148268866	-	SaurJH9_2456	-	hypothetical protein
2420	 29.20	-1	2593062..2593448	-	128	148268867	-	SaurJH9_2457	-	hypothetical protein
2421	 38.50	+1	2593716..2594858	+	380	148268868	-	SaurJH9_2458	-	glycerate kinase
2422	 31.52	0	2594918..2595577	+	219	148268869	-	SaurJH9_2459	-	hypothetical protein
2423	 35.07	0	2595759..2596970	+	403	148268870	-	SaurJH9_2460	-	Bcr/CflA subfamily drug resistance transporter
2424	 36.29	0	2597093..2597566	-	157	148268871	-	SaurJH9_2461	-	hypothetical protein
2425	 35.62	0	2597679..2598335	+	218	148268872	-	SaurJH9_2462	-	hypothetical protein
2426	 34.18	0	2598398..2599225	-	275	148268873	-	SaurJH9_2463	-	hypothetical protein
2427	 35.11	0	2599490..2600899	+	469	148268874	-	SaurJH9_2464	-	amino acid permease-associated region
2428	 32.37	0	2601037..2603115	+	692	148268875	-	SaurJH9_2465	-	sodium/hydrogen exchanger
2429	 34.04	0	2603256..2605085	-	609	148268876	-	SaurJH9_2466	-	hypothetical protein
2430	 22.86	-2	2605179..2605283	-	34	148268877	-	SaurJH9_2467	-	hypothetical protein
2431	 31.60	0	2605317..2606813	+	498	148268878	-	SaurJH9_2468	-	beta-lactamase
2432	 35.68	0	2606905..2607756	-	283	148268879	-	SaurJH9_2469	-	NAD-dependent epimerase/dehydratase
2433	 35.58	0	2608078..2609013	-	311	148268880	-	SaurJH9_2470	-	2-dehydropantoate 2-reductase
2434	 34.40	0	2609239..2610639	-	466	148268881	-	SaurJH9_2471	-	major facilitator transporter
2435	 35.49	0	2610933..2611628	-	231	148268882	-	SaurJH9_2472	-	binding-protein-dependent transport systems inner membrane component
2436	 35.35	0	2611628..2612569	-	313	148268883	-	SaurJH9_2473	-	substrate-binding region of ABC-type glycine betaine transport system
2437	 35.85	0	2612586..2613221	-	211	148268884	-	SaurJH9_2474	-	binding-protein-dependent transport systems inner membrane component
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.