IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2295	 32.89	0	2459018..2460142	-	374	148268742	-	SaurJH9_2329	-	hypothetical protein
2296	 32.56	0	2460453..2461229	-	258	148268743	-	SaurJH9_2330	-	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
2297	 27.35	-1	2461251..2461484	-	77	148268744	-	SaurJH9_2331	-	hypothetical protein
2298	 31.22	0	2461712..2462185	-	157	148268745	-	SaurJH9_2332	-	hypothetical protein
2299	 35.43	0	2462185..2465139	-	984	148268746	-	SaurJH9_2333	-	formate dehydrogenase, alpha subunit
2300	 35.53	0	2465742..2466698	-	318	148268747	-	SaurJH9_2334	-	cell envelope-related transcriptional attenuator
2301	 32.21	0	2466822..2467619	-	265	148268748	-	SaurJH9_2335	-	inositol-phosphate phosphatase
2302	 31.02	0	2468004..2468696	+	230	148268749	-	SaurJH9_2336	-	helix-turn-helix, type 11 domain-containing protein
2303	 30.35	0	2468721..2469458	-	245	148268750	-	SaurJH9_2337	-	hypothetical protein
2304	 25.57	-2	2469528..2469836	+	102	148268751	-	SaurJH9_2338	-	hypothetical protein
2305	 29.32	-1	2470281..2471153	+	290	148268752	-	SaurJH9_2339	-	RpiR family transcriptional regulator
2306	 34.20	0	2471540..2472919	-	459	148268753	-	SaurJH9_2340	-	amino acid permease-associated region
2307	 33.61	0	2473199..2473555	+	118	148268754	-	SaurJH9_2341	-	hypothetical protein
2308	 29.03	-1	2473552..2473737	+	61	148268755	-	SaurJH9_2342	-	hypothetical protein
2309	 32.29	0	2473833..2474024	-	63	148268756	-	SaurJH9_2343	-	hypothetical protein
2310	 33.49	0	2474035..2474670	-	211	148268757	-	SaurJH9_2344	-	HAD family hydrolase
2311	 34.31	0	2474745..2475662	-	305	148268758	-	SaurJH9_2345	-	bile acid:sodium symporter
2312	 29.76	-1	2475930..2476460	+	176	148268759	-	SaurJH9_2346	-	hypothetical protein
2313	 35.83	0	2476526..2478130	-	534	148268760	-	SaurJH9_2347	-	PTS system, alpha-glucoside-specific IIBC subunit
2314	 30.91	0	2478263..2479582	-	439	148268761	-	SaurJH9_2348	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
2315	 29.93	0	2479980..2480744	+	254	148268762	-	SaurJH9_2349	-	RpiR family transcriptional regulator
2316	 33.53	0	2480802..2481308	-	168	148268763	-	SaurJH9_2350	-	hypothetical protein
2317	 35.07	0	2481475..2482854	-	459	148268764	-	SaurJH9_2351	-	Na+/H+ antiporter NhaC
2318	 27.89	-1	2483013..2483582	-	189	148268765	-	SaurJH9_2352	-	hypothetical protein
2319	 39.34	+1	2484069..2484950	-	293	148268766	-	SaurJH9_2353	-	short-chain dehydrogenase/reductase SDR
2320	 37.43	+1	2485061..2486182	-	373	148268767	-	SaurJH9_2354	-	amidohydrolase
2321	 36.08	0	2486458..2487696	-	412	148268768	-	SaurJH9_2355	-	imidazolonepropionase
2322	 39.47	+1	2487696..2489357	-	553	148268769	-	SaurJH9_2356	-	urocanate hydratase
2323	 31.64	0	2489517..2490401	+	294	148268770	-	SaurJH9_2357	-	LysR family transcriptional regulator
2324	 28.81	-1	2490583..2491002	+	139	148268771	-	SaurJH9_2358	-	fosfomycin resistance protein FosB
2325	 36.00	0	2491258..2492193	-	311	148268772	-	SaurJH9_2359	-	formimidoylglutamase
2326	 33.41	0	2492483..2493742	+	419	148268773	-	SaurJH9_2360	-	hypothetical protein
2327	 33.48	0	2493808..2494494	-	228	148268774	-	SaurJH9_2361	-	ribose 5-phosphate isomerase
2328	 33.94	0	2494668..2495321	+	217	148268775	-	SaurJH9_2362	-	MOSC domain-containing protein
2329	 31.37	0	2495557..2496576	-	339	148268776	-	SaurJH9_2363	-	aldose 1-epimerase
2330	 38.53	+1	2496606..2496932	-	108	148268777	-	SaurJH9_2364	-	hypothetical protein
2331	 31.31	0	2497150..2498382	-	410	148268778	-	SaurJH9_2365	-	hypothetical protein
2332	 34.44	0	2498375..2499274	-	299	148268779	-	SaurJH9_2366	-	ABC transporter related
2333	 31.08	0	2499506..2500126	-	206	148268780	-	SaurJH9_2367	-	hypothetical protein
2334	 37.93	+1	2500525..2501133	+	202	148268781	-	SaurJH9_2368	-	DNA-3-methyladenine glycosylase
2335	 33.09	0	2501466..2502674	+	402	148268782	-	SaurJH9_2369	-	sodium/glutamate symporter
2336	 37.81	+1	2502722..2503771	-	349	148268783	-	SaurJH9_2370	-	isopentenyl pyrophosphate isomerase
2337	 29.43	-1	2503802..2504749	-	315	148268784	-	SaurJH9_2371	-	Mg2+ transporter protein, CorA family protein
2338	 32.16	0	2504828..2505337	+	169	148268785	-	SaurJH9_2372	-	hypothetical protein
2339	 31.19	0	2505334..2505753	+	139	148268786	-	SaurJH9_2373	-	hypothetical protein
2340	 32.79	0	2505861..2506781	-	306	148268787	-	SaurJH9_2374	-	alpha/beta hydrolase domain-containing protein
2341	 30.83	0	2506989..2507627	+	212	148268788	-	SaurJH9_2375	-	hypothetical protein
2342	 32.76	0	2507873..2509804	-	643	148268789	-	SaurJH9_2376	-	EmrB/QacA family drug resistance transporter
2343	 33.18	0	2509817..2510464	-	215	148268790	-	SaurJH9_2377	-	hypothetical protein
2344	 29.19	-1	2510585..2511139	+	184	148268791	-	SaurJH9_2378	-	TetR family transcriptional regulator
2345	 33.50	0	2511366..2512574	-	402	148268792	-	SaurJH9_2379	-	Bcr/CflA subfamily drug resistance transporter
2346	 31.67	0	2512843..2514225	-	460	148268793	-	SaurJH9_2380	-	membrane protein-like protein
2347	 28.73	-1	2514462..2514917	-	151	148268794	-	SaurJH9_2381	-	MarR family transcriptional regulator
2348	 30.96	0	2515112..2516080	+	322	148268795	-	SaurJH9_2382	-	hypothetical protein
2349	 35.44	0	2516311..2516976	-	221	148268796	-	SaurJH9_2383	-	ABC transporter related
2350	 30.40	0	2516976..2518031	-	351	148268797	-	SaurJH9_2384	-	hypothetical protein
2351	 35.26	0	2518167..2518841	+	224	148268798	-	SaurJH9_2385	-	two component transcriptional regulator
2352	 31.30	0	2518834..2520207	+	457	148268799	-	SaurJH9_2386	-	integral membrane sensor signal transduction histidine kinase
2353	 28.38	-1	2520370..2520813	+	147	148268800	-	SaurJH9_2387	-	hypothetical protein
2354	 30.92	0	2520810..2521265	+	151	148268801	-	SaurJH9_2388	-	hypothetical protein
2355	 36.11	0	2521331..2522809	-	492	148268802	-	SaurJH9_2389	-	malate:quinone oxidoreductase
2356	 32.21	0	2523190..2524788	-	532	148268803	-	SaurJH9_2390	-	L-lactate transport
2357	 32.74	0	2525090..2526778	+	562	148268804	-	SaurJH9_2391	-	hypothetical protein
2358	 30.08	0	2526932..2527546	-	204	148268805	-	SaurJH9_2392	-	hypothetical protein
2359	 31.78	0	2527860..2528375	-	171	148268806	-	SaurJH9_2393	-	GCN5-related N-acetyltransferase
2360	 36.58	+1	2528524..2529570	+	348	148268807	-	SaurJH9_2394	-	quinone oxidoreductase putative, YhdH/YhfP
2361	 37.31	+1	2529616..2530017	-	133	148268808	-	SaurJH9_2395	-	GCN5-related N-acetyltransferase
2362	 35.07	0	2530053..2531087	-	344	148268809	-	SaurJH9_2396	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2363	 21.37	-2	2531098..2531214	-	38	148268810	-	SaurJH9_2397	-	hypothetical protein
2364	 30.79	0	2531319..2531750	-	143	148268811	-	SaurJH9_2398	-	hypothetical protein
2365	 32.26	0	2531802..2531894	+	30	148268812	-	SaurJH9_2399	-	hypothetical protein
2366	 32.00	0	2531957..2533234	-	425	148268813	-	SaurJH9_2400	-	hypothetical protein
2367	 30.93	0	2533395..2534018	+	207	148268814	-	SaurJH9_2401	-	TetR family transcriptional regulator
2368	 29.95	0	2534064..2535008	+	314	148268815	-	SaurJH9_2402	-	Mg2+ transporter protein, CorA family protein
2369	 35.27	0	2535093..2536535	-	480	148268816	-	SaurJH9_2403	-	PTS system, sucrose-specific IIBC subunit
2370	 30.99	0	2536718..2537101	+	127	148268817	-	SaurJH9_2404	-	hypothetical protein
2371	 28.58	-1	2538589..2540694	+	701	148268818	-	SaurJH9_2405	-	helix-turn-helix domain-containing protein
2372	 31.91	0	2540765..2541187	+	140	148268819	-	SaurJH9_2406	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
2373	 27.73	-1	2541451..2541807	+	118	148268820	-	SaurJH9_2407	-	hypothetical protein
2374	 33.10	0	2542125..2543402	-	425	148268821	-	SaurJH9_2408	-	sodium:dicarboxylate symporter
2375	 27.60	-1	2543584..2543949	-	121	148268822	-	SaurJH9_2409	-	hypothetical protein
2376	 28.86	-1	2544346..2544792	+	148	148268823	-	SaurJH9_2410	-	MarR family transcriptional regulator
2377	 29.68	-1	2544999..2545436	+	145	148268824	-	SaurJH9_2411	-	heat shock protein Hsp20
2378	 34.44	0	2545543..2546712	-	389	148268825	-	SaurJH9_2412	-	major facilitator transporter
2379	 31.37	0	2547081..2547995	+	304	148268826	-	SaurJH9_2413	-	Zn-dependent protease-like protein
2380	 27.94	-1	2547974..2548714	+	246	148268827	-	SaurJH9_2414	-	MerR family transcriptional regulator
2381	 33.94	0	2548972..2549625	-	217	148268828	-	SaurJH9_2415	-	two component LuxR family transcriptional regulator
2382	 33.62	0	2549648..2550682	-	344	148268829	-	SaurJH9_2416	-	histidine kinase
2383	 33.11	0	2550706..2551158	-	150	148268830	-	SaurJH9_2417	-	hypothetical protein
2384	 32.45	0	2551178..2551855	-	225	148268831	-	SaurJH9_2418	-	respiratory nitrate reductase, gamma subunit
2385	 30.03	0	2551848..2552423	-	191	148268832	-	SaurJH9_2419	-	nitrate reductase molybdenum cofactor assembly chaperone
2386	 37.88	+1	2552416..2553975	-	519	148268833	-	SaurJH9_2420	-	nitrate reductase, beta subunit
2387	 37.83	+1	2557913..2558890	-	325	148268834	-	SaurJH9_2422	-	uroporphyrin-III C-methyltransferase
2388	 35.24	0	2558881..2559195	-	104	148268835	-	SaurJH9_2423	-	nitrite reductase (NAD(P)H), small subunit
2389	 36.41	+1	2559199..2561604	-	801	148268836	-	SaurJH9_2424	-	nitrite reductase (NAD(P)H), large subunit
2390	 35.52	0	2561670..2562401	-	243	148268837	-	SaurJH9_2425	-	cobalamin (vitamin B12) biosynthesis CbiX protein
2391	 36.69	+1	2562631..2563167	-	178	148268838	-	SaurJH9_2426	-	GCN5-related N-acetyltransferase
2392	 33.82	0	2563401..2564225	-	274	148268839	-	SaurJH9_2427	-	formate/nitrite transporter
2393	 24.04	-2	2564442..2564624	-	60	148268840	-	SaurJH9_2428	-	hypothetical protein
2394	 33.97	0	2564708..2565175	-	155	148268841	-	SaurJH9_2429	-	activator of Hsp90 ATPase 1 family protein
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.