IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1536	 31.49	0	1662371..1662913	-	180	148267983	-	SaurJH9_1556	-	NUDIX hydrolase
1537	 32.12	0	1662995..1663903	+	302	148267984	-	SaurJH9_1557	-	aldo/keto reductase
1538	 33.33	0	1664119..1664373	-	84	148267985	-	SaurJH9_1558	-	hypothetical protein
1539	 33.73	0	1664383..1665138	-	251	148267986	-	SaurJH9_1559	-	short-chain dehydrogenase/reductase SDR
1540	 33.95	0	1665280..1666095	+	271	148267987	-	SaurJH9_1560	-	pyrroline-5-carboxylate reductase
1541	 33.44	0	1666198..1667118	-	306	148267988	-	SaurJH9_1561	-	ribonuclease Z
1542	 33.47	0	1667431..1668915	+	494	148267989	-	SaurJH9_1562	-	glucose-6-phosphate 1-dehydrogenase
1543	 33.56	0	1669118..1670011	+	297	148267990	-	SaurJH9_1563	-	transcription activator, effector binding
1544	 34.36	0	1670093..1671742	-	549	148267991	-	SaurJH9_1564	-	alpha-D-1,4-glucosidase
1545	 31.47	0	1671758..1672777	-	339	148267992	-	SaurJH9_1565	-	maltose operon transcriptional repressor
1546	 32.80	0	1672971..1673342	-	123	148267993	-	SaurJH9_1566	-	glyoxalase/bleomycin resistance protein/dioxygenase
1547	 28.41	-1	1673809..1675026	-	405	148267994	-	SaurJH9_1568	-	major facilitator transporter
1548	 33.83	0	1675342..1676748	-	468	148267995	-	SaurJH9_1569	-	6-phosphogluconate dehydrogenase
1549	 36.24	0	1676816..1677949	-	377	148267996	-	SaurJH9_1570	-	peptidase T-like protein
1550	 26.85	-1	1678284..1678391	+	35	148267997	-	SaurJH9_1571	-	hypothetical protein
1551	 29.87	0	1678518..1679498	-	326	148267998	-	SaurJH9_1572	-	hypothetical protein
1552	 36.30	0	1679512..1679949	-	145	148267999	-	SaurJH9_1573	-	hypothetical protein
1553	 32.94	0	1680300..1681574	-	424	148268000	-	SaurJH9_1574	-	dehydrogenase catalytic domain-containing protein
1554	 35.06	0	1681587..1682570	-	327	148268001	-	SaurJH9_1575	-	transketolase, central region
1555	 38.37	+1	1682570..1683562	-	330	148268002	-	SaurJH9_1576	-	3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring)
1556	 34.81	0	1683578..1684999	-	473	148268003	-	SaurJH9_1577	-	dihydrolipoamide dehydrogenase
1557	 30.77	0	1685150..1686829	-	559	148268004	-	SaurJH9_1578	-	DNA repair protein RecN
1558	 29.80	0	1686845..1687297	-	150	148268005	-	SaurJH9_1579	-	arginine repressor
1559	 34.58	0	1687729..1688610	-	293	148268006	-	SaurJH9_1580	-	polyprenyl synthetase
1560	 30.30	0	1688588..1688818	-	76	148268007	-	SaurJH9_1581	-	exodeoxyribonuclease VII, small subunit
1561	 31.17	0	1688811..1690148	-	445	148268008	xseA	SaurJH9_1582	-	exodeoxyribonuclease VII large subunit
1562	 29.49	-1	1690165..1690554	-	129	148268009	nusB	SaurJH9_1583	-	transcription antitermination protein NusB
1563	 29.20	-1	1690614..1690976	-	120	148268010	-	SaurJH9_1584	-	hypothetical protein
1564	 36.28	0	1690991..1692346	-	451	148268011	-	SaurJH9_1585	-	acetyl-CoA carboxylase biotin carboxylase subunit
1565	 35.05	0	1692346..1692810	-	154	148268012	-	SaurJH9_1586	-	acetyl-CoA carboxylase, biotin carboxyl carrier protein
1566	 33.15	0	1693284..1693841	-	185	148268013	-	SaurJH9_1587	-	elongation factor P
1567	 31.92	0	1693867..1694928	-	353	148268014	-	SaurJH9_1588	-	peptidase M24
1568	 27.49	-1	1695033..1695614	+	193	148268015	-	SaurJH9_1589	-	hypothetical protein
1569	 28.77	-1	1695628..1695846	+	72	148268016	-	SaurJH9_1590	-	hypothetical protein
1570	 34.78	0	1695910..1696740	-	276	148268017	-	SaurJH9_1591	-	biotin/lipoate A/B protein ligase
1571	 33.59	0	1696898..1697284	+	128	148268018	-	SaurJH9_1592	-	rhodanese domain-containing protein
1572	 34.56	0	1697649..1699121	-	490	148268019	-	SaurJH9_1593	-	glycine dehydrogenase subunit 2
1573	 34.22	0	1699114..1700460	-	448	148268020	-	SaurJH9_1594	-	glycine dehydrogenase subunit 1
1574	 31.32	0	1700480..1701571	-	363	148268021	-	SaurJH9_1595	-	glycine cleavage system aminomethyltransferase T
1575	 28.19	-1	1701730..1702254	-	174	148268022	-	SaurJH9_1596	-	shikimate kinase
1576	 25.90	-2	1702487..1702984	-	165	148268023	-	SaurJH9_1597	-	hypothetical protein
1577	 28.67	-1	1702902..1703201	-	99	148268024	-	SaurJH9_1598	-	hypothetical protein
1578	 25.52	-2	1703188..1703622	-	144	148268025	-	SaurJH9_1599	-	hypothetical protein
1579	 29.17	-1	1703612..1703923	-	103	148268026	-	SaurJH9_1600	-	competence protein ComGC-like protein
1580	 27.17	-1	1703937..1705007	-	356	148268027	-	SaurJH9_1601	-	type II secretion system protein
1581	 31.38	0	1704979..1705953	-	324	148268028	-	SaurJH9_1602	-	type II secretion system protein E
1582	 32.37	0	1706005..1706628	-	207	148268029	-	SaurJH9_1603	-	beta-lactamase domain-containing protein
1583	 31.21	0	1706625..1706954	-	109	148268030	-	SaurJH9_1604	-	hypothetical protein
1584	 34.55	0	1706954..1707940	-	328	148268031	-	SaurJH9_1605	-	ROK family glucokinase
1585	 26.47	-2	1707937..1708140	-	67	148268032	-	SaurJH9_1606	-	hypothetical protein
1586	 27.60	-1	1708121..1709584	-	487	148268033	-	SaurJH9_1607	-	rhomboid family protein
1587	 29.29	-1	1709596..1710189	-	197	148268034	-	SaurJH9_1608	-	5-formyltetrahydrofolate cyclo-ligase
1588	 34.00	0	1710344..1710493	-	49	148268035	rpmG	SaurJH9_1609	-	50S ribosomal protein L33
1589	 33.48	0	1710606..1712681	-	691	148268036	-	SaurJH9_1610	-	penicillin-binding protein 3
1590	 35.00	0	1712802..1713401	-	199	148268037	-	SaurJH9_1611	-	superoxide dismutase
1591	 28.71	-1	1713677..1714087	-	136	148268038	-	SaurJH9_1612	-	ferric uptake regulator family protein
1592	 31.84	0	1714074..1714946	-	290	148268039	-	SaurJH9_1613	-	ABC-3 protein
1593	 30.41	0	1714979..1715764	-	261	148268040	-	SaurJH9_1614	-	ABC transporter related
1594	 33.33	0	1715890..1716780	-	296	148268041	-	SaurJH9_1615	-	endonuclease IV
1595	 32.29	0	1716790..1718136	-	448	148268042	-	SaurJH9_1616	-	DEAD/DEAH box helicase domain-containing protein
1596	 31.06	0	1718250..1719350	-	366	148268043	-	SaurJH9_1617	-	hypothetical protein
1597	 31.86	0	1719353..1720030	-	225	148268044	-	SaurJH9_1618	-	hypothetical protein
1598	 33.69	0	1720161..1721267	-	368	148268045	-	SaurJH9_1619	-	RNA polymerase sigma factor RpoD
1599	 31.96	0	1721491..1723308	-	605	148268046	-	SaurJH9_1620	-	DNA primase
1600	 32.84	0	1723369..1724187	-	272	148268047	-	SaurJH9_1621	-	hypothetical protein
1601	 30.37	0	1724198..1724737	-	179	148268048	-	SaurJH9_1622	-	CBS domain-containing protein
1602	 34.34	0	1725156..1726547	+	463	148268049	-	SaurJH9_1623	-	glycyl-tRNA synthetase
1603	 32.66	0	1726697..1727443	-	248	148268050	-	SaurJH9_1624	-	DNA repair protein RecO
1604	 33.00	0	1727471..1728370	-	299	148268051	era	SaurJH9_1625	-	GTP-binding protein Era
1605	 35.31	0	1728371..1728775	-	134	148268052	-	SaurJH9_1626	-	cytidine deaminase
1606	 28.70	-1	1728786..1729130	-	114	148268053	-	SaurJH9_1627	-	diacylglycerol kinase
1607	 32.48	0	1729133..1729600	-	155	148268054	-	SaurJH9_1628	-	hypothetical protein
1608	 35.13	0	1729601..1730548	-	315	148268055	-	SaurJH9_1629	-	PhoH family protein
1609	 32.19	0	1730852..1731550	-	232	148268056	-	SaurJH9_1630	-	hypothetical protein
1610	 37.07	+1	1731567..1732556	-	329	148268057	-	SaurJH9_1631	-	hypothetical protein
1611	 32.49	0	1732574..1733281	-	235	148268058	-	SaurJH9_1632	-	hypothetical protein
1612	 32.20	0	1733501..1733677	-	58	148268059	rpsU	SaurJH9_1633	-	30S ribosomal protein S21
1613	 34.60	0	1733970..1735316	-	448	148268060	-	SaurJH9_1634	-	RNA modification protein
1614	 31.74	0	1735323..1736075	-	250	148268061	-	SaurJH9_1635	-	hypothetical protein
1615	 34.19	0	1736077..1737015	-	312	148268062	-	SaurJH9_1636	-	ribosomal protein L11 methyltransferase
1616	 35.70	0	1737019..1738158	-	379	148268063	-	SaurJH9_1637	-	chaperone protein DnaJ
1617	 35.52	0	1738294..1740126	-	610	148268064	-	SaurJH9_1638	-	chaperone protein DnaK
1618	 31.10	0	1740195..1740821	-	208	148268065	-	SaurJH9_1639	-	GrpE protein
1619	 28.43	-1	1740853..1741830	-	325	148268066	-	SaurJH9_1640	-	heat-inducible transcription repressor HrcA
1620	 32.36	0	1741931..1743055	-	374	148268067	-	SaurJH9_1641	-	coproporphyrinogen III oxidase
1621	 33.88	0	1743621..1745444	-	607	148268068	-	SaurJH9_1642	-	GTP-binding protein LepA
1622	 31.35	0	1745790..1746041	+	83	148268069	rpsT	SaurJH9_1643	-	30S ribosomal protein S20
1623	 27.08	-1	1746086..1747060	-	324	148268070	holA	SaurJH9_1644	-	DNA polymerase III subunit delta
1624	 28.11	-1	1747117..1749297	-	726	148268071	-	SaurJH9_1645	-	DNA internalization-related competence protein ComEC/Rec2
1625	 33.56	0	1749323..1749754	-	143	148268072	-	SaurJH9_1646	-	ComE operon protein 2
1626	 29.35	-1	1749876..1750553	-	225	148268073	-	SaurJH9_1647	-	helix-hairpin-helix repeat-containing competence protein ComEA
1627	 30.13	0	1750602..1751318	-	238	148268074	-	SaurJH9_1648	-	hypothetical protein
1628	 33.33	0	1751321..1751674	-	117	148268075	-	SaurJH9_1649	-	hypothetical protein
1629	 31.97	0	1751675..1752259	-	194	148268076	-	SaurJH9_1650	-	hypothetical protein
1630	 34.21	0	1752249..1752818	-	189	148268077	-	SaurJH9_1651	-	nicotinate (nicotinamide) nucleotide adenylyltransferase
1631	 29.21	-1	1752821..1753111	-	96	148268078	-	SaurJH9_1652	-	hypothetical protein
1632	 31.35	0	1753115..1753921	-	268	148268079	-	SaurJH9_1653	-	shikimate 5-dehydrogenase
1633	 33.70	0	1753935..1755035	-	366	148268080	-	SaurJH9_1654	-	GTP-binding protein YqeH
1634	 32.95	0	1755036..1755563	-	175	148268081	-	SaurJH9_1655	-	HAD family phosphatase
1635	 33.19	0	1755583..1756269	-	228	148268082	-	SaurJH9_1656	-	adenosylhomocysteine nucleosidase
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.