IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1956	 31.74	0	2119932..2120495	+	187	148268403	-	SaurJH9_1986	-	hypothetical protein
1957	 27.13	-1	2120561..2121301	-	246	148268404	-	SaurJH9_1987	-	hypothetical protein
1958	 28.87	-1	2121301..2122173	-	290	148268405	-	SaurJH9_1988	-	ABC transporter related
1959	 26.87	-1	2122170..2122850	-	226	148268406	-	SaurJH9_1989	-	hypothetical protein
1960	 31.10	0	2122851..2123747	-	298	148268407	-	SaurJH9_1990	-	ABC transporter related
1961	 32.02	0	2123744..2124124	-	126	148268408	-	SaurJH9_1991	-	regulatory protein GntR, HTH
1962	 23.73	-2	2124382..2124558	-	58	148268409	-	SaurJH9_1992	-	hypothetical protein
1963	 33.33	0	2124801..2124899	-	32	148268410	-	SaurJH9_1993	-	hypothetical protein
1964	 33.49	0	2125099..2126385	+	428	148268411	-	SaurJH9_1994	-	hypothetical protein
1965	 27.15	-1	2126664..2126954	-	96	148268412	-	SaurJH9_1995	-	MAP domain-containing protein
1966	 27.53	-1	2126969..2128399	-	476	148268413	-	SaurJH9_1996	-	MAP domain-containing protein
1967	 30.92	0	2128779..2128985	+	68	148268414	-	SaurJH9_1997	-	hypothetical protein
1968	 24.92	-2	2129560..2129868	+	102	148268415	-	SaurJH9_1998	-	hypothetical protein
1969	 29.06	-1	2130160..2130510	-	116	148268416	-	SaurJH9_1999	-	hypothetical protein
1970	 28.22	-1	2131195..2131644	+	149	148268417	-	SaurJH9_2000	-	chemotaxis-inhibiting protein CHIPS
1971	 37.04	+1	2131739..2132035	-	98	148268418	-	SaurJH9_2001	-	SH3 type 3 domain-containing protein
1972	 32.32	0	2132724..2133215	-	163	148268419	-	SaurJH9_2002	-	kinase
1973	 35.19	0	2133406..2134161	-	251	148268420	-	SaurJH9_2003	-	CHAP domain-containing protein
1974	 32.55	0	2134173..2134427	-	84	148268421	-	SaurJH9_2004	-	phage phi LC3 family holin
1975	 33.33	0	2134965..2135261	-	98	148268422	-	SaurJH9_2005	-	hypothetical protein
1976	 30.90	0	2135319..2135606	-	95	148268423	-	SaurJH9_2006	-	hypothetical protein
1977	 30.72	0	2135653..2135805	-	50	148268424	-	SaurJH9_2007	-	hypothetical protein
1978	 35.39	0	2135795..2139580	-	1261	148268425	-	SaurJH9_2008	-	phage minor structural protein
1979	 34.88	0	2139596..2141080	-	494	148268426	-	SaurJH9_2009	-	hypothetical protein
1980	 36.75	+1	2141077..2145609	-	1510	148268427	-	SaurJH9_2010	-	TP901 family phage tail tape measure protein
1981	 28.40	-1	2145666..2145827	-	53	148268428	-	SaurJH9_2011	-	hypothetical protein
1982	 33.05	0	2145854..2146204	-	116	148268429	-	SaurJH9_2012	-	hypothetical protein
1983	 34.75	0	2146254..2146394	-	46	148268430	-	SaurJH9_2013	-	hypothetical protein
1984	 36.28	0	2146520..2147164	-	214	148268431	-	SaurJH9_2014	-	phi13 family phage major tail protein
1985	 29.66	-1	2147165..2147572	-	135	148268432	-	SaurJH9_2015	-	hypothetical protein
1986	 34.81	0	2147569..2147973	-	134	148268433	-	SaurJH9_2016	-	hypothetical protein
1987	 31.40	0	2147970..2148332	-	120	148268434	-	SaurJH9_2017	-	phage head-tail adaptor, putative
1988	 31.23	0	2148316..2148600	-	94	148268435	-	SaurJH9_2018	-	hypothetical protein
1989	 32.18	0	2148613..2148873	-	86	148268436	-	SaurJH9_2019	-	hypothetical protein
1990	 34.82	0	2148893..2150038	-	381	148268437	-	SaurJH9_2020	-	hypothetical protein
1991	 35.77	0	2150061..2150798	-	245	148268438	-	SaurJH9_2021	-	peptidase S14, ClpP
1992	 32.13	0	2150782..2151945	-	387	148268439	-	SaurJH9_2022	-	HK97 family phage portal protein
1993	 32.73	0	2151961..2153622	-	553	148268440	-	SaurJH9_2023	-	phage terminase
1994	 33.85	0	2153619..2154008	-	129	148268441	-	SaurJH9_2024	-	hypothetical protein
1995	 30.67	0	2154094..2154393	-	99	148268442	-	SaurJH9_2025	-	HNH endonuclease
1996	 34.53	0	2154625..2155041	-	138	148268443	-	SaurJH9_2026	-	RinA family phage transcriptional regulator
1997	 29.41	-1	2155069..2155272	-	67	148268444	-	SaurJH9_2027	-	hypothetical protein
1998	 36.67	+1	2155269..2155418	-	49	148268445	-	SaurJH9_2028	-	transcriptional activator RinB
1999	 37.68	+1	2155415..2155621	-	68	148268446	-	SaurJH9_2029	-	hypothetical protein
2000	 27.85	-1	2155618..2155854	-	78	148268447	-	SaurJH9_2030	-	hypothetical protein
2001	 31.84	0	2155900..2156436	-	178	148268448	-	SaurJH9_2031	-	dUTPase
2002	 36.14	0	2156433..2156681	-	82	148268449	-	SaurJH9_2032	-	hypothetical protein
2003	 37.86	+1	2156693..2156935	-	80	148268450	-	SaurJH9_2033	-	phage conserved Open Reading Frame 51
2004	 38.37	+1	2156938..2157195	-	85	148268451	-	SaurJH9_2034	-	hypothetical protein
2005	 37.90	+1	2157195..2157566	-	123	148268452	-	SaurJH9_2035	-	PVL ORF-50 family protein
2006	 36.30	0	2157579..2157983	-	134	148268453	-	SaurJH9_2036	-	endodeoxyribonuclease RusA
2007	 29.68	-1	2157992..2158210	-	72	148268454	-	SaurJH9_2037	-	hypothetical protein
2008	 33.67	0	2158217..2159110	-	297	148268455	-	SaurJH9_2038	-	primosome, DnaD subunit
2009	 35.88	0	2159140..2159610	-	156	148268456	-	SaurJH9_2039	-	single-strand binding protein
2010	 34.64	0	2160309..2161229	-	306	148268457	-	SaurJH9_2041	-	RecT protein
2011	 30.61	0	2161231..2163174	-	647	148268458	-	SaurJH9_2042	-	hypothetical protein
2012	 32.58	0	2163183..2163446	-	87	148268459	-	SaurJH9_2043	-	hypothetical protein
2013	 32.57	0	2163455..2163715	-	86	148268460	-	SaurJH9_2044	-	hypothetical protein
2014	 31.68	0	2163720..2164022	-	100	148268461	-	SaurJH9_2045	-	hypothetical protein
2015	 34.57	0	2164117..2164278	-	53	148268462	-	SaurJH9_2046	-	hypothetical protein
2016	 34.26	0	2164275..2164598	-	107	148268463	-	SaurJH9_2047	-	hypothetical protein
2017	 29.13	-1	2164653..2165033	+	126	148268464	-	SaurJH9_2048	-	hypothetical protein
2018	 31.31	0	2165020..2165217	-	65	148268465	-	SaurJH9_2049	-	hypothetical protein
2019	 34.27	0	2165233..2165982	-	249	148268466	-	SaurJH9_2050	-	phage antirepressor protein
2020	 32.86	0	2166039..2166248	+	69	148268467	-	SaurJH9_2051	-	hypothetical protein
2021	 31.31	0	2166396..2166839	-	147	148268468	-	SaurJH9_2052	-	hypothetical protein
2022	 31.28	0	2166852..2167094	-	80	148268469	-	SaurJH9_2053	-	hypothetical protein
2023	 31.80	0	2167258..2167974	+	238	148268470	-	SaurJH9_2054	-	putative phage repressor
2024	 28.77	-1	2167986..2168840	+	284	148268471	-	SaurJH9_2055	-	HIRAN
2025	 31.97	0	2168914..2169060	+	48	148268472	-	SaurJH9_2056	-	hypothetical protein
2026	 31.72	0	2169057..2169242	+	61	148268473	-	SaurJH9_2057	-	hypothetical protein
2027	 26.78	-1	2169313..2169495	+	60	148268474	-	SaurJH9_2058	-	hypothetical protein
2028	 24.53	-2	2169550..2170287	+	245	148268475	-	SaurJH9_2059	-	hypothetical protein
2029	 30.83	0	2170478..2171515	+	345	148268476	-	SaurJH9_2060	-	phage integrase family protein
2030	 33.58	0	2171572..2172396	+	274	148268477	-	SaurJH9_2061	-	phospholipase C
2031	 30.38	0	2172634..2173650	-	338	148268478	-	SaurJH9_2062	-	beta-channel forming cytolysin
2032	 29.83	0	2173672..2174727	-	351	148268479	-	SaurJH9_2063	-	Combined leucocidin/ASH4 hemolysin
2033	 33.91	0	2175163..2176386	+	407	148268480	-	SaurJH9_2064	-	succinyl-diaminopimelate desuccinylase
2034	 28.67	-1	2176830..2178137	+	435	148268481	-	SaurJH9_2065	-	H(+)-transporting two-sector ATPase
2035	 37.35	+1	2178677..2180293	-	538	148268482	groEL	SaurJH9_2066	-	chaperonin GroEL
2036	 34.39	0	2180369..2180653	-	94	148268483	groES	SaurJH9_2067	-	co-chaperonin GroES
2037	 29.03	-1	2180828..2181571	+	247	148268484	-	SaurJH9_2068	-	hypothetical protein
2038	 36.27	0	2181596..2182855	-	419	148268485	-	SaurJH9_2069	-	hypothetical protein
2039	 31.26	0	2183052..2183678	+	208	148268486	-	SaurJH9_2070	-	hypothetical protein
2040	 32.06	0	2184039..2184824	+	261	148268487	-	SaurJH9_2071	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
2041	 30.86	0	2185424..2185504	-	26	148268488	-	SaurJH9_2072	-	delta lysin
2042	 25.71	-2	2185794..2186357	+	187	148268489	-	SaurJH9_2073	-	accessory gene regulator B
2043	 31.94	0	2186360..2186503	+	47	148268490	-	SaurJH9_2074	-	AgrD family protein
2044	 31.10	0	2187834..2188550	+	238	148268491	-	SaurJH9_2076	-	LytTR family two component transcriptional regulator
2045	 34.90	0	2188919..2189878	-	319	148268492	-	SaurJH9_2077	-	ribokinase-like domain-containing protein
2046	 33.54	0	2189875..2191359	-	494	148268493	-	SaurJH9_2078	-	sucrose-6-phosphate hydrolase
2047	 32.60	0	2191508..2192458	-	316	148268494	-	SaurJH9_2079	-	sucrose operon repressor
2048	 32.85	0	2192641..2193891	-	416	148268495	-	SaurJH9_2080	-	ammonium transporter
2049	 34.67	0	2194099..2194323	-	74	148268496	-	SaurJH9_2081	-	hypothetical protein
2050	 36.30	0	2194383..2195462	-	359	148268497	-	SaurJH9_2082	-	hypothetical protein
2051	 33.96	0	2195766..2196401	-	211	148268498	-	SaurJH9_2083	-	redox-sensing transcriptional repressor Rex
2052	 32.09	0	2196654..2198582	+	642	148268499	-	SaurJH9_2084	-	ABC transporter related
2053	 30.42	0	2198944..2200554	+	536	148268500	-	SaurJH9_2085	-	DNA mismatch repair protein MutS domain-containing protein
2054	 37.52	+1	2200869..2201894	-	341	148268501	-	SaurJH9_2086	-	O-sialoglycoprotein endopeptidase
2055	 32.04	0	2201887..2202351	-	154	148268502	-	SaurJH9_2087	-	ribosomal-protein-alanine acetyltransferase
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.