IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1991	 35.77	0	2150061..2150798	-	245	148268438	-	SaurJH9_2021	-	peptidase S14, ClpP
1992	 32.13	0	2150782..2151945	-	387	148268439	-	SaurJH9_2022	-	HK97 family phage portal protein
1993	 32.73	0	2151961..2153622	-	553	148268440	-	SaurJH9_2023	-	phage terminase
1994	 33.85	0	2153619..2154008	-	129	148268441	-	SaurJH9_2024	-	hypothetical protein
1995	 30.67	0	2154094..2154393	-	99	148268442	-	SaurJH9_2025	-	HNH endonuclease
1996	 34.53	0	2154625..2155041	-	138	148268443	-	SaurJH9_2026	-	RinA family phage transcriptional regulator
1997	 29.41	-1	2155069..2155272	-	67	148268444	-	SaurJH9_2027	-	hypothetical protein
1998	 36.67	+1	2155269..2155418	-	49	148268445	-	SaurJH9_2028	-	transcriptional activator RinB
1999	 37.68	+1	2155415..2155621	-	68	148268446	-	SaurJH9_2029	-	hypothetical protein
2000	 27.85	-1	2155618..2155854	-	78	148268447	-	SaurJH9_2030	-	hypothetical protein
2001	 31.84	0	2155900..2156436	-	178	148268448	-	SaurJH9_2031	-	dUTPase
2002	 36.14	0	2156433..2156681	-	82	148268449	-	SaurJH9_2032	-	hypothetical protein
2003	 37.86	+1	2156693..2156935	-	80	148268450	-	SaurJH9_2033	-	phage conserved Open Reading Frame 51
2004	 38.37	+1	2156938..2157195	-	85	148268451	-	SaurJH9_2034	-	hypothetical protein
2005	 37.90	+1	2157195..2157566	-	123	148268452	-	SaurJH9_2035	-	PVL ORF-50 family protein
2006	 36.30	0	2157579..2157983	-	134	148268453	-	SaurJH9_2036	-	endodeoxyribonuclease RusA
2007	 29.68	-1	2157992..2158210	-	72	148268454	-	SaurJH9_2037	-	hypothetical protein
2008	 33.67	0	2158217..2159110	-	297	148268455	-	SaurJH9_2038	-	primosome, DnaD subunit
2009	 35.88	0	2159140..2159610	-	156	148268456	-	SaurJH9_2039	-	single-strand binding protein
2010	 34.64	0	2160309..2161229	-	306	148268457	-	SaurJH9_2041	-	RecT protein
2011	 30.61	0	2161231..2163174	-	647	148268458	-	SaurJH9_2042	-	hypothetical protein
2012	 32.58	0	2163183..2163446	-	87	148268459	-	SaurJH9_2043	-	hypothetical protein
2013	 32.57	0	2163455..2163715	-	86	148268460	-	SaurJH9_2044	-	hypothetical protein
2014	 31.68	0	2163720..2164022	-	100	148268461	-	SaurJH9_2045	-	hypothetical protein
2015	 34.57	0	2164117..2164278	-	53	148268462	-	SaurJH9_2046	-	hypothetical protein
2016	 34.26	0	2164275..2164598	-	107	148268463	-	SaurJH9_2047	-	hypothetical protein
2017	 29.13	-1	2164653..2165033	+	126	148268464	-	SaurJH9_2048	-	hypothetical protein
2018	 31.31	0	2165020..2165217	-	65	148268465	-	SaurJH9_2049	-	hypothetical protein
2019	 34.27	0	2165233..2165982	-	249	148268466	-	SaurJH9_2050	-	phage antirepressor protein
2020	 32.86	0	2166039..2166248	+	69	148268467	-	SaurJH9_2051	-	hypothetical protein
2021	 31.31	0	2166396..2166839	-	147	148268468	-	SaurJH9_2052	-	hypothetical protein
2022	 31.28	0	2166852..2167094	-	80	148268469	-	SaurJH9_2053	-	hypothetical protein
2023	 31.80	0	2167258..2167974	+	238	148268470	-	SaurJH9_2054	-	putative phage repressor
2024	 28.77	-1	2167986..2168840	+	284	148268471	-	SaurJH9_2055	-	HIRAN
2025	 31.97	0	2168914..2169060	+	48	148268472	-	SaurJH9_2056	-	hypothetical protein
2026	 31.72	0	2169057..2169242	+	61	148268473	-	SaurJH9_2057	-	hypothetical protein
2027	 26.78	-1	2169313..2169495	+	60	148268474	-	SaurJH9_2058	-	hypothetical protein
2028	 24.53	-2	2169550..2170287	+	245	148268475	-	SaurJH9_2059	-	hypothetical protein
2029	 30.83	0	2170478..2171515	+	345	148268476	-	SaurJH9_2060	-	phage integrase family protein
2030	 33.58	0	2171572..2172396	+	274	148268477	-	SaurJH9_2061	-	phospholipase C
2031	 30.38	0	2172634..2173650	-	338	148268478	-	SaurJH9_2062	-	beta-channel forming cytolysin
2032	 29.83	0	2173672..2174727	-	351	148268479	-	SaurJH9_2063	-	Combined leucocidin/ASH4 hemolysin
2033	 33.91	0	2175163..2176386	+	407	148268480	-	SaurJH9_2064	-	succinyl-diaminopimelate desuccinylase
2034	 28.67	-1	2176830..2178137	+	435	148268481	-	SaurJH9_2065	-	H(+)-transporting two-sector ATPase
2035	 37.35	+1	2178677..2180293	-	538	148268482	groEL	SaurJH9_2066	-	chaperonin GroEL
2036	 34.39	0	2180369..2180653	-	94	148268483	groES	SaurJH9_2067	-	co-chaperonin GroES
2037	 29.03	-1	2180828..2181571	+	247	148268484	-	SaurJH9_2068	-	hypothetical protein
2038	 36.27	0	2181596..2182855	-	419	148268485	-	SaurJH9_2069	-	hypothetical protein
2039	 31.26	0	2183052..2183678	+	208	148268486	-	SaurJH9_2070	-	hypothetical protein
2040	 32.06	0	2184039..2184824	+	261	148268487	-	SaurJH9_2071	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
2041	 30.86	0	2185424..2185504	-	26	148268488	-	SaurJH9_2072	-	delta lysin
2042	 25.71	-2	2185794..2186357	+	187	148268489	-	SaurJH9_2073	-	accessory gene regulator B
2043	 31.94	0	2186360..2186503	+	47	148268490	-	SaurJH9_2074	-	AgrD family protein
2044	 31.10	0	2187834..2188550	+	238	148268491	-	SaurJH9_2076	-	LytTR family two component transcriptional regulator
2045	 34.90	0	2188919..2189878	-	319	148268492	-	SaurJH9_2077	-	ribokinase-like domain-containing protein
2046	 33.54	0	2189875..2191359	-	494	148268493	-	SaurJH9_2078	-	sucrose-6-phosphate hydrolase
2047	 32.60	0	2191508..2192458	-	316	148268494	-	SaurJH9_2079	-	sucrose operon repressor
2048	 32.85	0	2192641..2193891	-	416	148268495	-	SaurJH9_2080	-	ammonium transporter
2049	 34.67	0	2194099..2194323	-	74	148268496	-	SaurJH9_2081	-	hypothetical protein
2050	 36.30	0	2194383..2195462	-	359	148268497	-	SaurJH9_2082	-	hypothetical protein
2051	 33.96	0	2195766..2196401	-	211	148268498	-	SaurJH9_2083	-	redox-sensing transcriptional repressor Rex
2052	 32.09	0	2196654..2198582	+	642	148268499	-	SaurJH9_2084	-	ABC transporter related
2053	 30.42	0	2198944..2200554	+	536	148268500	-	SaurJH9_2085	-	DNA mismatch repair protein MutS domain-containing protein
2054	 37.52	+1	2200869..2201894	-	341	148268501	-	SaurJH9_2086	-	O-sialoglycoprotein endopeptidase
2055	 32.04	0	2201887..2202351	-	154	148268502	-	SaurJH9_2087	-	ribosomal-protein-alanine acetyltransferase
2056	 34.99	0	2202324..2202986	-	220	148268503	-	SaurJH9_2088	-	hypothetical protein
2057	 30.91	0	2202967..2203461	-	164	148268504	-	SaurJH9_2089	-	hypothetical protein
2058	 40.50	+2	2203939..2205627	+	562	148268505	-	SaurJH9_2090	-	dihydroxy-acid dehydratase
2059	 36.55	+1	2205655..2207424	+	589	148268506	-	SaurJH9_2091	-	acetolactate synthase large subunit
2060	 30.98	0	2207424..2207678	+	84	148268507	-	SaurJH9_2092	-	acetolactate synthase 1 regulatory subunit
2061	 35.22	0	2207815..2208819	+	334	148268508	-	SaurJH9_2093	-	ketol-acid reductoisomerase
2062	 36.14	0	2208849..2210378	+	509	148268509	-	SaurJH9_2094	-	2-isopropylmalate synthase
2063	 35.82	0	2210381..2211427	+	348	148268510	-	SaurJH9_2095	-	3-isopropylmalate dehydrogenase
2064	 38.00	+1	2211441..2212811	+	456	148268511	-	SaurJH9_2096	-	isopropylmalate isomerase large subunit
2065	 33.68	0	2212812..2213384	+	190	148268512	-	SaurJH9_2097	-	isopropylmalate isomerase small subunit
2066	 31.76	0	2213399..2214667	+	422	148268513	-	SaurJH9_2098	-	threonine dehydratase
2067	 33.77	0	2221465..2221920	-	151	148268514	-	SaurJH9_2099	-	hypothetical protein
2068	 33.57	0	2221913..2224063	-	716	148268515	-	SaurJH9_2100	-	RNA-binding S1 domain-containing protein
2069	 34.89	0	2224497..2225267	-	256	148268516	-	SaurJH9_2101	-	RNA polymerase sigma factor SigB
2070	 32.71	0	2225242..2225721	-	159	148268517	-	SaurJH9_2102	-	serine-protein kinase RsbW
2071	 31.80	0	2225723..2226049	-	108	148268518	-	SaurJH9_2103	-	anti-sigma-factor antagonist
2072	 31.34	0	2226168..2227169	-	333	148268519	-	SaurJH9_2104	-	stage II sporulation E family protein
2073	 33.06	0	2227519..2227881	-	120	148268520	-	SaurJH9_2105	-	transcriptional modulator of MazE/toxin, MazF
2074	 33.33	0	2227878..2228048	-	56	148268521	-	SaurJH9_2106	-	hypothetical protein
2075	 36.03	0	2228133..2229281	-	382	148268522	-	SaurJH9_2107	-	alanine racemase
2076	 35.56	0	2229347..2229706	-	119	148268523	-	SaurJH9_2108	-	holo-acyl-carrier-protein synthase
2077	 33.54	0	2229710..2230201	-	163	148268524	-	SaurJH9_2109	-	membrane-flanked domain-containing protein
2078	 31.63	0	2230188..2231771	-	527	148268525	-	SaurJH9_2110	-	membrane-flanked domain-containing protein
2079	 30.21	0	2231764..2232243	-	159	148268526	-	SaurJH9_2111	-	hypothetical protein
2080	 36.01	0	2232451..2233011	-	186	148268527	-	SaurJH9_2112	-	potassium-transporting ATPase, C subunit
2081	 34.86	0	2233031..2235058	-	675	148268528	-	SaurJH9_2113	-	K+-transporting ATPase, B subunit
2082	 32.56	0	2235077..2236753	-	558	148268529	-	SaurJH9_2114	-	potassium-transporting ATPase subunit A
2083	 31.90	0	2237025..2239682	+	885	148268530	-	SaurJH9_2115	-	osmosensitive K+ channel signal transduction histidine kinase
2084	 32.76	0	2239682..2240377	+	231	148268531	-	SaurJH9_2116	-	two component transcriptional regulator
2085	 30.91	0	2240761..2242080	-	439	148268532	-	SaurJH9_2117	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
2086	 36.55	+1	2242249..2243769	-	506	148268533	-	SaurJH9_2118	-	DEAD/DEAH box helicase domain-containing protein
2087	 33.41	0	2244286..2245644	-	452	148268534	-	SaurJH9_2119	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
2088	 33.80	0	2245659..2246729	-	356	148268535	ddl	SaurJH9_2120	-	D-alanyl-alanine synthetase A
2089	 33.00	0	2247047..2248249	+	400	148268536	-	SaurJH9_2121	-	cell cycle protein
2090	 26.81	-1	2248513..2248650	-	45	148268537	-	SaurJH9_2122	-	hypothetical protein
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.