IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1619	 28.43	-1	1740853..1741830	-	325	148268066	-	SaurJH9_1640	-	heat-inducible transcription repressor HrcA
1620	 32.36	0	1741931..1743055	-	374	148268067	-	SaurJH9_1641	-	coproporphyrinogen III oxidase
1621	 33.88	0	1743621..1745444	-	607	148268068	-	SaurJH9_1642	-	GTP-binding protein LepA
1622	 31.35	0	1745790..1746041	+	83	148268069	rpsT	SaurJH9_1643	-	30S ribosomal protein S20
1623	 27.08	-1	1746086..1747060	-	324	148268070	holA	SaurJH9_1644	-	DNA polymerase III subunit delta
1624	 28.11	-1	1747117..1749297	-	726	148268071	-	SaurJH9_1645	-	DNA internalization-related competence protein ComEC/Rec2
1625	 33.56	0	1749323..1749754	-	143	148268072	-	SaurJH9_1646	-	ComE operon protein 2
1626	 29.35	-1	1749876..1750553	-	225	148268073	-	SaurJH9_1647	-	helix-hairpin-helix repeat-containing competence protein ComEA
1627	 30.13	0	1750602..1751318	-	238	148268074	-	SaurJH9_1648	-	hypothetical protein
1628	 33.33	0	1751321..1751674	-	117	148268075	-	SaurJH9_1649	-	hypothetical protein
1629	 31.97	0	1751675..1752259	-	194	148268076	-	SaurJH9_1650	-	hypothetical protein
1630	 34.21	0	1752249..1752818	-	189	148268077	-	SaurJH9_1651	-	nicotinate (nicotinamide) nucleotide adenylyltransferase
1631	 29.21	-1	1752821..1753111	-	96	148268078	-	SaurJH9_1652	-	hypothetical protein
1632	 31.35	0	1753115..1753921	-	268	148268079	-	SaurJH9_1653	-	shikimate 5-dehydrogenase
1633	 33.70	0	1753935..1755035	-	366	148268080	-	SaurJH9_1654	-	GTP-binding protein YqeH
1634	 32.95	0	1755036..1755563	-	175	148268081	-	SaurJH9_1655	-	HAD family phosphatase
1635	 33.19	0	1755583..1756269	-	228	148268082	-	SaurJH9_1656	-	adenosylhomocysteine nucleosidase
1636	 27.41	-1	1756583..1756852	+	89	148268083	-	SaurJH9_1657	-	hypothetical protein
1637	 30.38	0	1757391..1757864	-	157	148268084	-	SaurJH9_1659	-	toxin OB-fold domain-containing protein
1638	 33.58	0	1760081..1761310	-	409	148268085	-	SaurJH9_1661	-	manganese transporter NRAMP
1639	 34.93	0	1761323..1762075	-	250	148268086	-	SaurJH9_1662	-	hypothetical protein
1640	 35.76	0	1762075..1763436	-	453	148268087	-	SaurJH9_1663	-	carbamoyl-phosphate synthase L chain, ATP-binding
1641	 30.67	0	1763450..1763899	-	149	148268088	-	SaurJH9_1664	-	biotin/lipoyl attachment domain-containing protein
1642	 33.73	0	1763901..1764911	-	336	148268089	-	SaurJH9_1665	-	hypothetical protein
1643	 32.93	0	1764901..1765635	-	244	148268090	-	SaurJH9_1666	-	hypothetical protein
1644	 33.33	0	1765961..1766437	-	158	148268091	-	SaurJH9_1667	-	transcription elongation factor
1645	 33.33	0	1766465..1767088	-	207	148268092	-	SaurJH9_1668	-	uridine kinase
1646	 35.46	0	1767088..1768356	-	422	148268093	-	SaurJH9_1669	-	peptidase U32
1647	 33.87	0	1768368..1769291	-	307	148268094	-	SaurJH9_1670	-	peptidase U32
1648	 29.42	-1	1769294..1769932	-	212	148268095	-	SaurJH9_1671	-	O-methyltransferase family protein
1649	 32.69	0	1770217..1770525	-	102	148268096	-	SaurJH9_1672	-	hypothetical protein
1650	 32.87	0	1770540..1770968	-	142	148268097	-	SaurJH9_1673	-	hypothetical protein
1651	 30.65	0	1770972..1771232	-	86	148268098	-	SaurJH9_1674	-	hypothetical protein
1652	 35.04	0	1771295..1773925	-	876	148268099	-	SaurJH9_1675	-	alanyl-tRNA synthetase
1653	 32.77	0	1774268..1776745	-	825	148268100	-	SaurJH9_1676	-	RecD/TraA family helicase
1654	 31.39	0	1776747..1777415	-	222	148268101	-	SaurJH9_1677	-	TPR repeat-containing protein
1655	 34.85	0	1778110..1779228	-	372	148268102	-	SaurJH9_1679	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1656	 34.30	0	1779229..1780371	-	380	148268103	-	SaurJH9_1680	-	aminotransferase, class V
1657	 36.39	+1	1780683..1781696	+	337	148268104	-	SaurJH9_1681	-	luciferase family protein
1658	 24.49	-2	1781933..1782079	-	48	148268105	-	SaurJH9_1682	-	hypothetical protein
1659	 29.51	-1	1782119..1782301	-	60	148268106	-	SaurJH9_1683	-	CsbD family protein
1660	 34.52	0	1782401..1782823	-	140	148268107	-	SaurJH9_1684	-	BadM/Rrf2 family transcriptional regulator
1661	 36.00	0	1782908..1784182	+	424	148268108	-	SaurJH9_1685	-	recombination factor protein RarA
1662	 32.95	0	1784343..1785116	-	257	148268109	-	SaurJH9_1686	-	hypothetical protein
1663	 35.54	0	1785577..1787343	-	588	148268110	aspS	SaurJH9_1687	-	aspartyl-tRNA synthetase
1664	 32.70	0	1787359..1788621	-	420	148268111	hisS	SaurJH9_1688	-	histidyl-tRNA synthetase
1665	 33.33	0	1789082..1789957	-	291	148268112	-	SaurJH9_1689	-	cell wall hydrolase/autolysin
1666	 32.01	0	1789954..1790406	-	150	148268113	-	SaurJH9_1690	-	D-tyrosyl-tRNA deacylase
1667	 34.34	0	1790418..1792607	-	729	148268114	-	SaurJH9_1691	-	GTP pyrophosphokinase
1668	 34.49	0	1793035..1793553	-	172	148268115	-	SaurJH9_1692	-	adenine phosphoribosyltransferase
1669	 32.54	0	1793575..1795848	-	757	148268116	-	SaurJH9_1693	-	single-stranded-DNA-specific exonuclease RecJ
1670	 32.46	0	1796051..1798330	-	759	148268117	-	SaurJH9_1694	-	bifunctional preprotein translocase subunit SecD/SecF
1671	 31.80	0	1798605..1798865	-	86	148268118	-	SaurJH9_1695	-	preprotein translocase, YajC subunit
1672	 35.70	0	1798884..1800023	-	379	148268119	tgt	SaurJH9_1696	-	queuine tRNA-ribosyltransferase
1673	 33.53	0	1800046..1801071	-	341	148268120	-	SaurJH9_1697	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1674	 37.11	+1	1801073..1802077	-	334	148268121	ruvB	SaurJH9_1698	-	Holliday junction DNA helicase B
1675	 33.50	0	1802109..1802711	-	200	148268122	-	SaurJH9_1699	-	Holliday junction DNA helicase RuvA
1676	 29.19	-1	1802725..1803183	-	152	148268123	-	SaurJH9_1700	-	hypothetical protein
1677	 36.50	+1	1803193..1804485	-	430	148268124	obgE	SaurJH9_1701	-	GTPase ObgE
1678	 38.25	+1	1804839..1805123	-	94	148268125	rpmA	SaurJH9_1702	-	50S ribosomal protein L27
1679	 33.96	0	1805135..1805455	-	106	148268126	-	SaurJH9_1703	-	hypothetical protein
1680	 33.66	0	1805461..1805769	-	102	148268127	rplU	SaurJH9_1704	-	50S ribosomal protein L21
1681	 28.63	-1	1806005..1806535	-	176	148268128	-	SaurJH9_1705	-	rod shape-determining protein MreD
1682	 30.84	0	1806535..1807377	-	280	148268129	-	SaurJH9_1706	-	rod shape-determining protein MreC
1683	 38.33	+1	1807576..1807695	-	39	148268130	-	SaurJH9_1707	-	hypothetical protein
1684	 28.90	-1	1807769..1808242	-	157	148268131	-	SaurJH9_1708	-	hypothetical protein
1685	 28.24	-1	1808384..1808599	+	71	148268132	-	SaurJH9_1709	-	hypothetical protein
1686	 36.14	0	1808716..1808964	-	82	148268133	-	SaurJH9_1710	-	hypothetical protein
1687	 33.33	0	1809068..1809184	-	38	148268134	-	SaurJH9_1711	-	hypothetical protein
1688	 34.39	0	1809449..1810111	-	220	148268135	-	SaurJH9_1712	-	methyltransferase type 12
1689	 32.51	0	1810620..1811351	+	243	148268136	-	SaurJH9_1713	-	rRNA (adenine-N(6)-)-methyltransferase
1690	 36.40	+1	1811477..1812259	-	260	148268137	-	SaurJH9_1714	-	3''-adenylyltransferase
1691	 29.89	0	1812410..1812787	-	125	148268138	-	SaurJH9_1715	-	hypothetical protein
1692	 33.86	0	1812794..1814686	-	630	148268139	-	SaurJH9_1716	-	phage integrase family protein
1693	 32.14	0	1814683..1815768	-	361	148268140	-	SaurJH9_1717	-	phage integrase family protein
1694	 31.35	0	1815887..1816441	-	184	148268141	-	SaurJH9_1718	-	DNA repair protein RadC
1695	 28.53	-1	1816438..1817145	-	235	148268142	-	SaurJH9_1719	-	peptidase A24A domain-containing protein
1696	 32.78	0	1817415..1818686	-	423	148268143	-	SaurJH9_1720	-	FolC bifunctional protein
1697	 34.44	0	1818699..1821329	-	876	148268144	valS	SaurJH9_1721	-	valyl-tRNA synthetase
1698	 32.98	0	1821732..1822292	+	186	148268145	-	SaurJH9_1722	-	DNA-3-methyladenine glycosylase I
1699	 29.98	0	1822515..1823588	-	357	148268146	-	SaurJH9_1723	-	putative ammonia monooxygenase
1700	 40.20	+2	1823622..1823723	-	33	148268147	-	SaurJH9_1724	-	hypothetical protein
1701	 36.75	+1	1823784..1825070	-	428	148268148	-	SaurJH9_1725	-	glutamate-1-semialdehyde aminotransferase
1702	 35.59	0	1825118..1826092	-	324	148268149	-	SaurJH9_1726	-	delta-aminolevulinic acid dehydratase
1703	 30.49	0	1826095..1826763	-	222	148268150	-	SaurJH9_1727	-	uroporphyrinogen III synthase
1704	 34.41	0	1826785..1827711	-	308	148268151	hemC	SaurJH9_1728	-	porphobilinogen deaminase
1705	 28.31	-1	1827753..1828568	-	271	148268152	-	SaurJH9_1729	-	cytochrome c assembly protein
1706	 33.78	0	1828590..1829936	-	448	148268153	hemA	SaurJH9_1730	-	glutamyl-tRNA reductase
1707	 28.93	-1	1830153..1830743	-	196	148268154	-	SaurJH9_1731	-	GTPase EngB
1708	 34.05	0	1830897..1832159	-	420	148268155	clpX	SaurJH9_1732	-	ATP-dependent protease ATP-binding subunit
1709	 33.64	0	1832310..1833611	-	433	148268156	tig	SaurJH9_1733	-	trigger factor
1710	 29.25	-1	1833774..1834703	-	309	148268157	-	SaurJH9_1734	-	hypothetical protein
1711	 33.33	0	1834722..1835330	-	202	148268158	-	SaurJH9_1735	-	NUDIX hydrolase
1712	 36.41	+1	1835472..1835828	-	118	148268159	rplT	SaurJH9_1736	-	50S ribosomal protein L20
1713	 34.83	0	1835875..1836075	-	66	148268160	rpmI	SaurJH9_1737	-	50S ribosomal protein L35
1714	 34.99	0	1836104..1836706	-	200	148268161	infC	SaurJH9_1738	-	translation initiation factor IF-3
1715	 34.34	0	1836860..1838353	-	497	148268162	-	SaurJH9_1739	-	amino acid permease-associated region
1716	 35.19	0	1838779..1840716	-	645	148268163	-	SaurJH9_1740	-	threonyl-tRNA synthetase
1717	 34.42	0	1841129..1842049	-	306	148268164	-	SaurJH9_1741	-	primosomal protein DnaI
1718	 32.76	0	1842049..1843449	-	466	148268165	-	SaurJH9_1742	-	replication initiation and membrane attachment family protein
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.