IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1750	 35.91	0	1884968..1885432	+	154	148268197	-	SaurJH9_1774	-	hypothetical protein
1751	 35.66	0	1885676..1886278	+	200	148268198	rpsD	SaurJH9_1775	-	30S ribosomal protein S4
1752	 32.12	0	1886494..1887237	-	247	148268199	-	SaurJH9_1776	-	glycerophosphoryl diester phosphodiesterase
1753	 34.68	0	1887317..1887763	+	148	148268200	-	SaurJH9_1777	-	OsmC family protein
1754	 34.28	0	1887878..1889035	+	385	148268201	-	SaurJH9_1778	-	aminotransferase, class V
1755	 34.45	0	1889022..1890626	+	534	148268202	-	SaurJH9_1779	-	D-3-phosphoglycerate dehydrogenase
1756	 31.65	0	1890776..1891906	-	376	148268203	-	SaurJH9_1780	-	hypothetical protein
1757	 34.70	0	1892013..1893479	-	488	148268204	-	SaurJH9_1781	-	PTS system, N-acetylglucosamine-specific IIBC subunit
1758	 31.07	0	1893607..1894224	-	205	148268205	-	SaurJH9_1782	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
1759	 34.27	0	1894396..1895670	+	424	148268206	-	SaurJH9_1783	-	2-alkenal reductase
1760	 33.41	0	1895764..1897026	-	420	148268207	-	SaurJH9_1784	-	tyrosyl-tRNA synthetase
1761	 30.13	0	1897408..1898313	+	301	148268208	-	SaurJH9_1785	-	glycosyl transferase family protein
1762	 33.74	0	1898516..1901191	-	891	148268209	-	SaurJH9_1786	-	cell wall anchor domain-containing protein
1763	 36.27	0	1901524..1903191	-	555	148268210	-	SaurJH9_1787	-	formate--tetrahydrofolate ligase
1764	 36.32	0	1903631..1905337	-	568	148268211	-	SaurJH9_1788	-	acetyl-CoA synthetase
1765	 34.28	0	1905506..1906138	+	210	148268212	-	SaurJH9_1789	-	hypothetical protein
1766	 34.70	0	1906163..1907332	+	389	148268213	-	SaurJH9_1790	-	histone deacetylase superfamily protein
1767	 33.03	0	1907430..1908419	-	329	148268214	-	SaurJH9_1791	-	catabolite control protein A
1768	 33.97	0	1908959..1910050	-	363	148268215	-	SaurJH9_1792	-	bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase
1769	 33.26	0	1910744..1912102	-	452	148268216	-	SaurJH9_1793	-	hypothetical protein
1770	 33.54	0	1912176..1912667	-	163	148268217	-	SaurJH9_1794	-	hypothetical protein
1771	 31.28	0	1912741..1914054	-	437	148268218	murC	SaurJH9_1795	-	UDP-N-acetylmuramate--L-alanine ligase
1772	 33.80	0	1914078..1917902	-	1274	148268219	-	SaurJH9_1796	-	cell divisionFtsK/SpoIIIE
1773	 31.32	0	1917923..1918519	-	198	148268220	-	SaurJH9_1797	-	tRNA-binding domain-containing protein
1774	 30.89	0	1918548..1919405	-	285	148268221	-	SaurJH9_1798	-	hypothetical protein
1775	 33.33	0	1919505..1919816	-	103	148268222	-	SaurJH9_1799	-	thioredoxin domain-containing protein
1776	 33.98	0	1919881..1920957	-	358	148268223	-	SaurJH9_1800	-	glutamyl aminopeptidase
1777	 28.25	-1	1921041..1921355	+	104	148268224	-	SaurJH9_1801	-	hypothetical protein
1778	 34.52	0	1921480..1922322	-	280	148268225	-	SaurJH9_1802	-	beta-lactamase domain-containing protein
1779	 31.78	0	1922793..1923437	-	214	148268226	-	SaurJH9_1803	-	tRNA (guanine-N(7)-)-methyltransferase
1780	 34.47	0	1923452..1924243	-	263	148268227	-	SaurJH9_1804	-	hypothetical protein
1781	 32.74	0	1924793..1925641	-	282	148268228	-	SaurJH9_1805	-	D-alanine aminotransferase
1782	 34.61	0	1925645..1927054	-	469	148268229	-	SaurJH9_1806	-	dipeptidase PepV
1783	 30.02	0	1927498..1927920	-	140	148268230	-	SaurJH9_1807	-	hypothetical protein
1784	 29.89	0	1927937..1928632	-	231	148268231	-	SaurJH9_1808	-	pseudouridine synthase
1785	 32.13	0	1928629..1930290	-	553	148268232	-	SaurJH9_1809	-	polysaccharide biosynthesis protein
1786	 35.46	0	1930697..1931965	+	422	148268233	-	SaurJH9_1810	-	hypothetical protein
1787	 34.80	0	1932082..1938642	-	2186	148268234	-	SaurJH9_1811	-	cell wall anchor domain-containing protein
1788	 33.65	0	1938968..1939279	-	103	148268235	-	SaurJH9_1812	-	rhodanese domain-containing protein
1789	 34.41	0	1939301..1941718	-	805	148268236	leuS	SaurJH9_1813	-	leucyl-tRNA synthetase
1790	 35.19	0	1942006..1943187	-	393	148268237	-	SaurJH9_1814	-	major facilitator transporter
1791	 36.90	+1	1943297..1944250	+	317	148268238	-	SaurJH9_1815	-	hypothetical protein
1792	 32.80	0	1944247..1944810	+	187	148268239	-	SaurJH9_1816	-	hypothetical protein
1793	 31.74	0	1944933..1945433	-	166	148268240	-	SaurJH9_1817	-	accessory regulator A-like protein
1794	 32.37	0	1945906..1946733	-	275	148268241	-	SaurJH9_1818	-	alpha/beta hydrolase fold
1795	 32.83	0	1946966..1947967	+	333	148268242	-	SaurJH9_1819	-	proline dehydrogenase
1796	 33.12	0	1948089..1948553	-	154	148268243	-	SaurJH9_1820	-	riboflavin synthase
1797	 33.84	0	1948566..1949747	-	393	148268244	-	SaurJH9_1821	-	riboflavin biosynthesis protein
1798	 33.02	0	1949758..1950390	-	210	148268245	-	SaurJH9_1822	-	riboflavin synthase subunit alpha
1799	 34.77	0	1950397..1951440	-	347	148268246	-	SaurJH9_1823	-	riboflavin biosynthesis protein RibD
1800	 31.34	0	1951921..1953423	-	500	148268247	-	SaurJH9_1824	-	hypothetical protein
1801	 31.43	0	1953946..1954260	+	104	148268248	-	SaurJH9_1825	-	regulatory protein, ArsR
1802	 32.10	0	1954260..1955552	+	430	148268249	-	SaurJH9_1826	-	arsenical pump membrane protein
1803	 30.88	0	1955639..1956493	-	284	148268250	-	SaurJH9_1827	-	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
1804	 28.89	-1	1956769..1956993	-	74	148268251	-	SaurJH9_1828	-	hypothetical protein
1805	 27.50	-1	1957114..1957662	+	182	148268252	-	SaurJH9_1829	-	ECF subfamily RNA polymerase sigma-24 factor
1806	 29.73	-1	1957775..1958218	+	147	148268253	-	SaurJH9_1830	-	hypothetical protein
1807	 26.80	-1	1958205..1958648	-	147	148268254	-	SaurJH9_1831	-	hypothetical protein
1808	 28.46	-1	1958944..1959579	+	211	148268255	-	SaurJH9_1832	-	abortive infection protein
1809	 34.31	0	1960019..1960732	-	237	148268256	-	SaurJH9_1833	-	putative translaldolase
1810	 25.08	-2	1960992..1961294	+	100	148268257	-	SaurJH9_1834	-	hypothetical protein
1811	 34.01	0	1961472..1961915	+	147	148268258	-	SaurJH9_1835	-	CrcB protein
1812	 31.92	0	1961912..1962265	+	117	148268259	-	SaurJH9_1836	-	camphor resistance CrcB protein
1813	 34.53	0	1964262..1965095	-	277	148268260	-	SaurJH9_1839	-	2,5-didehydrogluconate reductase
1814	 30.47	0	1965307..1966215	-	302	148268261	-	SaurJH9_1840	-	hypothetical protein
1815	 37.59	+1	1966337..1967533	-	398	148268262	-	SaurJH9_1841	-	S-adenosylmethionine synthetase
1816	 34.97	0	1967905..1969497	+	530	148268263	-	SaurJH9_1842	-	phosphoenolpyruvate carboxykinase
1817	 38.52	+1	1969875..1970645	-	256	148268264	-	SaurJH9_1843	-	hypothetical protein
1818	 35.21	0	1970626..1971105	-	159	148268265	-	SaurJH9_1844	-	hypothetical protein
1819	 37.98	+1	1971165..1971422	+	85	148268266	-	SaurJH9_1845	-	hypothetical protein
1820	 36.33	0	1971419..1972420	-	333	148268267	-	SaurJH9_1846	-	L-alanine-DL-glutamate epimerase/enolase superfamily-like protein
1821	 36.11	0	1972425..1973903	-	492	148268268	-	SaurJH9_1847	-	O-succinylbenzoate-CoA ligase
1822	 29.19	-1	1974062..1974544	-	160	148268269	-	SaurJH9_1848	-	hypothetical protein
1823	 32.41	0	1974821..1975471	+	216	148268270	-	SaurJH9_1849	-	Excalibur domain-containing protein
1824	 35.54	0	1975552..1976547	+	331	148268271	-	SaurJH9_1850	-	hypothetical protein
1825	 32.06	0	1976622..1977248	+	208	148268272	-	SaurJH9_1851	-	hypothetical protein
1826	 30.99	0	1977289..1977630	+	113	148268273	-	SaurJH9_1852	-	hypothetical protein
1827	 32.81	0	1977731..1978303	+	190	148268274	-	SaurJH9_1853	-	hypothetical protein
1828	 29.47	-1	1978501..1979070	-	189	148268275	-	SaurJH9_1854	-	integrase catalytic subunit
1829	 28.57	-1	1979092..1979301	-	69	148268276	-	SaurJH9_1855	-	hypothetical protein
1830	 30.11	0	1979421..1979513	-	30	148268277	-	SaurJH9_1856	-	hypothetical protein
1831	 30.94	0	1980101..1980601	-	166	148268278	-	SaurJH9_1858	-	transposase
1832	 28.78	-1	1981053..1982282	-	409	148268279	-	SaurJH9_1859	-	restriction modification system DNA specificity subunit
1833	 38.66	+1	1982275..1983831	-	518	148268280	-	SaurJH9_1860	-	type I restriction-modification system, M subunit
1834	 33.61	0	1984192..1984911	-	239	148268281	-	SaurJH9_1861	-	peptidase S1 and S6, chymotrypsin/Hap
1835	 32.92	0	1985032..1985751	-	239	148268282	-	SaurJH9_1862	-	peptidase S1 and S6, chymotrypsin/Hap
1836	 32.42	0	1985809..1986573	-	254	148268283	-	SaurJH9_1863	-	peptidase S1 and S6, chymotrypsin/Hap
1837	 32.34	0	1986656..1987363	-	235	148268284	-	SaurJH9_1864	-	peptidase S1 and S6, chymotrypsin/Hap
1838	 29.68	-1	1987799..1988017	-	72	148268285	-	SaurJH9_1865	-	hypothetical protein
1839	 28.52	-1	1988327..1988908	+	193	148268286	-	SaurJH9_1866	-	hypothetical protein
1840	 29.75	-1	1989381..1989659	-	92	148268287	-	SaurJH9_1867	-	hypothetical protein
1841	 26.16	-2	1989855..1990328	+	157	148268288	-	SaurJH9_1868	-	hypothetical protein
1842	 27.53	-1	1990333..1991124	+	263	148268289	-	SaurJH9_1869	-	hypothetical protein
1843	 31.71	0	1991494..1992477	-	327	148268290	-	SaurJH9_1870	-	beta-channel forming cytolysin
1844	 32.80	0	1992479..1993414	-	311	148268291	-	SaurJH9_1871	-	beta-channel forming cytolysin
1845	 25.25	-2	1994310..1994408	+	32	148268292	-	SaurJH9_1872	-	hypothetical protein
1846	 24.97	-2	1994778..1995566	+	262	148268293	-	SaurJH9_1874	-	hypothetical protein
1847	 29.49	-1	1996400..1996894	+	164	148268294	-	SaurJH9_1875	-	hypothetical protein
1848	 27.85	-1	1996972..1997208	+	78	148268295	-	SaurJH9_1876	-	hypothetical protein
1849	 27.03	-1	1997229..1998005	+	258	148268296	-	SaurJH9_1877	-	hypothetical protein
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.