IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2210	 40.71	+2	2389624..2390016	-	130	148268657	rpsI	SaurJH9_2244	-	30S ribosomal protein S9
2211	 36.30	0	2390036..2390473	-	145	148268658	rplM	SaurJH9_2245	-	50S ribosomal protein L13
2212	 35.45	0	2390713..2391516	-	267	148268659	truA	SaurJH9_2246	-	tRNA pseudouridine synthase A
2213	 31.72	0	2391521..2392327	-	268	148268660	-	SaurJH9_2247	-	cobalt transport protein
2214	 34.26	0	2392317..2393177	-	286	148268661	-	SaurJH9_2248	-	cobalt transporter ATP-binding subunit
2215	 34.81	0	2393174..2393983	-	269	148268662	-	SaurJH9_2249	-	cobalt transporter ATP-binding subunit
2216	 37.40	+1	2394521..2394889	-	122	148268663	rplQ	SaurJH9_2250	-	50S ribosomal protein L17
2217	 33.76	0	2394906..2395850	-	314	148268664	-	SaurJH9_2251	-	DNA-directed RNA polymerase subunit alpha
2218	 40.00	+2	2395925..2396314	-	129	148268665	-	SaurJH9_2252	-	30S ribosomal protein S11
2219	 39.07	+1	2396338..2396703	-	121	148268666	rpsM	SaurJH9_2253	-	30S ribosomal protein S13
2220	 28.95	-1	2396726..2396839	-	37	148268667	rpmJ	SaurJH9_2254	-	50S ribosomal protein L36
2221	 33.33	0	2396871..2397089	-	72	148268668	-	SaurJH9_2255	-	translation initiation factor IF-1
2222	 35.65	0	2397282..2397929	-	215	148268669	-	SaurJH9_2256	-	adenylate kinase
2223	 34.57	0	2397946..2399238	-	430	148268670	secY	SaurJH9_2257	-	preprotein translocase subunit SecY
2224	 38.55	+1	2399238..2399678	-	146	148268671	rplO	SaurJH9_2258	-	50S ribosomal protein L15
2225	 35.56	0	2399695..2399874	-	59	148268672	rpmD	SaurJH9_2259	-	50S ribosomal protein L30
2226	 40.72	+2	2399891..2400391	-	166	148268673	rpsE	SaurJH9_2260	-	30S ribosomal protein S5
2227	 35.56	0	2400412..2400771	-	119	148268674	rplR	SaurJH9_2261	-	50S ribosomal protein L18
2228	 35.20	0	2400802..2401338	-	178	148268675	rplF	SaurJH9_2262	-	50S ribosomal protein L6
2229	 34.09	0	2401363..2401761	-	132	148268676	rpsH	SaurJH9_2263	-	30S ribosomal protein S8
2230	 38.71	+1	2401793..2401978	-	61	148268677	rpsN	SaurJH9_2264	-	30S ribosomal protein S14
2231	 34.26	0	2402001..2402540	-	179	148268678	rplE	SaurJH9_2265	-	50S ribosomal protein L5
2232	 33.65	0	2402567..2402884	-	105	148268679	rplX	SaurJH9_2266	-	50S ribosomal protein L24
2233	 40.92	+2	2402920..2403288	-	122	148268680	rplN	SaurJH9_2267	-	50S ribosomal protein L14
2234	 30.30	0	2403320..2403583	-	87	148268681	rpsQ	SaurJH9_2268	-	30S ribosomal protein S17
2235	 34.29	0	2403607..2403816	-	69	148268682	-	SaurJH9_2269	-	50S ribosomal protein L29
2236	 40.46	+2	2403806..2404240	-	144	148268683	rplP	SaurJH9_2270	-	50S ribosomal protein L16
2237	 38.23	+1	2404243..2404896	-	217	148268684	rpsC	SaurJH9_2271	-	30S ribosomal protein S3
2238	 37.29	+1	2404920..2405273	-	117	148268685	rplV	SaurJH9_2272	-	50S ribosomal protein L22
2239	 37.63	+1	2405302..2405580	-	92	148268686	rpsS	SaurJH9_2273	-	30S ribosomal protein S19
2240	 40.41	+2	2405647..2406480	-	277	148268687	rplB	SaurJH9_2274	-	50S ribosomal protein L2
2241	 35.14	0	2406513..2406788	-	91	148268688	rplW	SaurJH9_2275	-	50S ribosomal protein L23
2242	 38.94	+1	2406788..2407411	-	207	148268689	rplD	SaurJH9_2276	-	50S ribosomal protein L4
2243	 37.71	+1	2407438..2408100	-	220	148268690	rplC	SaurJH9_2277	-	50S ribosomal protein L3
2244	 37.54	+1	2408128..2408436	-	102	148268691	rpsJ	SaurJH9_2278	-	30S ribosomal protein S10
2245	 29.49	-1	2408793..2409182	+	129	148268692	-	SaurJH9_2279	-	hypothetical protein
2246	 35.43	0	2409373..2410707	-	444	148268693	-	SaurJH9_2280	-	xanthine/uracil/vitamin C permease
2247	 33.15	0	2410820..2412955	-	711	148268694	-	SaurJH9_2281	-	DNA topoisomerase III
2248	 31.76	0	2413130..2414017	+	295	148268695	-	SaurJH9_2282	-	GCN5-related N-acetyltransferase
2249	 36.11	0	2414198..2415061	+	287	148268696	-	SaurJH9_2283	-	sugar transport family protein
2250	 32.89	0	2415716..2416624	-	302	148268697	-	SaurJH9_2284	-	hypothetical protein
2251	 33.33	0	2416757..2416921	+	54	148268698	-	SaurJH9_2285	-	hypothetical protein
2252	 28.30	-1	2417166..2417483	+	105	148268699	-	SaurJH9_2286	-	hypothetical protein
2253	 34.03	0	2417667..2420834	-	1055	148268700	-	SaurJH9_2287	-	acriflavin resistance protein
2254	 33.97	0	2420951..2422216	-	421	148268701	-	SaurJH9_2288	-	methicillin resistance protein
2255	 29.93	0	2422848..2423612	-	254	148268702	-	SaurJH9_2289	-	hypothetical protein
2256	 31.75	0	2423774..2424214	+	146	148268703	-	SaurJH9_2290	-	MarR family transcriptional regulator
2257	 33.99	0	2424207..2425418	+	403	148268704	-	SaurJH9_2291	-	major facilitator transporter
2258	 28.77	-1	2425520..2425870	-	116	148268705	-	SaurJH9_2292	-	SarA family transcriptional regulator
2259	 33.43	0	2426447..2427469	-	340	148268706	-	SaurJH9_2293	-	molybdenum cofactor biosynthesis protein A
2260	 32.17	0	2427489..2428088	-	199	148268707	mobA	SaurJH9_2294	-	molybdopterin-guanine dinucleotide biosynthesis protein A
2261	 31.20	0	2428095..2428328	-	77	148268708	-	SaurJH9_2295	-	molybdopterin converting factor, subunit 1
2262	 35.57	0	2428334..2428780	-	148	148268709	-	SaurJH9_2296	-	molybdopterin biosynthesis MoaE protein
2263	 32.10	0	2428794..2429279	-	161	148268710	-	SaurJH9_2297	-	molybdopterin-guanine dinucleotide biosynthesis protein B
2264	 37.86	+1	2429276..2430535	-	419	148268711	-	SaurJH9_2298	-	molybdenum cofactor synthesis domain-containing protein
2265	 38.79	+1	2430598..2431092	+	164	148268712	moaC	SaurJH9_2299	-	molybdenum cofactor biosynthesis protein C
2266	 37.87	+1	2431094..2431600	-	168	148268713	-	SaurJH9_2300	-	molybdenum cofactor synthesis domain-containing protein
2267	 34.83	0	2431631..2432635	-	334	148268714	-	SaurJH9_2301	-	UBA/THIF-type NAD/FAD binding protein
2268	 32.18	0	2432805..2433410	-	201	148268715	-	SaurJH9_2302	-	ABC transporter related
2269	 35.12	0	2433411..2434082	-	223	148268716	-	SaurJH9_2303	-	molybdate ABC transporter, inner membrane subunit
2270	 29.37	-1	2434096..2434878	-	260	148268717	-	SaurJH9_2304	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
2271	 34.46	0	2435167..2435964	+	265	148268718	-	SaurJH9_2305	-	formate dehydrogenase accessory protein
2272	 33.85	0	2436136..2436906	-	256	148268719	-	SaurJH9_2306	-	GCN5-related N-acetyltransferase
2273	 34.05	0	2436983..2437537	-	184	148268720	-	SaurJH9_2307	-	BioY protein
2274	 34.08	0	2437658..2438599	-	313	148268721	-	SaurJH9_2308	-	inosine/uridine-preferring nucleoside hydrolase
2275	 32.23	0	2438997..2439905	-	302	148268722	-	SaurJH9_2309	-	periplasmic binding protein
2276	 34.46	0	2440119..2441273	-	384	148268723	-	SaurJH9_2310	-	acyl-CoA dehydrogenase type 2
2277	 33.44	0	2441490..2442395	-	301	148268724	-	SaurJH9_2311	-	Urea transporter
2278	 40.59	+2	2442655..2442957	+	100	148268725	ureA	SaurJH9_2312	-	urease subunit gamma
2279	 36.98	+1	2442971..2443381	+	136	148268726	ureB	SaurJH9_2313	-	urease subunit beta
2280	 37.82	+1	2443378..2445093	+	571	148268727	ureC	SaurJH9_2314	-	urease subunit alpha
2281	 33.11	0	2445106..2445558	+	150	148268728	ureE	SaurJH9_2315	-	urease accessory protein UreE
2282	 32.90	0	2445551..2446240	+	229	148268729	-	SaurJH9_2316	-	urease accessory protein UreF
2283	 34.96	0	2446253..2446867	+	204	148268730	-	SaurJH9_2317	-	urease accessory protein UreG
2284	 30.82	0	2446867..2447703	+	278	148268731	-	SaurJH9_2318	-	urease accessory protein UreD
2285	 24.71	-2	2447892..2448239	-	115	148268732	-	SaurJH9_2319	-	SarA family transcriptional regulator
2286	 27.52	-1	2448667..2448993	-	108	148268733	-	SaurJH9_2320	-	hypothetical protein
2287	 27.96	-1	2449057..2449800	-	247	148268734	-	SaurJH9_2321	-	SarA family transcriptional regulator
2288	 27.81	-1	2449826..2451781	-	651	148268735	-	SaurJH9_2322	-	helix-turn-helix domain-containing protein
2289	 39.05	+1	2452391..2453194	+	267	148268736	-	SaurJH9_2323	-	CHAP domain-containing protein
2290	 35.05	0	2453628..2455028	-	466	148268737	-	SaurJH9_2324	-	Na+/H+ antiporter NhaC
2291	 33.24	0	2455123..2456205	-	360	148268738	-	SaurJH9_2325	-	NAD/NADP octopine/nopaline dehydrogenase
2292	 28.84	-1	2456453..2456875	+	140	148268739	-	SaurJH9_2326	-	hypothetical protein
2293	 37.92	+1	2457112..2457612	+	166	148268740	-	SaurJH9_2327	-	CHAP domain-containing protein
2294	 35.64	0	2457973..2458926	+	317	148268741	-	SaurJH9_2328	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
2295	 32.89	0	2459018..2460142	-	374	148268742	-	SaurJH9_2329	-	hypothetical protein
2296	 32.56	0	2460453..2461229	-	258	148268743	-	SaurJH9_2330	-	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
2297	 27.35	-1	2461251..2461484	-	77	148268744	-	SaurJH9_2331	-	hypothetical protein
2298	 31.22	0	2461712..2462185	-	157	148268745	-	SaurJH9_2332	-	hypothetical protein
2299	 35.43	0	2462185..2465139	-	984	148268746	-	SaurJH9_2333	-	formate dehydrogenase, alpha subunit
2300	 35.53	0	2465742..2466698	-	318	148268747	-	SaurJH9_2334	-	cell envelope-related transcriptional attenuator
2301	 32.21	0	2466822..2467619	-	265	148268748	-	SaurJH9_2335	-	inositol-phosphate phosphatase
2302	 31.02	0	2468004..2468696	+	230	148268749	-	SaurJH9_2336	-	helix-turn-helix, type 11 domain-containing protein
2303	 30.35	0	2468721..2469458	-	245	148268750	-	SaurJH9_2337	-	hypothetical protein
2304	 25.57	-2	2469528..2469836	+	102	148268751	-	SaurJH9_2338	-	hypothetical protein
2305	 29.32	-1	2470281..2471153	+	290	148268752	-	SaurJH9_2339	-	RpiR family transcriptional regulator
2306	 34.20	0	2471540..2472919	-	459	148268753	-	SaurJH9_2340	-	amino acid permease-associated region
2307	 33.61	0	2473199..2473555	+	118	148268754	-	SaurJH9_2341	-	hypothetical protein
2308	 29.03	-1	2473552..2473737	+	61	148268755	-	SaurJH9_2342	-	hypothetical protein
2309	 32.29	0	2473833..2474024	-	63	148268756	-	SaurJH9_2343	-	hypothetical protein
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.