IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2121	 34.53	0	2273939..2274775	-	278	148268568	-	SaurJH9_2153	-	HemK family modification methylase
2122	 35.19	0	2274762..2275838	-	358	148268569	prfA	SaurJH9_2154	-	peptide chain release factor 1
2123	 36.83	+1	2275839..2276438	-	199	148268570	-	SaurJH9_2155	-	thymidine kinase
2124	 35.69	0	2276785..2277039	-	84	148268571	rpmE2	SaurJH9_2156	-	50S ribosomal protein L31 type B
2125	 35.76	0	2277157..2278473	-	438	148268572	rho	SaurJH9_2157	-	transcription termination factor Rho
2126	 36.27	0	2278720..2280147	-	475	148268573	-	SaurJH9_2158	-	aldehyde dehydrogenase
2127	 35.42	0	2280385..2280720	-	111	148268574	-	SaurJH9_2159	-	HxlR family transcriptional regulator
2128	 34.92	0	2280809..2282068	-	419	148268575	-	SaurJH9_2160	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
2129	 36.59	+1	2282534..2283394	-	286	148268576	-	SaurJH9_2161	-	fructose-bisphosphate aldolase
2130	 31.03	0	2283612..2284133	+	173	148268577	-	SaurJH9_2162	-	hypothetical protein
2131	 33.77	0	2284242..2285852	-	536	148268578	-	SaurJH9_2163	-	CTP synthetase
2132	 32.77	0	2286188..2286718	-	176	148268579	-	SaurJH9_2164	-	DNA-directed RNA polymerase subunit delta
2133	 32.52	0	2286830..2287690	-	286	148268580	-	SaurJH9_2165	-	GCN5-related N-acetyltransferase
2134	 37.44	+1	2288115..2288918	+	267	148268581	-	SaurJH9_2166	-	pantothenate kinase
2135	 31.99	0	2289049..2289720	-	223	148268582	-	SaurJH9_2167	-	hypothetical protein
2136	 34.25	0	2290119..2291312	-	397	148268583	-	SaurJH9_2168	-	hypothetical protein
2137	 37.13	+1	2291312..2292496	-	394	148268584	-	SaurJH9_2169	-	amidohydrolase
2138	 33.97	0	2292807..2293277	+	156	148268585	-	SaurJH9_2170	-	S-ribosylhomocysteinase
2139	 31.62	0	2293429..2293779	-	116	148268586	-	SaurJH9_2171	-	membrane protein-like protein
2140	 36.10	0	2293793..2295094	-	433	148268587	-	SaurJH9_2172	-	pyrimidine-nucleoside phosphorylase
2141	 40.72	+2	2295373..2296035	-	220	148268588	-	SaurJH9_2173	-	deoxyribose-phosphate aldolase
2142	 34.60	0	2296349..2297059	+	236	148268589	deoD	SaurJH9_2174	-	purine nucleoside phosphorylase
2143	 33.56	0	2297180..2297623	-	147	148268590	-	SaurJH9_2175	-	Ferritin, Dps family protein
2144	 32.13	0	2297823..2298236	-	137	148268591	-	SaurJH9_2176	-	hypothetical protein
2145	 32.02	0	2298693..2300066	-	457	148268592	-	SaurJH9_2177	-	hypothetical protein
2146	 36.80	+1	2300738..2300968	-	76	148268593	-	SaurJH9_2178	-	hypothetical protein
2147	 34.50	0	2300999..2301937	-	312	148268594	-	SaurJH9_2179	-	mannose-6-phosphate isomerase, class I
2148	 34.53	0	2302373..2303038	-	221	148268595	-	SaurJH9_2180	-	hypothetical protein
2149	 34.27	0	2303190..2303510	+	106	148268596	-	SaurJH9_2181	-	regulatory protein, ArsR
2150	 33.23	0	2303512..2304489	+	325	148268597	-	SaurJH9_2182	-	cation diffusion facilitator family transporter
2151	 27.56	-1	2304755..2305846	+	363	148268598	-	SaurJH9_2183	-	hypothetical protein
2152	 33.22	0	2307879..2308736	-	285	148268599	-	SaurJH9_2185	-	Cof-like hydrolase
2153	 34.23	0	2308804..2309586	-	260	148268600	-	SaurJH9_2186	-	ABC transporter related
2154	 34.99	0	2309818..2311623	-	601	148268601	-	SaurJH9_2187	-	D-fructose-6-phosphate amidotransferase
2155	 35.87	0	2312304..2313842	+	512	148268602	-	SaurJH9_2188	-	PTS system, mannitol-specific IIC subunit
2156	 33.38	0	2313877..2316009	+	710	148268603	-	SaurJH9_2189	-	transcriptional antiterminator, BglG
2157	 35.63	0	2316021..2316455	+	144	148268604	-	SaurJH9_2190	-	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
2158	 33.33	0	2316455..2317561	+	368	148268605	-	SaurJH9_2191	-	mannitol-1-phosphate 5-dehydrogenase
2159	 35.21	0	2317880..2325325	-	2481	148268606	-	SaurJH9_2192	-	cell wall anchor domain-containing protein
2160	 34.51	0	2325603..2326958	-	451	148268607	-	SaurJH9_2193	-	phosphoglucosamine mutase
2161	 30.12	0	2326985..2327917	-	310	148268608	-	SaurJH9_2194	-	hypothetical protein
2162	 33.58	0	2327919..2328728	-	269	148268609	-	SaurJH9_2195	-	hypothetical protein
2163	 31.57	0	2328917..2329825	-	302	148268610	-	SaurJH9_2196	-	arginase
2164	 36.53	+1	2336066..2337130	-	354	148268611	-	SaurJH9_2197	-	ATPase involved in chromosome partitioning-like protein
2165	 33.26	0	2337278..2338723	-	481	148268612	-	SaurJH9_2198	-	EmrB/QacA family drug resistance transporter
2166	 26.71	-1	2339043..2339510	-	155	148268613	-	SaurJH9_2199	-	hypothetical protein
2167	 30.43	0	2339615..2340958	-	447	148268614	-	SaurJH9_2200	-	major facilitator transporter
2168	 31.87	0	2341135..2341818	-	227	148268615	-	SaurJH9_2201	-	hemolysin III family channel protein
2169	 31.31	0	2341837..2343024	-	395	148268616	-	SaurJH9_2202	-	UTP--glucose-1-phosphate uridylyltransferase
2170	 34.11	0	2343068..2343583	-	171	148268617	-	SaurJH9_2203	-	hypothetical protein
2171	 30.65	0	2343760..2344020	+	86	148268618	-	SaurJH9_2204	-	hypothetical protein
2172	 35.81	0	2344152..2345522	-	456	148268619	-	SaurJH9_2205	-	nucleoside recognition domain-containing protein
2173	 33.44	0	2345758..2346726	-	322	148268620	-	SaurJH9_2206	-	transport system permease protein
2174	 34.30	0	2346723..2347754	-	343	148268621	-	SaurJH9_2207	-	transport system permease protein
2175	 30.89	0	2347766..2348749	-	327	148268622	-	SaurJH9_2208	-	periplasmic binding protein
2176	 30.81	0	2349141..2350211	-	356	148268623	-	SaurJH9_2209	-	alanine racemase domain-containing protein
2177	 32.48	0	2350218..2351975	-	585	148268624	-	SaurJH9_2210	-	hypothetical protein
2178	 32.24	0	2351962..2353155	-	397	148268625	-	SaurJH9_2211	-	major facilitator transporter
2179	 32.42	0	2353263..2355233	+	656	148268626	-	SaurJH9_2212	-	hypothetical protein
2180	 31.57	0	2355394..2355903	-	169	148268627	-	SaurJH9_2213	-	alkaline shock protein 23
2181	 30.42	0	2355966..2356205	-	79	148268628	-	SaurJH9_2214	-	hypothetical protein
2182	 32.77	0	2356218..2356754	-	178	148268629	-	SaurJH9_2215	-	hypothetical protein
2183	 35.51	0	2356929..2358491	-	520	148268630	-	SaurJH9_2216	-	choline/carnitine/betaine transporter
2184	 33.73	0	2358799..2359806	-	335	148268631	-	SaurJH9_2217	-	zinc-binding alcohol dehydrogenase
2185	 38.02	+1	2360041..2361042	-	333	148268632	-	SaurJH9_2218	-	alcohol dehydrogenase
2186	 33.79	0	2361320..2362189	-	289	148268633	-	SaurJH9_2219	-	hypothetical protein
2187	 34.75	0	2362455..2363867	-	470	148268634	-	SaurJH9_2220	-	6-phospho-beta-galactosidase
2188	 35.79	0	2363885..2365597	-	570	148268635	-	SaurJH9_2221	-	PTS system, lactose-specific IIC subunit
2189	 36.22	0	2365603..2365914	-	103	148268636	-	SaurJH9_2222	-	PTS system, lactose-specific IIA component
2190	 35.37	0	2365936..2366916	-	326	148268637	-	SaurJH9_2223	-	tagatose 1,6-diphosphate aldolase
2191	 35.16	0	2366920..2367852	-	310	148268638	-	SaurJH9_2224	-	tagatose-6-phosphate kinase
2192	 34.30	0	2367865..2368380	-	171	148268639	-	SaurJH9_2225	-	galactose-6-phosphate isomerase subunit LacB
2193	 36.60	+1	2368396..2368824	-	142	148268640	-	SaurJH9_2226	-	galactose-6-phosphate isomerase subunit LacA
2194	 34.22	0	2369191..2369982	-	263	148268641	-	SaurJH9_2227	-	DeoR family transcriptional regulator
2195	 35.93	0	2370197..2370928	+	243	148268642	-	SaurJH9_2228	-	NAD-dependent deacetylase
2196	 25.98	-2	2371213..2371416	-	67	148268643	-	SaurJH9_2229	-	hypothetical protein
2197	 33.33	0	2371649..2372497	-	282	148268644	-	SaurJH9_2230	-	aldo/keto reductase
2198	 29.26	-1	2372567..2372983	-	138	148268645	-	SaurJH9_2231	-	MerR family transcriptional regulator
2199	 33.17	0	2373391..2375820	+	809	148268646	-	SaurJH9_2232	-	polysaccharide lyase family protein 8
2200	 31.46	0	2375880..2376734	-	284	148268647	-	SaurJH9_2233	-	peptidase M23B
2201	 29.90	0	2376945..2377760	-	271	148268648	-	SaurJH9_2234	-	HAD family hydrolase
2202	 31.46	0	2378055..2378480	+	141	148268649	-	SaurJH9_2235	-	MAP domain-containing protein
2203	 33.19	0	2378864..2379568	-	234	148268650	-	SaurJH9_2236	-	acetolactate decarboxylase
2204	 34.77	0	2379605..2381269	-	554	148268651	-	SaurJH9_2237	-	acetolactate synthase
2205	 27.34	-1	2382519..2383535	-	338	148268652	-	SaurJH9_2238	-	RNA-directed DNA polymerase (Reverse transcriptase)
2206	 23.02	-2	2383780..2384409	-	209	148268653	-	SaurJH9_2239	-	hypothetical protein
2207	 21.76	-2	2384409..2385056	-	215	148268654	-	SaurJH9_2240	-	hypothetical protein
2208	 29.49	-1	2387011..2387166	-	51	148268655	-	SaurJH9_2242	-	hypothetical protein
2209	 25.74	-2	2388502..2389449	+	315	148268656	-	SaurJH9_2243	-	hypothetical protein
2210	 40.71	+2	2389624..2390016	-	130	148268657	rpsI	SaurJH9_2244	-	30S ribosomal protein S9
2211	 36.30	0	2390036..2390473	-	145	148268658	rplM	SaurJH9_2245	-	50S ribosomal protein L13
2212	 35.45	0	2390713..2391516	-	267	148268659	truA	SaurJH9_2246	-	tRNA pseudouridine synthase A
2213	 31.72	0	2391521..2392327	-	268	148268660	-	SaurJH9_2247	-	cobalt transport protein
2214	 34.26	0	2392317..2393177	-	286	148268661	-	SaurJH9_2248	-	cobalt transporter ATP-binding subunit
2215	 34.81	0	2393174..2393983	-	269	148268662	-	SaurJH9_2249	-	cobalt transporter ATP-binding subunit
2216	 37.40	+1	2394521..2394889	-	122	148268663	rplQ	SaurJH9_2250	-	50S ribosomal protein L17
2217	 33.76	0	2394906..2395850	-	314	148268664	-	SaurJH9_2251	-	DNA-directed RNA polymerase subunit alpha
2218	 40.00	+2	2395925..2396314	-	129	148268665	-	SaurJH9_2252	-	30S ribosomal protein S11
2219	 39.07	+1	2396338..2396703	-	121	148268666	rpsM	SaurJH9_2253	-	30S ribosomal protein S13
2220	 28.95	-1	2396726..2396839	-	37	148268667	rpmJ	SaurJH9_2254	-	50S ribosomal protein L36
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.