IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1469	 34.84	0	1559081..1560205	-	374	148267916	-	SaurJH9_1489	-	HEAT repeat-containing PBS lyase
1470	 32.94	0	1560243..1560494	-	83	148267917	-	SaurJH9_1490	-	hypothetical protein
1471	 33.85	0	1560506..1560700	-	64	148267918	-	SaurJH9_1491	-	hypothetical protein
1472	 30.35	0	1560945..1561649	+	234	148267919	-	SaurJH9_1492	-	hypothetical protein
1473	 45.42	+2	1561677..1561916	-	79	148267920	-	SaurJH9_1493	-	hypothetical protein
1474	 32.34	0	1562248..1562649	+	133	148267921	-	SaurJH9_1494	-	ribonuclease HI-like protein
1475	 35.93	0	1562708..1594582	-	10624	148267922	-	SaurJH9_1495	-	hypothetical protein
1476	 32.97	0	1594980..1596371	-	463	148267923	-	SaurJH9_1496	-	major facilitator transporter
1477	 34.16	0	1596527..1597849	-	440	148267924	-	SaurJH9_1497	-	amino acid permease-associated region
1478	 35.06	0	1597880..1598920	-	346	148267925	-	SaurJH9_1498	-	threonine dehydratase
1479	 35.48	0	1599015..1600133	-	372	148267926	-	SaurJH9_1499	-	alanine dehydrogenase
1480	 32.31	0	1600609..1601487	-	292	148267927	-	SaurJH9_1500	-	5'-3' exonuclease
1481	 30.34	0	1601507..1604947	-	1146	148267928	-	SaurJH9_1501	-	hypothetical protein
1482	 32.59	0	1605251..1606591	+	446	148267929	-	SaurJH9_1502	-	peptidase
1483	 29.43	-1	1606797..1607129	-	110	148267930	-	SaurJH9_1503	-	hypothetical protein
1484	 35.69	0	1607213..1608358	-	381	148267931	-	SaurJH9_1504	-	hypothetical protein
1485	 27.25	-1	1609009..1609353	-	114	148267932	-	SaurJH9_1505	-	hypothetical protein
1486	 31.74	0	1609367..1609930	-	187	148267933	-	SaurJH9_1506	-	hypothetical protein
1487	 29.34	-1	1609923..1610273	-	116	148267934	-	SaurJH9_1507	-	hypothetical protein
1488	 32.06	0	1610813..1611439	+	208	148267935	recU	SaurJH9_1508	-	Holliday junction-specific endonuclease
1489	 35.49	0	1611436..1613619	+	727	148267936	-	SaurJH9_1509	-	glycosyl transferase family protein
1490	 27.49	-1	1614185..1614526	-	113	148267937	-	SaurJH9_1510	-	hypothetical protein
1491	 34.39	0	1614531..1615190	-	219	148267938	-	SaurJH9_1511	-	endonuclease III
1492	 30.57	0	1615180..1615866	-	228	148267939	-	SaurJH9_1512	-	primosome, DnaD subunit
1493	 35.58	0	1616194..1617486	-	430	148267940	asnC	SaurJH9_1513	-	asparaginyl-tRNA synthetase
1494	 29.96	0	1617808..1620501	-	897	148267941	-	SaurJH9_1514	-	DnaQ family exonuclease/DinG family helicase
1495	 30.45	0	1620525..1621496	-	323	148267942	-	SaurJH9_1515	-	biotin--acetyl-CoA-carboxylase ligase
1496	 31.84	0	1621483..1622685	-	400	162036297	-	SaurJH9_1516	-	tRNA CCA-pyrophosphorylase
1497	 32.90	0	1622690..1623832	-	380	148267944	-	SaurJH9_1517	-	glycosyl transferase, group 1
1498	 31.45	0	1624076..1624393	-	105	148267945	-	SaurJH9_1518	-	hypothetical protein
1499	 36.62	+1	1624729..1625427	-	232	148267946	-	SaurJH9_1519	-	hypothetical protein
1500	 28.91	-1	1625481..1626068	-	195	148267947	-	SaurJH9_1520	-	hypothetical protein
1501	 30.38	0	1626058..1626633	-	191	148267948	-	SaurJH9_1521	-	hypothetical protein
1502	 30.92	0	1626647..1627891	-	414	148267949	-	SaurJH9_1522	-	TPR repeat-containing protein
1503	 34.33	0	1627898..1629196	-	432	148267950	-	SaurJH9_1523	-	3-phosphoshikimate 1-carboxyvinyltransferase
1504	 32.58	0	1629206..1630270	-	354	148267951	-	SaurJH9_1524	-	3-dehydroquinate synthase
1505	 35.30	0	1630296..1631462	-	388	148267952	-	SaurJH9_1525	-	chorismate synthase
1506	 34.67	0	1632257..1632706	-	149	148267953	-	SaurJH9_1526	-	nucleoside-diphosphate kinase
1507	 34.69	0	1632798..1633757	-	319	148267954	-	SaurJH9_1527	-	polyprenyl synthetase
1508	 34.16	0	1633759..1634484	-	241	148267955	ubiE	SaurJH9_1528	-	ubiquinone/menaquinone biosynthesis methyltransferase
1509	 27.57	-1	1634487..1635059	-	190	148267956	-	SaurJH9_1529	-	hypothetical protein
1510	 36.63	+1	1635490..1635762	-	90	148267957	-	SaurJH9_1530	-	histone family protein DNA-binding protein
1511	 34.33	0	1635933..1636931	-	332	148267958	-	SaurJH9_1531	-	glycerol-3-phosphate dehydrogenase (NAD(P)(+))
1512	 35.24	0	1636948..1638258	-	436	148267959	engA	SaurJH9_1532	-	GTP-binding protein EngA
1513	 33.76	0	1638480..1639655	-	391	148267960	rpsA	SaurJH9_1533	-	30S ribosomal protein S1
1514	 34.70	0	1640367..1641026	-	219	148267961	-	SaurJH9_1534	-	cytidylate kinase
1515	 34.78	0	1641103..1642071	+	322	148267962	-	SaurJH9_1535	-	asparaginase/glutaminase
1516	 33.23	0	1642186..1643172	-	328	148267963	-	SaurJH9_1536	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1517	 36.69	+1	1643574..1645034	-	486	148267964	-	SaurJH9_1537	-	peptidoglycan-binding LysM
1518	 33.77	0	1645187..1646566	-	459	148267965	-	SaurJH9_1538	-	ATP-dependent DNA helicase RecQ
1519	 28.09	-1	1646556..1647509	-	317	148267966	-	SaurJH9_1539	-	hypothetical protein
1520	 38.55	+1	1647617..1647865	+	82	148267967	-	SaurJH9_1540	-	ferredoxin
1521	 32.60	0	1647971..1648516	-	181	148267968	-	SaurJH9_1541	-	hypothetical protein
1522	 30.83	0	1648918..1649874	-	318	148267969	-	SaurJH9_1542	-	hypothetical protein
1523	 27.45	-1	1650015..1650269	-	84	148267970	-	SaurJH9_1543	-	hypothetical protein
1524	 30.10	0	1650345..1651241	-	298	148267971	-	SaurJH9_1544	-	hypothetical protein
1525	 31.35	0	1651299..1652204	-	301	148267972	-	SaurJH9_1545	-	hypothetical protein
1526	 29.68	-1	1652294..1654456	-	720	148267973	-	SaurJH9_1546	-	hypothetical protein
1527	 31.18	0	1654449..1655375	-	308	148267974	-	SaurJH9_1547	-	hypothetical protein
1528	 32.99	0	1655619..1657370	-	583	148267975	-	SaurJH9_1548	-	integral membrane sensor signal transduction histidine kinase
1529	 34.57	0	1657351..1658076	-	241	148267976	-	SaurJH9_1549	-	two component transcriptional regulator
1530	 33.88	0	1658209..1658946	-	245	148267977	-	SaurJH9_1550	-	ribosomal large subunit pseudouridine synthase B
1531	 31.49	0	1658939..1659481	-	180	148267978	-	SaurJH9_1551	-	putative transcriptional regulator
1532	 30.19	0	1659474..1660205	-	243	148267979	-	SaurJH9_1552	-	hypothetical protein
1533	 32.74	0	1660297..1660803	+	168	148267980	-	SaurJH9_1553	-	hypothetical protein
1534	 33.33	0	1660881..1661768	-	295	148267981	-	SaurJH9_1554	-	tyrosine recombinase XerD
1535	 36.00	0	1661817..1662266	-	149	148267982	-	SaurJH9_1555	-	ferric uptake regulator family protein
1536	 31.49	0	1662371..1662913	-	180	148267983	-	SaurJH9_1556	-	NUDIX hydrolase
1537	 32.12	0	1662995..1663903	+	302	148267984	-	SaurJH9_1557	-	aldo/keto reductase
1538	 33.33	0	1664119..1664373	-	84	148267985	-	SaurJH9_1558	-	hypothetical protein
1539	 33.73	0	1664383..1665138	-	251	148267986	-	SaurJH9_1559	-	short-chain dehydrogenase/reductase SDR
1540	 33.95	0	1665280..1666095	+	271	148267987	-	SaurJH9_1560	-	pyrroline-5-carboxylate reductase
1541	 33.44	0	1666198..1667118	-	306	148267988	-	SaurJH9_1561	-	ribonuclease Z
1542	 33.47	0	1667431..1668915	+	494	148267989	-	SaurJH9_1562	-	glucose-6-phosphate 1-dehydrogenase
1543	 33.56	0	1669118..1670011	+	297	148267990	-	SaurJH9_1563	-	transcription activator, effector binding
1544	 34.36	0	1670093..1671742	-	549	148267991	-	SaurJH9_1564	-	alpha-D-1,4-glucosidase
1545	 31.47	0	1671758..1672777	-	339	148267992	-	SaurJH9_1565	-	maltose operon transcriptional repressor
1546	 32.80	0	1672971..1673342	-	123	148267993	-	SaurJH9_1566	-	glyoxalase/bleomycin resistance protein/dioxygenase
1547	 28.41	-1	1673809..1675026	-	405	148267994	-	SaurJH9_1568	-	major facilitator transporter
1548	 33.83	0	1675342..1676748	-	468	148267995	-	SaurJH9_1569	-	6-phosphogluconate dehydrogenase
1549	 36.24	0	1676816..1677949	-	377	148267996	-	SaurJH9_1570	-	peptidase T-like protein
1550	 26.85	-1	1678284..1678391	+	35	148267997	-	SaurJH9_1571	-	hypothetical protein
1551	 29.87	0	1678518..1679498	-	326	148267998	-	SaurJH9_1572	-	hypothetical protein
1552	 36.30	0	1679512..1679949	-	145	148267999	-	SaurJH9_1573	-	hypothetical protein
1553	 32.94	0	1680300..1681574	-	424	148268000	-	SaurJH9_1574	-	dehydrogenase catalytic domain-containing protein
1554	 35.06	0	1681587..1682570	-	327	148268001	-	SaurJH9_1575	-	transketolase, central region
1555	 38.37	+1	1682570..1683562	-	330	148268002	-	SaurJH9_1576	-	3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring)
1556	 34.81	0	1683578..1684999	-	473	148268003	-	SaurJH9_1577	-	dihydrolipoamide dehydrogenase
1557	 30.77	0	1685150..1686829	-	559	148268004	-	SaurJH9_1578	-	DNA repair protein RecN
1558	 29.80	0	1686845..1687297	-	150	148268005	-	SaurJH9_1579	-	arginine repressor
1559	 34.58	0	1687729..1688610	-	293	148268006	-	SaurJH9_1580	-	polyprenyl synthetase
1560	 30.30	0	1688588..1688818	-	76	148268007	-	SaurJH9_1581	-	exodeoxyribonuclease VII, small subunit
1561	 31.17	0	1688811..1690148	-	445	148268008	xseA	SaurJH9_1582	-	exodeoxyribonuclease VII large subunit
1562	 29.49	-1	1690165..1690554	-	129	148268009	nusB	SaurJH9_1583	-	transcription antitermination protein NusB
1563	 29.20	-1	1690614..1690976	-	120	148268010	-	SaurJH9_1584	-	hypothetical protein
1564	 36.28	0	1690991..1692346	-	451	148268011	-	SaurJH9_1585	-	acetyl-CoA carboxylase biotin carboxylase subunit
1565	 35.05	0	1692346..1692810	-	154	148268012	-	SaurJH9_1586	-	acetyl-CoA carboxylase, biotin carboxyl carrier protein
1566	 33.15	0	1693284..1693841	-	185	148268013	-	SaurJH9_1587	-	elongation factor P
1567	 31.92	0	1693867..1694928	-	353	148268014	-	SaurJH9_1588	-	peptidase M24
1568	 27.49	-1	1695033..1695614	+	193	148268015	-	SaurJH9_1589	-	hypothetical protein
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.