IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1664	 32.70	0	1787359..1788621	-	420	148268111	hisS	SaurJH9_1688	-	histidyl-tRNA synthetase
1665	 33.33	0	1789082..1789957	-	291	148268112	-	SaurJH9_1689	-	cell wall hydrolase/autolysin
1666	 32.01	0	1789954..1790406	-	150	148268113	-	SaurJH9_1690	-	D-tyrosyl-tRNA deacylase
1667	 34.34	0	1790418..1792607	-	729	148268114	-	SaurJH9_1691	-	GTP pyrophosphokinase
1668	 34.49	0	1793035..1793553	-	172	148268115	-	SaurJH9_1692	-	adenine phosphoribosyltransferase
1669	 32.54	0	1793575..1795848	-	757	148268116	-	SaurJH9_1693	-	single-stranded-DNA-specific exonuclease RecJ
1670	 32.46	0	1796051..1798330	-	759	148268117	-	SaurJH9_1694	-	bifunctional preprotein translocase subunit SecD/SecF
1671	 31.80	0	1798605..1798865	-	86	148268118	-	SaurJH9_1695	-	preprotein translocase, YajC subunit
1672	 35.70	0	1798884..1800023	-	379	148268119	tgt	SaurJH9_1696	-	queuine tRNA-ribosyltransferase
1673	 33.53	0	1800046..1801071	-	341	148268120	-	SaurJH9_1697	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1674	 37.11	+1	1801073..1802077	-	334	148268121	ruvB	SaurJH9_1698	-	Holliday junction DNA helicase B
1675	 33.50	0	1802109..1802711	-	200	148268122	-	SaurJH9_1699	-	Holliday junction DNA helicase RuvA
1676	 29.19	-1	1802725..1803183	-	152	148268123	-	SaurJH9_1700	-	hypothetical protein
1677	 36.50	+1	1803193..1804485	-	430	148268124	obgE	SaurJH9_1701	-	GTPase ObgE
1678	 38.25	+1	1804839..1805123	-	94	148268125	rpmA	SaurJH9_1702	-	50S ribosomal protein L27
1679	 33.96	0	1805135..1805455	-	106	148268126	-	SaurJH9_1703	-	hypothetical protein
1680	 33.66	0	1805461..1805769	-	102	148268127	rplU	SaurJH9_1704	-	50S ribosomal protein L21
1681	 28.63	-1	1806005..1806535	-	176	148268128	-	SaurJH9_1705	-	rod shape-determining protein MreD
1682	 30.84	0	1806535..1807377	-	280	148268129	-	SaurJH9_1706	-	rod shape-determining protein MreC
1683	 38.33	+1	1807576..1807695	-	39	148268130	-	SaurJH9_1707	-	hypothetical protein
1684	 28.90	-1	1807769..1808242	-	157	148268131	-	SaurJH9_1708	-	hypothetical protein
1685	 28.24	-1	1808384..1808599	+	71	148268132	-	SaurJH9_1709	-	hypothetical protein
1686	 36.14	0	1808716..1808964	-	82	148268133	-	SaurJH9_1710	-	hypothetical protein
1687	 33.33	0	1809068..1809184	-	38	148268134	-	SaurJH9_1711	-	hypothetical protein
1688	 34.39	0	1809449..1810111	-	220	148268135	-	SaurJH9_1712	-	methyltransferase type 12
1689	 32.51	0	1810620..1811351	+	243	148268136	-	SaurJH9_1713	-	rRNA (adenine-N(6)-)-methyltransferase
1690	 36.40	+1	1811477..1812259	-	260	148268137	-	SaurJH9_1714	-	3''-adenylyltransferase
1691	 29.89	0	1812410..1812787	-	125	148268138	-	SaurJH9_1715	-	hypothetical protein
1692	 33.86	0	1812794..1814686	-	630	148268139	-	SaurJH9_1716	-	phage integrase family protein
1693	 32.14	0	1814683..1815768	-	361	148268140	-	SaurJH9_1717	-	phage integrase family protein
1694	 31.35	0	1815887..1816441	-	184	148268141	-	SaurJH9_1718	-	DNA repair protein RadC
1695	 28.53	-1	1816438..1817145	-	235	148268142	-	SaurJH9_1719	-	peptidase A24A domain-containing protein
1696	 32.78	0	1817415..1818686	-	423	148268143	-	SaurJH9_1720	-	FolC bifunctional protein
1697	 34.44	0	1818699..1821329	-	876	148268144	valS	SaurJH9_1721	-	valyl-tRNA synthetase
1698	 32.98	0	1821732..1822292	+	186	148268145	-	SaurJH9_1722	-	DNA-3-methyladenine glycosylase I
1699	 29.98	0	1822515..1823588	-	357	148268146	-	SaurJH9_1723	-	putative ammonia monooxygenase
1700	 40.20	+2	1823622..1823723	-	33	148268147	-	SaurJH9_1724	-	hypothetical protein
1701	 36.75	+1	1823784..1825070	-	428	148268148	-	SaurJH9_1725	-	glutamate-1-semialdehyde aminotransferase
1702	 35.59	0	1825118..1826092	-	324	148268149	-	SaurJH9_1726	-	delta-aminolevulinic acid dehydratase
1703	 30.49	0	1826095..1826763	-	222	148268150	-	SaurJH9_1727	-	uroporphyrinogen III synthase
1704	 34.41	0	1826785..1827711	-	308	148268151	hemC	SaurJH9_1728	-	porphobilinogen deaminase
1705	 28.31	-1	1827753..1828568	-	271	148268152	-	SaurJH9_1729	-	cytochrome c assembly protein
1706	 33.78	0	1828590..1829936	-	448	148268153	hemA	SaurJH9_1730	-	glutamyl-tRNA reductase
1707	 28.93	-1	1830153..1830743	-	196	148268154	-	SaurJH9_1731	-	GTPase EngB
1708	 34.05	0	1830897..1832159	-	420	148268155	clpX	SaurJH9_1732	-	ATP-dependent protease ATP-binding subunit
1709	 33.64	0	1832310..1833611	-	433	148268156	tig	SaurJH9_1733	-	trigger factor
1710	 29.25	-1	1833774..1834703	-	309	148268157	-	SaurJH9_1734	-	hypothetical protein
1711	 33.33	0	1834722..1835330	-	202	148268158	-	SaurJH9_1735	-	NUDIX hydrolase
1712	 36.41	+1	1835472..1835828	-	118	148268159	rplT	SaurJH9_1736	-	50S ribosomal protein L20
1713	 34.83	0	1835875..1836075	-	66	148268160	rpmI	SaurJH9_1737	-	50S ribosomal protein L35
1714	 34.99	0	1836104..1836706	-	200	148268161	infC	SaurJH9_1738	-	translation initiation factor IF-3
1715	 34.34	0	1836860..1838353	-	497	148268162	-	SaurJH9_1739	-	amino acid permease-associated region
1716	 35.19	0	1838779..1840716	-	645	148268163	-	SaurJH9_1740	-	threonyl-tRNA synthetase
1717	 34.42	0	1841129..1842049	-	306	148268164	-	SaurJH9_1741	-	primosomal protein DnaI
1718	 32.76	0	1842049..1843449	-	466	148268165	-	SaurJH9_1742	-	replication initiation and membrane attachment family protein
1719	 35.46	0	1843450..1843920	-	156	148268166	-	SaurJH9_1743	-	transcriptional regulator NrdR
1720	 32.75	0	1844131..1845156	-	341	148268167	-	SaurJH9_1744	-	glyceraldehyde 3-phosphate dehydrogenase 2
1721	 34.46	0	1845326..1845949	-	207	148268168	-	SaurJH9_1745	-	dephospho-CoA kinase
1722	 32.30	0	1845965..1846837	-	290	148268169	-	SaurJH9_1746	-	formamidopyrimidine-DNA glycosylase
1723	 32.12	0	1846853..1849483	-	876	148268170	-	SaurJH9_1747	-	DNA polymerase I
1724	 28.49	-1	1849777..1851264	-	495	148268171	-	SaurJH9_1748	-	hypothetical protein
1725	 31.11	0	1851763..1853427	-	554	148268172	-	SaurJH9_1749	-	multi-sensor signal transduction histidine kinase
1726	 34.04	0	1853424..1854128	-	234	148268173	-	SaurJH9_1750	-	two component transcriptional regulator
1727	 34.99	0	1854518..1855786	-	422	148268174	-	SaurJH9_1751	-	isocitrate dehydrogenase
1728	 36.19	0	1855835..1856956	-	373	148268175	-	SaurJH9_1752	-	methylcitrate synthase
1729	 34.65	0	1857304..1858665	+	453	148268176	-	SaurJH9_1753	-	amino acid permease-associated region
1730	 34.53	0	1859013..1860770	-	585	148268177	-	SaurJH9_1754	-	pyruvate kinase
1731	 37.25	+1	1860792..1861760	-	322	148268178	-	SaurJH9_1755	-	6-phosphofructokinase
1732	 34.29	0	1862029..1862973	-	314	148268179	-	SaurJH9_1756	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
1733	 34.38	0	1862973..1863830	-	285	148268180	-	SaurJH9_1757	-	acetyl-CoA carboxylase subunit beta
1734	 35.77	0	1864025..1865254	-	409	148268181	-	SaurJH9_1758	-	malate dehydrogenase
1735	 31.61	0	1865704..1868901	-	1065	148268182	-	SaurJH9_1759	-	DNA polymerase III, alpha subunit
1736	 35.35	0	1868922..1869863	-	313	148268183	-	SaurJH9_1760	-	phosphoesterase domain-containing protein
1737	 33.64	0	1870175..1871473	-	432	148268184	-	SaurJH9_1761	-	DRTGG domain-containing protein
1738	 33.33	0	1871678..1872091	+	137	148268185	-	SaurJH9_1762	-	UspA domain-containing protein
1739	 33.62	0	1872396..1873085	-	229	148268186	-	SaurJH9_1763	-	beta-lactamase domain-containing protein
1740	 33.05	0	1873260..1874315	+	351	148268187	-	SaurJH9_1764	-	peptidase M24
1741	 36.10	0	1874631..1875749	-	372	148268188	-	SaurJH9_1765	-	alanine dehydrogenase
1742	 35.53	0	1875890..1876390	+	166	148268189	-	SaurJH9_1766	-	UspA domain-containing protein
1743	 35.08	0	1876636..1877838	-	400	148268190	-	SaurJH9_1767	-	acetate kinase
1744	 31.86	0	1877926..1878873	-	315	148268191	-	SaurJH9_1768	-	hypothetical protein
1745	 34.95	0	1878996..1879490	-	164	148268192	-	SaurJH9_1769	-	redoxin domain-containing protein
1746	 32.30	0	1879588..1880358	-	256	148268193	-	SaurJH9_1770	-	hypothetical protein
1747	 33.01	0	1880402..1881625	-	407	148268194	-	SaurJH9_1771	-	thiamine biosynthesis/tRNA modification protein ThiI
1748	 31.53	0	1881625..1882791	-	388	148268195	-	SaurJH9_1772	-	aminotransferase, class V
1749	 31.09	0	1883137..1884831	-	564	148268196	-	SaurJH9_1773	-	septation ring formation regulator EzrA
1750	 35.91	0	1884968..1885432	+	154	148268197	-	SaurJH9_1774	-	hypothetical protein
1751	 35.66	0	1885676..1886278	+	200	148268198	rpsD	SaurJH9_1775	-	30S ribosomal protein S4
1752	 32.12	0	1886494..1887237	-	247	148268199	-	SaurJH9_1776	-	glycerophosphoryl diester phosphodiesterase
1753	 34.68	0	1887317..1887763	+	148	148268200	-	SaurJH9_1777	-	OsmC family protein
1754	 34.28	0	1887878..1889035	+	385	148268201	-	SaurJH9_1778	-	aminotransferase, class V
1755	 34.45	0	1889022..1890626	+	534	148268202	-	SaurJH9_1779	-	D-3-phosphoglycerate dehydrogenase
1756	 31.65	0	1890776..1891906	-	376	148268203	-	SaurJH9_1780	-	hypothetical protein
1757	 34.70	0	1892013..1893479	-	488	148268204	-	SaurJH9_1781	-	PTS system, N-acetylglucosamine-specific IIBC subunit
1758	 31.07	0	1893607..1894224	-	205	148268205	-	SaurJH9_1782	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
1759	 34.27	0	1894396..1895670	+	424	148268206	-	SaurJH9_1783	-	2-alkenal reductase
1760	 33.41	0	1895764..1897026	-	420	148268207	-	SaurJH9_1784	-	tyrosyl-tRNA synthetase
1761	 30.13	0	1897408..1898313	+	301	148268208	-	SaurJH9_1785	-	glycosyl transferase family protein
1762	 33.74	0	1898516..1901191	-	891	148268209	-	SaurJH9_1786	-	cell wall anchor domain-containing protein
1763	 36.27	0	1901524..1903191	-	555	148268210	-	SaurJH9_1787	-	formate--tetrahydrofolate ligase
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.