IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2146	 36.80	+1	2300738..2300968	-	76	148268593	-	SaurJH9_2178	-	hypothetical protein
2147	 34.50	0	2300999..2301937	-	312	148268594	-	SaurJH9_2179	-	mannose-6-phosphate isomerase, class I
2148	 34.53	0	2302373..2303038	-	221	148268595	-	SaurJH9_2180	-	hypothetical protein
2149	 34.27	0	2303190..2303510	+	106	148268596	-	SaurJH9_2181	-	regulatory protein, ArsR
2150	 33.23	0	2303512..2304489	+	325	148268597	-	SaurJH9_2182	-	cation diffusion facilitator family transporter
2151	 27.56	-1	2304755..2305846	+	363	148268598	-	SaurJH9_2183	-	hypothetical protein
2152	 33.22	0	2307879..2308736	-	285	148268599	-	SaurJH9_2185	-	Cof-like hydrolase
2153	 34.23	0	2308804..2309586	-	260	148268600	-	SaurJH9_2186	-	ABC transporter related
2154	 34.99	0	2309818..2311623	-	601	148268601	-	SaurJH9_2187	-	D-fructose-6-phosphate amidotransferase
2155	 35.87	0	2312304..2313842	+	512	148268602	-	SaurJH9_2188	-	PTS system, mannitol-specific IIC subunit
2156	 33.38	0	2313877..2316009	+	710	148268603	-	SaurJH9_2189	-	transcriptional antiterminator, BglG
2157	 35.63	0	2316021..2316455	+	144	148268604	-	SaurJH9_2190	-	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
2158	 33.33	0	2316455..2317561	+	368	148268605	-	SaurJH9_2191	-	mannitol-1-phosphate 5-dehydrogenase
2159	 35.21	0	2317880..2325325	-	2481	148268606	-	SaurJH9_2192	-	cell wall anchor domain-containing protein
2160	 34.51	0	2325603..2326958	-	451	148268607	-	SaurJH9_2193	-	phosphoglucosamine mutase
2161	 30.12	0	2326985..2327917	-	310	148268608	-	SaurJH9_2194	-	hypothetical protein
2162	 33.58	0	2327919..2328728	-	269	148268609	-	SaurJH9_2195	-	hypothetical protein
2163	 31.57	0	2328917..2329825	-	302	148268610	-	SaurJH9_2196	-	arginase
2164	 36.53	+1	2336066..2337130	-	354	148268611	-	SaurJH9_2197	-	ATPase involved in chromosome partitioning-like protein
2165	 33.26	0	2337278..2338723	-	481	148268612	-	SaurJH9_2198	-	EmrB/QacA family drug resistance transporter
2166	 26.71	-1	2339043..2339510	-	155	148268613	-	SaurJH9_2199	-	hypothetical protein
2167	 30.43	0	2339615..2340958	-	447	148268614	-	SaurJH9_2200	-	major facilitator transporter
2168	 31.87	0	2341135..2341818	-	227	148268615	-	SaurJH9_2201	-	hemolysin III family channel protein
2169	 31.31	0	2341837..2343024	-	395	148268616	-	SaurJH9_2202	-	UTP--glucose-1-phosphate uridylyltransferase
2170	 34.11	0	2343068..2343583	-	171	148268617	-	SaurJH9_2203	-	hypothetical protein
2171	 30.65	0	2343760..2344020	+	86	148268618	-	SaurJH9_2204	-	hypothetical protein
2172	 35.81	0	2344152..2345522	-	456	148268619	-	SaurJH9_2205	-	nucleoside recognition domain-containing protein
2173	 33.44	0	2345758..2346726	-	322	148268620	-	SaurJH9_2206	-	transport system permease protein
2174	 34.30	0	2346723..2347754	-	343	148268621	-	SaurJH9_2207	-	transport system permease protein
2175	 30.89	0	2347766..2348749	-	327	148268622	-	SaurJH9_2208	-	periplasmic binding protein
2176	 30.81	0	2349141..2350211	-	356	148268623	-	SaurJH9_2209	-	alanine racemase domain-containing protein
2177	 32.48	0	2350218..2351975	-	585	148268624	-	SaurJH9_2210	-	hypothetical protein
2178	 32.24	0	2351962..2353155	-	397	148268625	-	SaurJH9_2211	-	major facilitator transporter
2179	 32.42	0	2353263..2355233	+	656	148268626	-	SaurJH9_2212	-	hypothetical protein
2180	 31.57	0	2355394..2355903	-	169	148268627	-	SaurJH9_2213	-	alkaline shock protein 23
2181	 30.42	0	2355966..2356205	-	79	148268628	-	SaurJH9_2214	-	hypothetical protein
2182	 32.77	0	2356218..2356754	-	178	148268629	-	SaurJH9_2215	-	hypothetical protein
2183	 35.51	0	2356929..2358491	-	520	148268630	-	SaurJH9_2216	-	choline/carnitine/betaine transporter
2184	 33.73	0	2358799..2359806	-	335	148268631	-	SaurJH9_2217	-	zinc-binding alcohol dehydrogenase
2185	 38.02	+1	2360041..2361042	-	333	148268632	-	SaurJH9_2218	-	alcohol dehydrogenase
2186	 33.79	0	2361320..2362189	-	289	148268633	-	SaurJH9_2219	-	hypothetical protein
2187	 34.75	0	2362455..2363867	-	470	148268634	-	SaurJH9_2220	-	6-phospho-beta-galactosidase
2188	 35.79	0	2363885..2365597	-	570	148268635	-	SaurJH9_2221	-	PTS system, lactose-specific IIC subunit
2189	 36.22	0	2365603..2365914	-	103	148268636	-	SaurJH9_2222	-	PTS system, lactose-specific IIA component
2190	 35.37	0	2365936..2366916	-	326	148268637	-	SaurJH9_2223	-	tagatose 1,6-diphosphate aldolase
2191	 35.16	0	2366920..2367852	-	310	148268638	-	SaurJH9_2224	-	tagatose-6-phosphate kinase
2192	 34.30	0	2367865..2368380	-	171	148268639	-	SaurJH9_2225	-	galactose-6-phosphate isomerase subunit LacB
2193	 36.60	+1	2368396..2368824	-	142	148268640	-	SaurJH9_2226	-	galactose-6-phosphate isomerase subunit LacA
2194	 34.22	0	2369191..2369982	-	263	148268641	-	SaurJH9_2227	-	DeoR family transcriptional regulator
2195	 35.93	0	2370197..2370928	+	243	148268642	-	SaurJH9_2228	-	NAD-dependent deacetylase
2196	 25.98	-2	2371213..2371416	-	67	148268643	-	SaurJH9_2229	-	hypothetical protein
2197	 33.33	0	2371649..2372497	-	282	148268644	-	SaurJH9_2230	-	aldo/keto reductase
2198	 29.26	-1	2372567..2372983	-	138	148268645	-	SaurJH9_2231	-	MerR family transcriptional regulator
2199	 33.17	0	2373391..2375820	+	809	148268646	-	SaurJH9_2232	-	polysaccharide lyase family protein 8
2200	 31.46	0	2375880..2376734	-	284	148268647	-	SaurJH9_2233	-	peptidase M23B
2201	 29.90	0	2376945..2377760	-	271	148268648	-	SaurJH9_2234	-	HAD family hydrolase
2202	 31.46	0	2378055..2378480	+	141	148268649	-	SaurJH9_2235	-	MAP domain-containing protein
2203	 33.19	0	2378864..2379568	-	234	148268650	-	SaurJH9_2236	-	acetolactate decarboxylase
2204	 34.77	0	2379605..2381269	-	554	148268651	-	SaurJH9_2237	-	acetolactate synthase
2205	 27.34	-1	2382519..2383535	-	338	148268652	-	SaurJH9_2238	-	RNA-directed DNA polymerase (Reverse transcriptase)
2206	 23.02	-2	2383780..2384409	-	209	148268653	-	SaurJH9_2239	-	hypothetical protein
2207	 21.76	-2	2384409..2385056	-	215	148268654	-	SaurJH9_2240	-	hypothetical protein
2208	 29.49	-1	2387011..2387166	-	51	148268655	-	SaurJH9_2242	-	hypothetical protein
2209	 25.74	-2	2388502..2389449	+	315	148268656	-	SaurJH9_2243	-	hypothetical protein
2210	 40.71	+2	2389624..2390016	-	130	148268657	rpsI	SaurJH9_2244	-	30S ribosomal protein S9
2211	 36.30	0	2390036..2390473	-	145	148268658	rplM	SaurJH9_2245	-	50S ribosomal protein L13
2212	 35.45	0	2390713..2391516	-	267	148268659	truA	SaurJH9_2246	-	tRNA pseudouridine synthase A
2213	 31.72	0	2391521..2392327	-	268	148268660	-	SaurJH9_2247	-	cobalt transport protein
2214	 34.26	0	2392317..2393177	-	286	148268661	-	SaurJH9_2248	-	cobalt transporter ATP-binding subunit
2215	 34.81	0	2393174..2393983	-	269	148268662	-	SaurJH9_2249	-	cobalt transporter ATP-binding subunit
2216	 37.40	+1	2394521..2394889	-	122	148268663	rplQ	SaurJH9_2250	-	50S ribosomal protein L17
2217	 33.76	0	2394906..2395850	-	314	148268664	-	SaurJH9_2251	-	DNA-directed RNA polymerase subunit alpha
2218	 40.00	+2	2395925..2396314	-	129	148268665	-	SaurJH9_2252	-	30S ribosomal protein S11
2219	 39.07	+1	2396338..2396703	-	121	148268666	rpsM	SaurJH9_2253	-	30S ribosomal protein S13
2220	 28.95	-1	2396726..2396839	-	37	148268667	rpmJ	SaurJH9_2254	-	50S ribosomal protein L36
2221	 33.33	0	2396871..2397089	-	72	148268668	-	SaurJH9_2255	-	translation initiation factor IF-1
2222	 35.65	0	2397282..2397929	-	215	148268669	-	SaurJH9_2256	-	adenylate kinase
2223	 34.57	0	2397946..2399238	-	430	148268670	secY	SaurJH9_2257	-	preprotein translocase subunit SecY
2224	 38.55	+1	2399238..2399678	-	146	148268671	rplO	SaurJH9_2258	-	50S ribosomal protein L15
2225	 35.56	0	2399695..2399874	-	59	148268672	rpmD	SaurJH9_2259	-	50S ribosomal protein L30
2226	 40.72	+2	2399891..2400391	-	166	148268673	rpsE	SaurJH9_2260	-	30S ribosomal protein S5
2227	 35.56	0	2400412..2400771	-	119	148268674	rplR	SaurJH9_2261	-	50S ribosomal protein L18
2228	 35.20	0	2400802..2401338	-	178	148268675	rplF	SaurJH9_2262	-	50S ribosomal protein L6
2229	 34.09	0	2401363..2401761	-	132	148268676	rpsH	SaurJH9_2263	-	30S ribosomal protein S8
2230	 38.71	+1	2401793..2401978	-	61	148268677	rpsN	SaurJH9_2264	-	30S ribosomal protein S14
2231	 34.26	0	2402001..2402540	-	179	148268678	rplE	SaurJH9_2265	-	50S ribosomal protein L5
2232	 33.65	0	2402567..2402884	-	105	148268679	rplX	SaurJH9_2266	-	50S ribosomal protein L24
2233	 40.92	+2	2402920..2403288	-	122	148268680	rplN	SaurJH9_2267	-	50S ribosomal protein L14
2234	 30.30	0	2403320..2403583	-	87	148268681	rpsQ	SaurJH9_2268	-	30S ribosomal protein S17
2235	 34.29	0	2403607..2403816	-	69	148268682	-	SaurJH9_2269	-	50S ribosomal protein L29
2236	 40.46	+2	2403806..2404240	-	144	148268683	rplP	SaurJH9_2270	-	50S ribosomal protein L16
2237	 38.23	+1	2404243..2404896	-	217	148268684	rpsC	SaurJH9_2271	-	30S ribosomal protein S3
2238	 37.29	+1	2404920..2405273	-	117	148268685	rplV	SaurJH9_2272	-	50S ribosomal protein L22
2239	 37.63	+1	2405302..2405580	-	92	148268686	rpsS	SaurJH9_2273	-	30S ribosomal protein S19
2240	 40.41	+2	2405647..2406480	-	277	148268687	rplB	SaurJH9_2274	-	50S ribosomal protein L2
2241	 35.14	0	2406513..2406788	-	91	148268688	rplW	SaurJH9_2275	-	50S ribosomal protein L23
2242	 38.94	+1	2406788..2407411	-	207	148268689	rplD	SaurJH9_2276	-	50S ribosomal protein L4
2243	 37.71	+1	2407438..2408100	-	220	148268690	rplC	SaurJH9_2277	-	50S ribosomal protein L3
2244	 37.54	+1	2408128..2408436	-	102	148268691	rpsJ	SaurJH9_2278	-	30S ribosomal protein S10
2245	 29.49	-1	2408793..2409182	+	129	148268692	-	SaurJH9_2279	-	hypothetical protein
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.