IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1580	 27.17	-1	1703937..1705007	-	356	148268027	-	SaurJH9_1601	-	type II secretion system protein
1581	 31.38	0	1704979..1705953	-	324	148268028	-	SaurJH9_1602	-	type II secretion system protein E
1582	 32.37	0	1706005..1706628	-	207	148268029	-	SaurJH9_1603	-	beta-lactamase domain-containing protein
1583	 31.21	0	1706625..1706954	-	109	148268030	-	SaurJH9_1604	-	hypothetical protein
1584	 34.55	0	1706954..1707940	-	328	148268031	-	SaurJH9_1605	-	ROK family glucokinase
1585	 26.47	-2	1707937..1708140	-	67	148268032	-	SaurJH9_1606	-	hypothetical protein
1586	 27.60	-1	1708121..1709584	-	487	148268033	-	SaurJH9_1607	-	rhomboid family protein
1587	 29.29	-1	1709596..1710189	-	197	148268034	-	SaurJH9_1608	-	5-formyltetrahydrofolate cyclo-ligase
1588	 34.00	0	1710344..1710493	-	49	148268035	rpmG	SaurJH9_1609	-	50S ribosomal protein L33
1589	 33.48	0	1710606..1712681	-	691	148268036	-	SaurJH9_1610	-	penicillin-binding protein 3
1590	 35.00	0	1712802..1713401	-	199	148268037	-	SaurJH9_1611	-	superoxide dismutase
1591	 28.71	-1	1713677..1714087	-	136	148268038	-	SaurJH9_1612	-	ferric uptake regulator family protein
1592	 31.84	0	1714074..1714946	-	290	148268039	-	SaurJH9_1613	-	ABC-3 protein
1593	 30.41	0	1714979..1715764	-	261	148268040	-	SaurJH9_1614	-	ABC transporter related
1594	 33.33	0	1715890..1716780	-	296	148268041	-	SaurJH9_1615	-	endonuclease IV
1595	 32.29	0	1716790..1718136	-	448	148268042	-	SaurJH9_1616	-	DEAD/DEAH box helicase domain-containing protein
1596	 31.06	0	1718250..1719350	-	366	148268043	-	SaurJH9_1617	-	hypothetical protein
1597	 31.86	0	1719353..1720030	-	225	148268044	-	SaurJH9_1618	-	hypothetical protein
1598	 33.69	0	1720161..1721267	-	368	148268045	-	SaurJH9_1619	-	RNA polymerase sigma factor RpoD
1599	 31.96	0	1721491..1723308	-	605	148268046	-	SaurJH9_1620	-	DNA primase
1600	 32.84	0	1723369..1724187	-	272	148268047	-	SaurJH9_1621	-	hypothetical protein
1601	 30.37	0	1724198..1724737	-	179	148268048	-	SaurJH9_1622	-	CBS domain-containing protein
1602	 34.34	0	1725156..1726547	+	463	148268049	-	SaurJH9_1623	-	glycyl-tRNA synthetase
1603	 32.66	0	1726697..1727443	-	248	148268050	-	SaurJH9_1624	-	DNA repair protein RecO
1604	 33.00	0	1727471..1728370	-	299	148268051	era	SaurJH9_1625	-	GTP-binding protein Era
1605	 35.31	0	1728371..1728775	-	134	148268052	-	SaurJH9_1626	-	cytidine deaminase
1606	 28.70	-1	1728786..1729130	-	114	148268053	-	SaurJH9_1627	-	diacylglycerol kinase
1607	 32.48	0	1729133..1729600	-	155	148268054	-	SaurJH9_1628	-	hypothetical protein
1608	 35.13	0	1729601..1730548	-	315	148268055	-	SaurJH9_1629	-	PhoH family protein
1609	 32.19	0	1730852..1731550	-	232	148268056	-	SaurJH9_1630	-	hypothetical protein
1610	 37.07	+1	1731567..1732556	-	329	148268057	-	SaurJH9_1631	-	hypothetical protein
1611	 32.49	0	1732574..1733281	-	235	148268058	-	SaurJH9_1632	-	hypothetical protein
1612	 32.20	0	1733501..1733677	-	58	148268059	rpsU	SaurJH9_1633	-	30S ribosomal protein S21
1613	 34.60	0	1733970..1735316	-	448	148268060	-	SaurJH9_1634	-	RNA modification protein
1614	 31.74	0	1735323..1736075	-	250	148268061	-	SaurJH9_1635	-	hypothetical protein
1615	 34.19	0	1736077..1737015	-	312	148268062	-	SaurJH9_1636	-	ribosomal protein L11 methyltransferase
1616	 35.70	0	1737019..1738158	-	379	148268063	-	SaurJH9_1637	-	chaperone protein DnaJ
1617	 35.52	0	1738294..1740126	-	610	148268064	-	SaurJH9_1638	-	chaperone protein DnaK
1618	 31.10	0	1740195..1740821	-	208	148268065	-	SaurJH9_1639	-	GrpE protein
1619	 28.43	-1	1740853..1741830	-	325	148268066	-	SaurJH9_1640	-	heat-inducible transcription repressor HrcA
1620	 32.36	0	1741931..1743055	-	374	148268067	-	SaurJH9_1641	-	coproporphyrinogen III oxidase
1621	 33.88	0	1743621..1745444	-	607	148268068	-	SaurJH9_1642	-	GTP-binding protein LepA
1622	 31.35	0	1745790..1746041	+	83	148268069	rpsT	SaurJH9_1643	-	30S ribosomal protein S20
1623	 27.08	-1	1746086..1747060	-	324	148268070	holA	SaurJH9_1644	-	DNA polymerase III subunit delta
1624	 28.11	-1	1747117..1749297	-	726	148268071	-	SaurJH9_1645	-	DNA internalization-related competence protein ComEC/Rec2
1625	 33.56	0	1749323..1749754	-	143	148268072	-	SaurJH9_1646	-	ComE operon protein 2
1626	 29.35	-1	1749876..1750553	-	225	148268073	-	SaurJH9_1647	-	helix-hairpin-helix repeat-containing competence protein ComEA
1627	 30.13	0	1750602..1751318	-	238	148268074	-	SaurJH9_1648	-	hypothetical protein
1628	 33.33	0	1751321..1751674	-	117	148268075	-	SaurJH9_1649	-	hypothetical protein
1629	 31.97	0	1751675..1752259	-	194	148268076	-	SaurJH9_1650	-	hypothetical protein
1630	 34.21	0	1752249..1752818	-	189	148268077	-	SaurJH9_1651	-	nicotinate (nicotinamide) nucleotide adenylyltransferase
1631	 29.21	-1	1752821..1753111	-	96	148268078	-	SaurJH9_1652	-	hypothetical protein
1632	 31.35	0	1753115..1753921	-	268	148268079	-	SaurJH9_1653	-	shikimate 5-dehydrogenase
1633	 33.70	0	1753935..1755035	-	366	148268080	-	SaurJH9_1654	-	GTP-binding protein YqeH
1634	 32.95	0	1755036..1755563	-	175	148268081	-	SaurJH9_1655	-	HAD family phosphatase
1635	 33.19	0	1755583..1756269	-	228	148268082	-	SaurJH9_1656	-	adenosylhomocysteine nucleosidase
1636	 27.41	-1	1756583..1756852	+	89	148268083	-	SaurJH9_1657	-	hypothetical protein
1637	 30.38	0	1757391..1757864	-	157	148268084	-	SaurJH9_1659	-	toxin OB-fold domain-containing protein
1638	 33.58	0	1760081..1761310	-	409	148268085	-	SaurJH9_1661	-	manganese transporter NRAMP
1639	 34.93	0	1761323..1762075	-	250	148268086	-	SaurJH9_1662	-	hypothetical protein
1640	 35.76	0	1762075..1763436	-	453	148268087	-	SaurJH9_1663	-	carbamoyl-phosphate synthase L chain, ATP-binding
1641	 30.67	0	1763450..1763899	-	149	148268088	-	SaurJH9_1664	-	biotin/lipoyl attachment domain-containing protein
1642	 33.73	0	1763901..1764911	-	336	148268089	-	SaurJH9_1665	-	hypothetical protein
1643	 32.93	0	1764901..1765635	-	244	148268090	-	SaurJH9_1666	-	hypothetical protein
1644	 33.33	0	1765961..1766437	-	158	148268091	-	SaurJH9_1667	-	transcription elongation factor
1645	 33.33	0	1766465..1767088	-	207	148268092	-	SaurJH9_1668	-	uridine kinase
1646	 35.46	0	1767088..1768356	-	422	148268093	-	SaurJH9_1669	-	peptidase U32
1647	 33.87	0	1768368..1769291	-	307	148268094	-	SaurJH9_1670	-	peptidase U32
1648	 29.42	-1	1769294..1769932	-	212	148268095	-	SaurJH9_1671	-	O-methyltransferase family protein
1649	 32.69	0	1770217..1770525	-	102	148268096	-	SaurJH9_1672	-	hypothetical protein
1650	 32.87	0	1770540..1770968	-	142	148268097	-	SaurJH9_1673	-	hypothetical protein
1651	 30.65	0	1770972..1771232	-	86	148268098	-	SaurJH9_1674	-	hypothetical protein
1652	 35.04	0	1771295..1773925	-	876	148268099	-	SaurJH9_1675	-	alanyl-tRNA synthetase
1653	 32.77	0	1774268..1776745	-	825	148268100	-	SaurJH9_1676	-	RecD/TraA family helicase
1654	 31.39	0	1776747..1777415	-	222	148268101	-	SaurJH9_1677	-	TPR repeat-containing protein
1655	 34.85	0	1778110..1779228	-	372	148268102	-	SaurJH9_1679	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1656	 34.30	0	1779229..1780371	-	380	148268103	-	SaurJH9_1680	-	aminotransferase, class V
1657	 36.39	+1	1780683..1781696	+	337	148268104	-	SaurJH9_1681	-	luciferase family protein
1658	 24.49	-2	1781933..1782079	-	48	148268105	-	SaurJH9_1682	-	hypothetical protein
1659	 29.51	-1	1782119..1782301	-	60	148268106	-	SaurJH9_1683	-	CsbD family protein
1660	 34.52	0	1782401..1782823	-	140	148268107	-	SaurJH9_1684	-	BadM/Rrf2 family transcriptional regulator
1661	 36.00	0	1782908..1784182	+	424	148268108	-	SaurJH9_1685	-	recombination factor protein RarA
1662	 32.95	0	1784343..1785116	-	257	148268109	-	SaurJH9_1686	-	hypothetical protein
1663	 35.54	0	1785577..1787343	-	588	148268110	aspS	SaurJH9_1687	-	aspartyl-tRNA synthetase
1664	 32.70	0	1787359..1788621	-	420	148268111	hisS	SaurJH9_1688	-	histidyl-tRNA synthetase
1665	 33.33	0	1789082..1789957	-	291	148268112	-	SaurJH9_1689	-	cell wall hydrolase/autolysin
1666	 32.01	0	1789954..1790406	-	150	148268113	-	SaurJH9_1690	-	D-tyrosyl-tRNA deacylase
1667	 34.34	0	1790418..1792607	-	729	148268114	-	SaurJH9_1691	-	GTP pyrophosphokinase
1668	 34.49	0	1793035..1793553	-	172	148268115	-	SaurJH9_1692	-	adenine phosphoribosyltransferase
1669	 32.54	0	1793575..1795848	-	757	148268116	-	SaurJH9_1693	-	single-stranded-DNA-specific exonuclease RecJ
1670	 32.46	0	1796051..1798330	-	759	148268117	-	SaurJH9_1694	-	bifunctional preprotein translocase subunit SecD/SecF
1671	 31.80	0	1798605..1798865	-	86	148268118	-	SaurJH9_1695	-	preprotein translocase, YajC subunit
1672	 35.70	0	1798884..1800023	-	379	148268119	tgt	SaurJH9_1696	-	queuine tRNA-ribosyltransferase
1673	 33.53	0	1800046..1801071	-	341	148268120	-	SaurJH9_1697	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1674	 37.11	+1	1801073..1802077	-	334	148268121	ruvB	SaurJH9_1698	-	Holliday junction DNA helicase B
1675	 33.50	0	1802109..1802711	-	200	148268122	-	SaurJH9_1699	-	Holliday junction DNA helicase RuvA
1676	 29.19	-1	1802725..1803183	-	152	148268123	-	SaurJH9_1700	-	hypothetical protein
1677	 36.50	+1	1803193..1804485	-	430	148268124	obgE	SaurJH9_1701	-	GTPase ObgE
1678	 38.25	+1	1804839..1805123	-	94	148268125	rpmA	SaurJH9_1702	-	50S ribosomal protein L27
1679	 33.96	0	1805135..1805455	-	106	148268126	-	SaurJH9_1703	-	hypothetical protein
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.