IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
177	 30.70	0	221656..222834	+	392	148266624	-	SaurJH9_0184	-	hypothetical protein
178	 41.44	+2	223041..223262	+	73	148266625	-	SaurJH9_0185	-	hypothetical protein
179	 23.37	-2	223333..225018	+	561	148266626	-	SaurJH9_0186	-	hypothetical protein
180	 25.59	-2	225056..225520	+	154	148266627	-	SaurJH9_0187	-	hypothetical protein
181	 26.56	-1	225532..226254	+	240	148266628	-	SaurJH9_0188	-	ABC transporter related
182	 30.81	0	226420..226617	+	65	148266629	-	SaurJH9_0189	-	XRE family transcriptional regulator
183	 35.47	0	227127..228719	-	530	148266630	-	SaurJH9_0190	-	ABC transporter related
184	 33.18	0	228847..230154	+	435	148266631	-	SaurJH9_0191	-	binding-protein-dependent transport systems inner membrane component
185	 34.62	0	230160..231323	+	387	148266632	-	SaurJH9_0192	-	binding-protein-dependent transport systems inner membrane component
186	 33.16	0	231340..233115	+	591	148266633	-	SaurJH9_0193	-	RGD-containing lipoprotein
187	 37.82	+1	233153..235159	+	668	148266634	-	SaurJH9_0194	-	gamma-glutamyltransferase
188	 29.72	-1	235472..236245	-	257	148266635	-	SaurJH9_0195	-	putative lipoprotein
189	 32.38	0	236434..237060	-	208	148266636	-	SaurJH9_0196	-	azoreductase
190	 35.92	0	237269..237847	+	192	148266637	-	SaurJH9_0197	-	peptidase M23B
191	 34.97	0	238231..239328	+	365	148266638	-	SaurJH9_0198	-	ABC transporter related
192	 34.20	0	239341..240612	+	423	148266639	-	SaurJH9_0199	-	extracellular solute-binding protein
193	 35.70	0	240615..241883	+	422	148266640	-	SaurJH9_0200	-	binding-protein-dependent transport systems inner membrane component
194	 33.81	0	241885..242724	+	279	148266641	-	SaurJH9_0201	-	binding-protein-dependent transport systems inner membrane component
195	 39.63	+1	242795..243874	+	359	148266642	-	SaurJH9_0202	-	oxidoreductase domain-containing protein
196	 39.77	+2	243899..244939	+	346	148266643	-	SaurJH9_0203	-	oxidoreductase domain-containing protein
197	 35.60	0	244994..245962	+	322	148266644	-	SaurJH9_0204	-	xylose isomerase domain-containing protein
198	 26.46	-2	246323..246817	-	164	148266645	-	SaurJH9_0205	-	hypothetical protein
199	 36.16	0	247050..248429	+	459	148266646	uhpT	SaurJH9_0206	-	sugar phosphate antiporter
200	 32.54	0	248788..249546	-	252	148266647	-	SaurJH9_0207	-	response regulator receiver protein
201	 32.88	0	249539..251095	-	518	148266648	-	SaurJH9_0208	-	histidine kinase internal region
202	 34.16	0	251092..252060	-	322	148266649	-	SaurJH9_0209	-	ABC-type Fe3+ transport system periplasmic component-like protein
203	 36.76	+1	252648..254897	+	749	148266650	-	SaurJH9_0210	-	formate acetyltransferase
204	 36.38	+1	254920..255675	+	251	148266651	-	SaurJH9_0211	-	pyruvate formate-lyase activating enzyme
205	 31.01	0	255997..257760	+	587	148266652	-	SaurJH9_0212	-	hypothetical protein
206	 31.88	0	257924..258268	-	114	148266653	-	SaurJH9_0213	-	hypothetical protein
207	 34.65	0	258458..260434	+	658	148266654	-	SaurJH9_0214	-	staphylocoagulase precursor
208	 43.63	+2	261021..262205	-	394	148266655	-	SaurJH9_0215	-	acetyl-CoA acetyltransferase
209	 37.53	+1	262235..264496	-	753	148266656	-	SaurJH9_0216	-	3-hydroxyacyl-CoA dehydrogenase, NAD-binding
210	 39.19	+1	264682..265893	-	403	148266657	-	SaurJH9_0217	-	acyl-CoA dehydrogenase domain-containing protein
211	 37.38	+1	266005..267510	-	501	148266658	-	SaurJH9_0218	-	AMP-dependent synthetase and ligase
212	 36.92	+1	267536..269098	-	520	148266659	-	SaurJH9_0219	-	coenzyme A transferase
213	 34.55	0	269467..270696	+	409	148266660	-	SaurJH9_0220	-	hypothetical protein
214	 31.07	0	271010..272422	-	470	148266661	-	SaurJH9_0221	-	extracellular solute-binding protein
215	 35.29	0	272683..273039	-	118	148266662	-	SaurJH9_0222	-	hypothetical protein
216	 25.86	-2	273196..273369	-	57	148266663	-	SaurJH9_0223	-	hypothetical protein
217	 34.90	0	273395..274540	-	381	148266664	-	SaurJH9_0224	-	globin
218	 37.21	+1	275113..276066	+	317	148266665	-	SaurJH9_0225	-	L-lactate dehydrogenase
219	 37.30	+1	276234..276359	-	41	148266666	-	SaurJH9_0226	-	hypothetical protein
220	 39.22	+1	276386..277915	-	509	148266667	-	SaurJH9_0227	-	PTS system, glucose-like IIB subunint
221	 39.53	+1	278277..279212	+	311	148266668	-	SaurJH9_0228	-	purine nucleosidase
222	 33.09	0	279550..281646	+	698	148266669	-	SaurJH9_0229	-	transcriptional antiterminator, BglG
223	 35.26	0	281631..282098	+	155	148266670	-	SaurJH9_0230	-	putative PTS IIA-like nitrogen-regulatory protein PtsN
224	 31.18	0	282121..282399	+	92	148266671	-	SaurJH9_0231	-	phosphotransferase system, lactose/cellobiose-specific IIB subunit
225	 36.98	+1	282626..283885	+	419	148266672	-	SaurJH9_0232	-	PTS system, galactitol-specific IIC subunit
226	 36.74	+1	283903..284958	+	351	148266673	-	SaurJH9_0233	-	alcohol dehydrogenase
227	 30.61	0	284960..285106	+	48	148266674	-	SaurJH9_0234	-	hypothetical protein
228	 38.12	+1	285130..286173	+	347	148266675	-	SaurJH9_0235	-	alcohol dehydrogenase
229	 32.91	0	286701..287417	+	238	148266676	-	SaurJH9_0236	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
230	 35.09	0	287410..288435	+	341	148266677	-	SaurJH9_0237	-	alcohol dehydrogenase
231	 32.86	0	288457..290151	+	564	148266678	-	SaurJH9_0238	-	CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
232	 33.42	0	290579..291748	+	389	148266679	-	SaurJH9_0239	-	CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
233	 32.22	0	292024..292740	+	238	148266680	ispD	SaurJH9_0240	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
234	 33.33	0	292733..293758	+	341	148266681	-	SaurJH9_0241	-	alcohol dehydrogenase
235	 31.97	0	293780..295468	+	562	148266682	-	SaurJH9_0242	-	CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
236	 32.11	0	295501..297222	+	573	148266683	-	SaurJH9_0243	-	glycosyl transferase family protein
237	 32.30	0	297366..298040	+	224	148266684	-	SaurJH9_0244	-	cell wall biosynthesis protein ScdA
238	 35.56	0	298285..300039	+	584	148266685	-	SaurJH9_0245	-	signal transduction histidine kinase, LytS
239	 32.39	0	300042..300782	+	246	148266686	-	SaurJH9_0246	-	LytTR family two component transcriptional regulator
240	 34.47	0	300901..301338	+	145	148266687	-	SaurJH9_0247	-	murein hydrolase regulator LrgA
241	 36.61	+1	301331..302032	+	233	148266688	-	SaurJH9_0248	-	antiholin-like protein LrgB
242	 33.05	0	302140..302844	-	234	148266689	-	SaurJH9_0249	-	GntR family transcriptional regulator
243	 35.23	0	302993..303784	+	263	148266690	-	SaurJH9_0250	-	PTS system, glucose subfamily, IIA subunit
244	 36.67	+1	303800..305236	+	478	148266691	-	SaurJH9_0251	-	glycoside hydrolase family protein
245	 34.12	0	305613..306374	-	253	148266692	-	SaurJH9_0252	-	hypothetical protein
246	 37.70	+1	306625..307539	-	304	148266693	-	SaurJH9_0253	-	ribokinase
247	 32.59	0	307567..307971	-	134	148266694	-	SaurJH9_0254	-	D-ribose pyranase
248	 37.98	+1	307986..308867	-	293	148266695	-	SaurJH9_0255	-	sugar transport family protein
249	 37.24	+1	309099..310097	-	332	148266696	-	SaurJH9_0256	-	regulatory protein, LacI
250	 26.72	-1	310477..310869	+	130	148266697	-	SaurJH9_0257	-	hypothetical protein
251	 37.69	+1	310997..312373	-	458	148266698	-	SaurJH9_0258	-	major facilitator transporter
252	 35.95	0	312607..313599	+	330	148266699	-	SaurJH9_0259	-	penicillin amidase
253	 39.75	+2	313925..314875	+	316	148266700	-	SaurJH9_0260	-	peptidoglycan hydrolase
254	 31.36	0	314927..315586	-	219	148266701	-	SaurJH9_0261	-	ABC transporter related
255	 31.38	0	315600..316520	-	306	148266702	-	SaurJH9_0262	-	hypothetical protein
256	 32.22	0	316517..317683	-	388	148266703	-	SaurJH9_0263	-	hypothetical protein
257	 29.00	-1	317751..319274	-	507	148266704	-	SaurJH9_0264	-	hypothetical protein
258	 37.21	+1	319605..320507	-	300	148266705	-	SaurJH9_0265	-	CHAP domain-containing protein
259	 37.76	+1	320746..321039	+	97	148266706	-	SaurJH9_0266	-	hypothetical protein
260	 30.79	0	321122..324151	+	1009	148266707	-	SaurJH9_0267	-	hypothetical protein
261	 32.46	0	324151..324609	+	152	148266708	-	SaurJH9_0268	-	hypothetical protein
262	 29.22	-1	324581..324823	+	80	148266709	-	SaurJH9_0269	-	hypothetical protein
263	 29.81	0	324836..326170	+	444	148266710	-	SaurJH9_0270	-	hypothetical protein
264	 33.90	0	326192..330631	+	1479	148266711	-	SaurJH9_0271	-	cell divisionFtsK/SpoIIIE
265	 31.04	0	330661..331053	+	130	148266712	-	SaurJH9_0272	-	hypothetical protein
266	 38.41	+1	331069..331383	+	104	148266713	-	SaurJH9_0273	-	hypothetical protein
267	 29.06	-1	331380..332057	+	225	148266714	-	SaurJH9_0274	-	hypothetical protein
268	 37.11	+1	332057..332374	+	105	148266715	-	SaurJH9_0275	-	hypothetical protein
269	 34.96	0	332384..334228	+	614	148266716	-	SaurJH9_0276	-	hypothetical protein
270	 31.30	0	334239..334730	+	163	148266717	-	SaurJH9_0277	-	hypothetical protein
271	 27.34	-1	334933..335616	+	227	148266718	-	SaurJH9_0278	-	hypothetical protein
272	 28.10	-1	335762..336373	+	203	148266719	-	SaurJH9_0279	-	hypothetical protein
273	 26.94	-1	336508..336726	+	72	148266720	-	SaurJH9_0280	-	hypothetical protein
274	 29.54	-1	336858..337358	+	166	148266721	-	SaurJH9_0281	-	hypothetical protein
275	 29.74	-1	337369..337869	+	166	148266722	-	SaurJH9_0282	-	hypothetical protein
276	 29.44	-1	337880..338341	+	153	148266723	-	SaurJH9_0283	-	hypothetical protein
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.