IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1896	 30.30	0	2059364..2060881	-	505	148268343	-	SaurJH9_1925	-	ABC-type polysaccharide/polyol phosphate transport system ATPase component-like protein
1897	 30.79	0	2060896..2061210	-	104	148268344	-	SaurJH9_1926	-	hypothetical protein
1898	 28.69	-1	2061188..2062006	-	272	148268345	recX	SaurJH9_1927	-	recombination regulator RecX
1899	 30.86	0	2062266..2063075	-	269	148268346	-	SaurJH9_1928	-	glycosyltransferase
1900	 35.08	0	2063415..2063930	-	171	148268347	-	SaurJH9_1929	-	PfpI family intracellular peptidase
1901	 30.86	0	2064061..2064222	-	53	148268348	-	SaurJH9_1930	-	hypothetical protein
1902	 33.59	0	2064446..2065597	+	383	148268349	-	SaurJH9_1931	-	YfkB-like domain-containing protein
1903	 35.97	0	2065857..2066387	-	176	148268350	-	SaurJH9_1932	-	hypothetical protein
1904	 33.65	0	2066477..2067724	-	415	148268351	-	SaurJH9_1933	-	peptidase M29, aminopeptidase II
1905	 31.34	0	2067736..2067936	-	66	148268352	-	SaurJH9_1934	-	hypothetical protein
1906	 34.19	0	2068083..2068547	+	154	148268353	-	SaurJH9_1935	-	protein tyrosine phosphatase
1907	 32.97	0	2068554..2068829	+	91	148268354	-	SaurJH9_1936	-	hypothetical protein
1908	 32.35	0	2069107..2070324	+	405	148268355	-	SaurJH9_1937	-	putative ribonuclease BN
1909	 33.97	0	2070437..2071066	-	209	148268356	-	SaurJH9_1938	-	two component LuxR family transcriptional regulator
1910	 31.90	0	2071056..2072099	-	347	148268357	-	SaurJH9_1939	-	integral membrane sensor signal transduction histidine kinase
1911	 30.20	0	2072096..2072797	-	233	148268358	-	SaurJH9_1940	-	hypothetical protein
1912	 26.10	-2	2072812..2073198	-	128	148268359	-	SaurJH9_1941	-	hypothetical protein
1913	 35.70	0	2073415..2074173	-	252	148268360	-	SaurJH9_1942	-	methionine aminopeptidase
1914	 32.22	0	2074645..2075631	+	328	148268361	-	SaurJH9_1943	-	membrane protein-like protein
1915	 26.09	-2	2076062..2076475	-	137	148268362	-	SaurJH9_1944	-	hypothetical protein
1916	 30.87	0	2076700..2077431	-	243	148268363	-	SaurJH9_1945	-	glutamine amidotransferase
1917	 34.32	0	2077433..2078746	-	437	148268364	-	SaurJH9_1946	-	hypothetical protein
1918	 34.53	0	2079038..2079538	+	166	148268365	-	SaurJH9_1947	-	Ferritin, Dps family protein
1919	 31.89	0	2079928..2080482	+	184	148268366	-	SaurJH9_1948	-	exonuclease, RNase T and DNA polymerase III
1920	 34.45	0	2080550..2081620	-	356	148268367	-	SaurJH9_1949	-	DNA-directed DNA polymerase
1921	 28.81	-1	2081867..2082397	-	176	148268368	-	SaurJH9_1950	-	hypothetical protein
1922	 32.97	0	2082567..2083928	-	453	148268369	-	SaurJH9_1951	-	RNA methyltransferase
1923	 33.76	0	2084009..2084956	-	315	148268370	-	SaurJH9_1952	-	putative lipid kinase
1924	 23.81	-2	2085538..2085684	-	48	148268371	-	SaurJH9_1953	-	hypothetical protein
1925	 34.87	0	2085724..2087151	-	475	148268372	gatB	SaurJH9_1954	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1926	 34.16	0	2087164..2088621	-	485	148268373	-	SaurJH9_1955	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
1927	 35.97	0	2088623..2088925	-	100	148268374	gatC	SaurJH9_1956	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
1928	 35.93	0	2089292..2090830	+	512	148268375	-	SaurJH9_1957	-	high affinity proline permease
1929	 30.67	0	2090919..2092118	-	399	148268376	-	SaurJH9_1958	-	CamS sex pheromone cAM373 family protein
1930	 33.98	0	2092131..2094134	-	667	148268377	-	SaurJH9_1959	-	DNA ligase, NAD-dependent
1931	 34.34	0	2094138..2096330	-	730	148268378	-	SaurJH9_1960	-	ATP-dependent DNA helicase PcrA
1932	 33.33	0	2096327..2097019	-	230	148268379	-	SaurJH9_1961	-	geranylgeranylglyceryl phosphate synthase-like protein
1933	 32.01	0	2097191..2097493	-	100	148268380	-	SaurJH9_1962	-	hypothetical protein
1934	 35.49	0	2097602..2098897	-	431	148268381	-	SaurJH9_1963	-	adenylosuccinate lyase
1935	 31.36	0	2099757..2100923	+	388	148268382	-	SaurJH9_1964	-	hypothetical protein
1936	 25.99	-2	2100954..2101280	+	108	148268383	-	SaurJH9_1965	-	hypothetical protein
1937	 33.91	0	2101572..2101745	-	57	148268384	-	SaurJH9_1966	-	hypothetical protein
1938	 32.34	0	2101726..2102328	-	200	148268385	-	SaurJH9_1967	-	hypothetical protein
1939	 34.06	0	2102599..2103420	-	273	148268386	nadE	SaurJH9_1968	-	NAD synthetase
1940	 33.20	0	2103413..2104882	-	489	148268387	-	SaurJH9_1969	-	nicotinate phosphoribosyltransferase
1941	 33.52	0	2105066..2106142	+	358	148268388	-	SaurJH9_1970	-	nitric-oxide synthase
1942	 32.96	0	2106162..2106956	+	264	148268389	-	SaurJH9_1971	-	prephenate dehydratase
1943	 34.36	0	2107146..2108708	-	520	148268390	-	SaurJH9_1972	-	anion transporter
1944	 32.88	0	2108913..2110010	-	365	148268391	-	SaurJH9_1973	-	parallel beta-helix repeat-containing protein
1945	 34.40	0	2110379..2110939	+	186	148268392	-	SaurJH9_1974	-	isochorismatase hydrolase
1946	 34.09	0	2110992..2111921	+	309	148268393	-	SaurJH9_1975	-	putative manganese-dependent inorganic pyrophosphatase
1947	 25.29	-2	2112114..2112287	-	57	148268394	-	SaurJH9_1976	-	hypothetical protein
1948	 33.33	0	2112339..2113718	+	459	148268395	-	SaurJH9_1977	-	aldehyde dehydrogenase
1949	 32.85	0	2113838..2114866	-	342	148268396	-	SaurJH9_1978	-	hypothetical protein
1950	 33.33	0	2115136..2115537	+	133	148268397	-	SaurJH9_1979	-	hypothetical protein
1951	 24.14	-2	2116110..2116283	-	57	148268398	-	SaurJH9_1981	-	hypothetical protein
1952	 33.33	0	2116662..2117774	+	370	148268399	-	SaurJH9_1982	-	hypothetical protein
1953	 29.30	-1	2117831..2118673	-	280	148268400	-	SaurJH9_1983	-	hypothetical protein
1954	 28.67	-1	2118670..2119227	-	185	148268401	-	SaurJH9_1984	-	hypothetical protein
1955	 27.81	-1	2119287..2119811	-	174	148268402	-	SaurJH9_1985	-	hypothetical protein
1956	 31.74	0	2119932..2120495	+	187	148268403	-	SaurJH9_1986	-	hypothetical protein
1957	 27.13	-1	2120561..2121301	-	246	148268404	-	SaurJH9_1987	-	hypothetical protein
1958	 28.87	-1	2121301..2122173	-	290	148268405	-	SaurJH9_1988	-	ABC transporter related
1959	 26.87	-1	2122170..2122850	-	226	148268406	-	SaurJH9_1989	-	hypothetical protein
1960	 31.10	0	2122851..2123747	-	298	148268407	-	SaurJH9_1990	-	ABC transporter related
1961	 32.02	0	2123744..2124124	-	126	148268408	-	SaurJH9_1991	-	regulatory protein GntR, HTH
1962	 23.73	-2	2124382..2124558	-	58	148268409	-	SaurJH9_1992	-	hypothetical protein
1963	 33.33	0	2124801..2124899	-	32	148268410	-	SaurJH9_1993	-	hypothetical protein
1964	 33.49	0	2125099..2126385	+	428	148268411	-	SaurJH9_1994	-	hypothetical protein
1965	 27.15	-1	2126664..2126954	-	96	148268412	-	SaurJH9_1995	-	MAP domain-containing protein
1966	 27.53	-1	2126969..2128399	-	476	148268413	-	SaurJH9_1996	-	MAP domain-containing protein
1967	 30.92	0	2128779..2128985	+	68	148268414	-	SaurJH9_1997	-	hypothetical protein
1968	 24.92	-2	2129560..2129868	+	102	148268415	-	SaurJH9_1998	-	hypothetical protein
1969	 29.06	-1	2130160..2130510	-	116	148268416	-	SaurJH9_1999	-	hypothetical protein
1970	 28.22	-1	2131195..2131644	+	149	148268417	-	SaurJH9_2000	-	chemotaxis-inhibiting protein CHIPS
1971	 37.04	+1	2131739..2132035	-	98	148268418	-	SaurJH9_2001	-	SH3 type 3 domain-containing protein
1972	 32.32	0	2132724..2133215	-	163	148268419	-	SaurJH9_2002	-	kinase
1973	 35.19	0	2133406..2134161	-	251	148268420	-	SaurJH9_2003	-	CHAP domain-containing protein
1974	 32.55	0	2134173..2134427	-	84	148268421	-	SaurJH9_2004	-	phage phi LC3 family holin
1975	 33.33	0	2134965..2135261	-	98	148268422	-	SaurJH9_2005	-	hypothetical protein
1976	 30.90	0	2135319..2135606	-	95	148268423	-	SaurJH9_2006	-	hypothetical protein
1977	 30.72	0	2135653..2135805	-	50	148268424	-	SaurJH9_2007	-	hypothetical protein
1978	 35.39	0	2135795..2139580	-	1261	148268425	-	SaurJH9_2008	-	phage minor structural protein
1979	 34.88	0	2139596..2141080	-	494	148268426	-	SaurJH9_2009	-	hypothetical protein
1980	 36.75	+1	2141077..2145609	-	1510	148268427	-	SaurJH9_2010	-	TP901 family phage tail tape measure protein
1981	 28.40	-1	2145666..2145827	-	53	148268428	-	SaurJH9_2011	-	hypothetical protein
1982	 33.05	0	2145854..2146204	-	116	148268429	-	SaurJH9_2012	-	hypothetical protein
1983	 34.75	0	2146254..2146394	-	46	148268430	-	SaurJH9_2013	-	hypothetical protein
1984	 36.28	0	2146520..2147164	-	214	148268431	-	SaurJH9_2014	-	phi13 family phage major tail protein
1985	 29.66	-1	2147165..2147572	-	135	148268432	-	SaurJH9_2015	-	hypothetical protein
1986	 34.81	0	2147569..2147973	-	134	148268433	-	SaurJH9_2016	-	hypothetical protein
1987	 31.40	0	2147970..2148332	-	120	148268434	-	SaurJH9_2017	-	phage head-tail adaptor, putative
1988	 31.23	0	2148316..2148600	-	94	148268435	-	SaurJH9_2018	-	hypothetical protein
1989	 32.18	0	2148613..2148873	-	86	148268436	-	SaurJH9_2019	-	hypothetical protein
1990	 34.82	0	2148893..2150038	-	381	148268437	-	SaurJH9_2020	-	hypothetical protein
1991	 35.77	0	2150061..2150798	-	245	148268438	-	SaurJH9_2021	-	peptidase S14, ClpP
1992	 32.13	0	2150782..2151945	-	387	148268439	-	SaurJH9_2022	-	HK97 family phage portal protein
1993	 32.73	0	2151961..2153622	-	553	148268440	-	SaurJH9_2023	-	phage terminase
1994	 33.85	0	2153619..2154008	-	129	148268441	-	SaurJH9_2024	-	hypothetical protein
1995	 30.67	0	2154094..2154393	-	99	148268442	-	SaurJH9_2025	-	HNH endonuclease
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.