IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1874	 34.14	0	2026736..2027848	-	370	148268321	-	SaurJH9_1903	-	GAF sensor signal transduction histidine kinase
1875	 32.85	0	2028011..2028832	+	273	148268322	-	SaurJH9_1904	-	pseudouridine synthase
1876	 34.92	0	2029285..2030670	-	461	148268323	fumC	SaurJH9_1905	-	fumarate hydratase
1877	 28.03	-1	2030866..2031261	-	131	148268324	-	SaurJH9_1906	-	hypothetical protein
1878	 27.45	-1	2031809..2031961	-	50	148268325	-	SaurJH9_1907	-	hypothetical protein
1879	 31.83	0	2031986..2032585	-	199	148268326	-	SaurJH9_1908	-	hypothetical protein
1880	 31.21	0	2032744..2033214	-	156	148268327	-	SaurJH9_1909	-	RNA methyltransferase
1881	 36.97	+1	2033219..2034346	-	375	148268328	-	SaurJH9_1910	-	putative iron-sulfur cluster binding protein
1882	 33.33	0	2034497..2035225	-	242	148268329	-	SaurJH9_1911	-	ABC transporter related
1883	 31.48	0	2035212..2036669	-	485	148268330	-	SaurJH9_1912	-	polar amino acid ABC transporter, inner membrane subunit
1884	 31.26	0	2036927..2037988	-	353	148268331	-	SaurJH9_1913	-	phosphotransferase system, EIIC
1885	 30.91	0	2038572..2039891	+	439	148268332	-	SaurJH9_1914	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
1886	 30.20	0	2048319..2048765	-	148	148268333	-	SaurJH9_1915	-	ferric uptake regulator family protein
1887	 30.28	0	2048862..2049812	-	316	148268334	-	SaurJH9_1916	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
1888	 28.51	-1	2049818..2050273	-	151	148268335	-	SaurJH9_1917	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
1889	 36.82	+1	2050354..2051643	+	429	148268336	-	SaurJH9_1918	-	glutamate-1-semialdehyde aminotransferase
1890	 31.05	0	2051936..2053030	+	364	148268337	-	SaurJH9_1919	-	hypothetical protein
1891	 32.82	0	2053220..2054956	-	578	148268338	-	SaurJH9_1920	-	ABC transporter related
1892	 32.97	0	2055247..2055789	-	180	148268339	-	SaurJH9_1921	-	hypothetical protein
1893	 34.01	0	2056092..2057129	-	345	148268340	-	SaurJH9_1922	-	A/G-specific adenine glycosylase
1894	 35.07	0	2057281..2058258	+	325	148268341	-	SaurJH9_1923	-	hypothetical protein
1895	 28.79	-1	2058519..2059355	-	278	148268342	-	SaurJH9_1924	-	hypothetical protein
1896	 30.30	0	2059364..2060881	-	505	148268343	-	SaurJH9_1925	-	ABC-type polysaccharide/polyol phosphate transport system ATPase component-like protein
1897	 30.79	0	2060896..2061210	-	104	148268344	-	SaurJH9_1926	-	hypothetical protein
1898	 28.69	-1	2061188..2062006	-	272	148268345	recX	SaurJH9_1927	-	recombination regulator RecX
1899	 30.86	0	2062266..2063075	-	269	148268346	-	SaurJH9_1928	-	glycosyltransferase
1900	 35.08	0	2063415..2063930	-	171	148268347	-	SaurJH9_1929	-	PfpI family intracellular peptidase
1901	 30.86	0	2064061..2064222	-	53	148268348	-	SaurJH9_1930	-	hypothetical protein
1902	 33.59	0	2064446..2065597	+	383	148268349	-	SaurJH9_1931	-	YfkB-like domain-containing protein
1903	 35.97	0	2065857..2066387	-	176	148268350	-	SaurJH9_1932	-	hypothetical protein
1904	 33.65	0	2066477..2067724	-	415	148268351	-	SaurJH9_1933	-	peptidase M29, aminopeptidase II
1905	 31.34	0	2067736..2067936	-	66	148268352	-	SaurJH9_1934	-	hypothetical protein
1906	 34.19	0	2068083..2068547	+	154	148268353	-	SaurJH9_1935	-	protein tyrosine phosphatase
1907	 32.97	0	2068554..2068829	+	91	148268354	-	SaurJH9_1936	-	hypothetical protein
1908	 32.35	0	2069107..2070324	+	405	148268355	-	SaurJH9_1937	-	putative ribonuclease BN
1909	 33.97	0	2070437..2071066	-	209	148268356	-	SaurJH9_1938	-	two component LuxR family transcriptional regulator
1910	 31.90	0	2071056..2072099	-	347	148268357	-	SaurJH9_1939	-	integral membrane sensor signal transduction histidine kinase
1911	 30.20	0	2072096..2072797	-	233	148268358	-	SaurJH9_1940	-	hypothetical protein
1912	 26.10	-2	2072812..2073198	-	128	148268359	-	SaurJH9_1941	-	hypothetical protein
1913	 35.70	0	2073415..2074173	-	252	148268360	-	SaurJH9_1942	-	methionine aminopeptidase
1914	 32.22	0	2074645..2075631	+	328	148268361	-	SaurJH9_1943	-	membrane protein-like protein
1915	 26.09	-2	2076062..2076475	-	137	148268362	-	SaurJH9_1944	-	hypothetical protein
1916	 30.87	0	2076700..2077431	-	243	148268363	-	SaurJH9_1945	-	glutamine amidotransferase
1917	 34.32	0	2077433..2078746	-	437	148268364	-	SaurJH9_1946	-	hypothetical protein
1918	 34.53	0	2079038..2079538	+	166	148268365	-	SaurJH9_1947	-	Ferritin, Dps family protein
1919	 31.89	0	2079928..2080482	+	184	148268366	-	SaurJH9_1948	-	exonuclease, RNase T and DNA polymerase III
1920	 34.45	0	2080550..2081620	-	356	148268367	-	SaurJH9_1949	-	DNA-directed DNA polymerase
1921	 28.81	-1	2081867..2082397	-	176	148268368	-	SaurJH9_1950	-	hypothetical protein
1922	 32.97	0	2082567..2083928	-	453	148268369	-	SaurJH9_1951	-	RNA methyltransferase
1923	 33.76	0	2084009..2084956	-	315	148268370	-	SaurJH9_1952	-	putative lipid kinase
1924	 23.81	-2	2085538..2085684	-	48	148268371	-	SaurJH9_1953	-	hypothetical protein
1925	 34.87	0	2085724..2087151	-	475	148268372	gatB	SaurJH9_1954	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1926	 34.16	0	2087164..2088621	-	485	148268373	-	SaurJH9_1955	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
1927	 35.97	0	2088623..2088925	-	100	148268374	gatC	SaurJH9_1956	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
1928	 35.93	0	2089292..2090830	+	512	148268375	-	SaurJH9_1957	-	high affinity proline permease
1929	 30.67	0	2090919..2092118	-	399	148268376	-	SaurJH9_1958	-	CamS sex pheromone cAM373 family protein
1930	 33.98	0	2092131..2094134	-	667	148268377	-	SaurJH9_1959	-	DNA ligase, NAD-dependent
1931	 34.34	0	2094138..2096330	-	730	148268378	-	SaurJH9_1960	-	ATP-dependent DNA helicase PcrA
1932	 33.33	0	2096327..2097019	-	230	148268379	-	SaurJH9_1961	-	geranylgeranylglyceryl phosphate synthase-like protein
1933	 32.01	0	2097191..2097493	-	100	148268380	-	SaurJH9_1962	-	hypothetical protein
1934	 35.49	0	2097602..2098897	-	431	148268381	-	SaurJH9_1963	-	adenylosuccinate lyase
1935	 31.36	0	2099757..2100923	+	388	148268382	-	SaurJH9_1964	-	hypothetical protein
1936	 25.99	-2	2100954..2101280	+	108	148268383	-	SaurJH9_1965	-	hypothetical protein
1937	 33.91	0	2101572..2101745	-	57	148268384	-	SaurJH9_1966	-	hypothetical protein
1938	 32.34	0	2101726..2102328	-	200	148268385	-	SaurJH9_1967	-	hypothetical protein
1939	 34.06	0	2102599..2103420	-	273	148268386	nadE	SaurJH9_1968	-	NAD synthetase
1940	 33.20	0	2103413..2104882	-	489	148268387	-	SaurJH9_1969	-	nicotinate phosphoribosyltransferase
1941	 33.52	0	2105066..2106142	+	358	148268388	-	SaurJH9_1970	-	nitric-oxide synthase
1942	 32.96	0	2106162..2106956	+	264	148268389	-	SaurJH9_1971	-	prephenate dehydratase
1943	 34.36	0	2107146..2108708	-	520	148268390	-	SaurJH9_1972	-	anion transporter
1944	 32.88	0	2108913..2110010	-	365	148268391	-	SaurJH9_1973	-	parallel beta-helix repeat-containing protein
1945	 34.40	0	2110379..2110939	+	186	148268392	-	SaurJH9_1974	-	isochorismatase hydrolase
1946	 34.09	0	2110992..2111921	+	309	148268393	-	SaurJH9_1975	-	putative manganese-dependent inorganic pyrophosphatase
1947	 25.29	-2	2112114..2112287	-	57	148268394	-	SaurJH9_1976	-	hypothetical protein
1948	 33.33	0	2112339..2113718	+	459	148268395	-	SaurJH9_1977	-	aldehyde dehydrogenase
1949	 32.85	0	2113838..2114866	-	342	148268396	-	SaurJH9_1978	-	hypothetical protein
1950	 33.33	0	2115136..2115537	+	133	148268397	-	SaurJH9_1979	-	hypothetical protein
1951	 24.14	-2	2116110..2116283	-	57	148268398	-	SaurJH9_1981	-	hypothetical protein
1952	 33.33	0	2116662..2117774	+	370	148268399	-	SaurJH9_1982	-	hypothetical protein
1953	 29.30	-1	2117831..2118673	-	280	148268400	-	SaurJH9_1983	-	hypothetical protein
1954	 28.67	-1	2118670..2119227	-	185	148268401	-	SaurJH9_1984	-	hypothetical protein
1955	 27.81	-1	2119287..2119811	-	174	148268402	-	SaurJH9_1985	-	hypothetical protein
1956	 31.74	0	2119932..2120495	+	187	148268403	-	SaurJH9_1986	-	hypothetical protein
1957	 27.13	-1	2120561..2121301	-	246	148268404	-	SaurJH9_1987	-	hypothetical protein
1958	 28.87	-1	2121301..2122173	-	290	148268405	-	SaurJH9_1988	-	ABC transporter related
1959	 26.87	-1	2122170..2122850	-	226	148268406	-	SaurJH9_1989	-	hypothetical protein
1960	 31.10	0	2122851..2123747	-	298	148268407	-	SaurJH9_1990	-	ABC transporter related
1961	 32.02	0	2123744..2124124	-	126	148268408	-	SaurJH9_1991	-	regulatory protein GntR, HTH
1962	 23.73	-2	2124382..2124558	-	58	148268409	-	SaurJH9_1992	-	hypothetical protein
1963	 33.33	0	2124801..2124899	-	32	148268410	-	SaurJH9_1993	-	hypothetical protein
1964	 33.49	0	2125099..2126385	+	428	148268411	-	SaurJH9_1994	-	hypothetical protein
1965	 27.15	-1	2126664..2126954	-	96	148268412	-	SaurJH9_1995	-	MAP domain-containing protein
1966	 27.53	-1	2126969..2128399	-	476	148268413	-	SaurJH9_1996	-	MAP domain-containing protein
1967	 30.92	0	2128779..2128985	+	68	148268414	-	SaurJH9_1997	-	hypothetical protein
1968	 24.92	-2	2129560..2129868	+	102	148268415	-	SaurJH9_1998	-	hypothetical protein
1969	 29.06	-1	2130160..2130510	-	116	148268416	-	SaurJH9_1999	-	hypothetical protein
1970	 28.22	-1	2131195..2131644	+	149	148268417	-	SaurJH9_2000	-	chemotaxis-inhibiting protein CHIPS
1971	 37.04	+1	2131739..2132035	-	98	148268418	-	SaurJH9_2001	-	SH3 type 3 domain-containing protein
1972	 32.32	0	2132724..2133215	-	163	148268419	-	SaurJH9_2002	-	kinase
1973	 35.19	0	2133406..2134161	-	251	148268420	-	SaurJH9_2003	-	CHAP domain-containing protein
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.