IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1441	 33.57	0	1531310..1532575	+	421	148267888	-	SaurJH9_1461	-	diaminopimelate decarboxylase
1442	 22.14	-2	1532815..1533216	-	133	148267889	-	SaurJH9_1462	-	hypothetical protein
1443	 37.81	+1	1533413..1533613	-	66	148267890	-	SaurJH9_1463	-	cold-shock DNA-binding domain-containing protein
1444	 27.51	-1	1533784..1534092	-	102	148267891	-	SaurJH9_1464	-	hypothetical protein
1445	 35.56	0	1534255..1534524	+	89	148267892	-	SaurJH9_1465	-	acylphosphatase
1446	 30.00	0	1534543..1535172	+	209	148267893	-	SaurJH9_1466	-	hypothetical protein
1447	 32.63	0	1535204..1536340	+	378	148267894	-	SaurJH9_1467	-	toxic anion resistance family protein
1448	 32.22	0	1536413..1537756	-	447	148267895	-	SaurJH9_1468	-	branched-chain amino acid transport system II carrier protein
1449	 31.69	0	1537981..1539867	-	628	148267896	-	SaurJH9_1469	-	hypothetical protein
1450	 31.82	0	1539881..1540672	-	263	148267897	-	SaurJH9_1470	-	ATPase
1451	 29.41	-1	1540853..1541056	-	67	148267898	-	SaurJH9_1471	-	hypothetical protein
1452	 34.94	0	1541085..1541894	-	269	148267899	-	SaurJH9_1472	-	hypothetical protein
1453	 34.20	0	1542474..1543742	-	422	148267900	-	SaurJH9_1473	-	dihydrolipoamide acetyltransferase
1454	 35.91	0	1543756..1546554	-	932	148267901	kgd	SaurJH9_1474	-	alpha-ketoglutarate decarboxylase
1455	 29.20	-1	1546838..1548193	-	451	148267902	-	SaurJH9_1475	-	integral membrane sensor signal transduction histidine kinase
1456	 33.18	0	1548190..1548849	-	219	148267903	-	SaurJH9_1476	-	two component transcriptional regulator
1457	 32.36	0	1549638..1550252	-	204	148267904	-	SaurJH9_1477	-	hypothetical protein
1458	 29.79	-1	1550269..1551339	-	356	148267905	murG	SaurJH9_1478	-	N-acetylglucosaminyl transferase
1459	 33.73	0	1551351..1551860	-	169	148267906	-	SaurJH9_1479	-	GCN5-related N-acetyltransferase
1460	 31.32	0	1552260..1553750	-	496	148267907	-	SaurJH9_1480	-	carboxyl-terminal protease
1461	 33.78	0	1553942..1554163	-	73	148267908	-	SaurJH9_1481	-	hypothetical protein
1462	 33.93	0	1554163..1554663	-	166	148267909	-	SaurJH9_1482	-	PTS system, glucose subfamily, IIA subunit
1463	 32.17	0	1554675..1555103	-	142	148267910	-	SaurJH9_1483	-	methionine sulfoxide reductase B
1464	 35.58	0	1555096..1555629	-	177	148267911	-	SaurJH9_1484	-	methionine sulfoxide reductase A
1465	 31.67	0	1555715..1556554	-	279	148267912	-	SaurJH9_1485	-	hypothetical protein
1466	 34.38	0	1556569..1557048	-	159	148267913	-	SaurJH9_1486	-	dihydrofolate reductase
1467	 33.65	0	1557248..1558204	-	318	148267914	thyA	SaurJH9_1487	-	thymidylate synthase
1468	 36.99	+1	1558628..1559065	-	145	148267915	-	SaurJH9_1488	-	hypothetical protein
1469	 34.84	0	1559081..1560205	-	374	148267916	-	SaurJH9_1489	-	HEAT repeat-containing PBS lyase
1470	 32.94	0	1560243..1560494	-	83	148267917	-	SaurJH9_1490	-	hypothetical protein
1471	 33.85	0	1560506..1560700	-	64	148267918	-	SaurJH9_1491	-	hypothetical protein
1472	 30.35	0	1560945..1561649	+	234	148267919	-	SaurJH9_1492	-	hypothetical protein
1473	 45.42	+2	1561677..1561916	-	79	148267920	-	SaurJH9_1493	-	hypothetical protein
1474	 32.34	0	1562248..1562649	+	133	148267921	-	SaurJH9_1494	-	ribonuclease HI-like protein
1475	 35.93	0	1562708..1594582	-	10624	148267922	-	SaurJH9_1495	-	hypothetical protein
1476	 32.97	0	1594980..1596371	-	463	148267923	-	SaurJH9_1496	-	major facilitator transporter
1477	 34.16	0	1596527..1597849	-	440	148267924	-	SaurJH9_1497	-	amino acid permease-associated region
1478	 35.06	0	1597880..1598920	-	346	148267925	-	SaurJH9_1498	-	threonine dehydratase
1479	 35.48	0	1599015..1600133	-	372	148267926	-	SaurJH9_1499	-	alanine dehydrogenase
1480	 32.31	0	1600609..1601487	-	292	148267927	-	SaurJH9_1500	-	5'-3' exonuclease
1481	 30.34	0	1601507..1604947	-	1146	148267928	-	SaurJH9_1501	-	hypothetical protein
1482	 32.59	0	1605251..1606591	+	446	148267929	-	SaurJH9_1502	-	peptidase
1483	 29.43	-1	1606797..1607129	-	110	148267930	-	SaurJH9_1503	-	hypothetical protein
1484	 35.69	0	1607213..1608358	-	381	148267931	-	SaurJH9_1504	-	hypothetical protein
1485	 27.25	-1	1609009..1609353	-	114	148267932	-	SaurJH9_1505	-	hypothetical protein
1486	 31.74	0	1609367..1609930	-	187	148267933	-	SaurJH9_1506	-	hypothetical protein
1487	 29.34	-1	1609923..1610273	-	116	148267934	-	SaurJH9_1507	-	hypothetical protein
1488	 32.06	0	1610813..1611439	+	208	148267935	recU	SaurJH9_1508	-	Holliday junction-specific endonuclease
1489	 35.49	0	1611436..1613619	+	727	148267936	-	SaurJH9_1509	-	glycosyl transferase family protein
1490	 27.49	-1	1614185..1614526	-	113	148267937	-	SaurJH9_1510	-	hypothetical protein
1491	 34.39	0	1614531..1615190	-	219	148267938	-	SaurJH9_1511	-	endonuclease III
1492	 30.57	0	1615180..1615866	-	228	148267939	-	SaurJH9_1512	-	primosome, DnaD subunit
1493	 35.58	0	1616194..1617486	-	430	148267940	asnC	SaurJH9_1513	-	asparaginyl-tRNA synthetase
1494	 29.96	0	1617808..1620501	-	897	148267941	-	SaurJH9_1514	-	DnaQ family exonuclease/DinG family helicase
1495	 30.45	0	1620525..1621496	-	323	148267942	-	SaurJH9_1515	-	biotin--acetyl-CoA-carboxylase ligase
1496	 31.84	0	1621483..1622685	-	400	162036297	-	SaurJH9_1516	-	tRNA CCA-pyrophosphorylase
1497	 32.90	0	1622690..1623832	-	380	148267944	-	SaurJH9_1517	-	glycosyl transferase, group 1
1498	 31.45	0	1624076..1624393	-	105	148267945	-	SaurJH9_1518	-	hypothetical protein
1499	 36.62	+1	1624729..1625427	-	232	148267946	-	SaurJH9_1519	-	hypothetical protein
1500	 28.91	-1	1625481..1626068	-	195	148267947	-	SaurJH9_1520	-	hypothetical protein
1501	 30.38	0	1626058..1626633	-	191	148267948	-	SaurJH9_1521	-	hypothetical protein
1502	 30.92	0	1626647..1627891	-	414	148267949	-	SaurJH9_1522	-	TPR repeat-containing protein
1503	 34.33	0	1627898..1629196	-	432	148267950	-	SaurJH9_1523	-	3-phosphoshikimate 1-carboxyvinyltransferase
1504	 32.58	0	1629206..1630270	-	354	148267951	-	SaurJH9_1524	-	3-dehydroquinate synthase
1505	 35.30	0	1630296..1631462	-	388	148267952	-	SaurJH9_1525	-	chorismate synthase
1506	 34.67	0	1632257..1632706	-	149	148267953	-	SaurJH9_1526	-	nucleoside-diphosphate kinase
1507	 34.69	0	1632798..1633757	-	319	148267954	-	SaurJH9_1527	-	polyprenyl synthetase
1508	 34.16	0	1633759..1634484	-	241	148267955	ubiE	SaurJH9_1528	-	ubiquinone/menaquinone biosynthesis methyltransferase
1509	 27.57	-1	1634487..1635059	-	190	148267956	-	SaurJH9_1529	-	hypothetical protein
1510	 36.63	+1	1635490..1635762	-	90	148267957	-	SaurJH9_1530	-	histone family protein DNA-binding protein
1511	 34.33	0	1635933..1636931	-	332	148267958	-	SaurJH9_1531	-	glycerol-3-phosphate dehydrogenase (NAD(P)(+))
1512	 35.24	0	1636948..1638258	-	436	148267959	engA	SaurJH9_1532	-	GTP-binding protein EngA
1513	 33.76	0	1638480..1639655	-	391	148267960	rpsA	SaurJH9_1533	-	30S ribosomal protein S1
1514	 34.70	0	1640367..1641026	-	219	148267961	-	SaurJH9_1534	-	cytidylate kinase
1515	 34.78	0	1641103..1642071	+	322	148267962	-	SaurJH9_1535	-	asparaginase/glutaminase
1516	 33.23	0	1642186..1643172	-	328	148267963	-	SaurJH9_1536	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1517	 36.69	+1	1643574..1645034	-	486	148267964	-	SaurJH9_1537	-	peptidoglycan-binding LysM
1518	 33.77	0	1645187..1646566	-	459	148267965	-	SaurJH9_1538	-	ATP-dependent DNA helicase RecQ
1519	 28.09	-1	1646556..1647509	-	317	148267966	-	SaurJH9_1539	-	hypothetical protein
1520	 38.55	+1	1647617..1647865	+	82	148267967	-	SaurJH9_1540	-	ferredoxin
1521	 32.60	0	1647971..1648516	-	181	148267968	-	SaurJH9_1541	-	hypothetical protein
1522	 30.83	0	1648918..1649874	-	318	148267969	-	SaurJH9_1542	-	hypothetical protein
1523	 27.45	-1	1650015..1650269	-	84	148267970	-	SaurJH9_1543	-	hypothetical protein
1524	 30.10	0	1650345..1651241	-	298	148267971	-	SaurJH9_1544	-	hypothetical protein
1525	 31.35	0	1651299..1652204	-	301	148267972	-	SaurJH9_1545	-	hypothetical protein
1526	 29.68	-1	1652294..1654456	-	720	148267973	-	SaurJH9_1546	-	hypothetical protein
1527	 31.18	0	1654449..1655375	-	308	148267974	-	SaurJH9_1547	-	hypothetical protein
1528	 32.99	0	1655619..1657370	-	583	148267975	-	SaurJH9_1548	-	integral membrane sensor signal transduction histidine kinase
1529	 34.57	0	1657351..1658076	-	241	148267976	-	SaurJH9_1549	-	two component transcriptional regulator
1530	 33.88	0	1658209..1658946	-	245	148267977	-	SaurJH9_1550	-	ribosomal large subunit pseudouridine synthase B
1531	 31.49	0	1658939..1659481	-	180	148267978	-	SaurJH9_1551	-	putative transcriptional regulator
1532	 30.19	0	1659474..1660205	-	243	148267979	-	SaurJH9_1552	-	hypothetical protein
1533	 32.74	0	1660297..1660803	+	168	148267980	-	SaurJH9_1553	-	hypothetical protein
1534	 33.33	0	1660881..1661768	-	295	148267981	-	SaurJH9_1554	-	tyrosine recombinase XerD
1535	 36.00	0	1661817..1662266	-	149	148267982	-	SaurJH9_1555	-	ferric uptake regulator family protein
1536	 31.49	0	1662371..1662913	-	180	148267983	-	SaurJH9_1556	-	NUDIX hydrolase
1537	 32.12	0	1662995..1663903	+	302	148267984	-	SaurJH9_1557	-	aldo/keto reductase
1538	 33.33	0	1664119..1664373	-	84	148267985	-	SaurJH9_1558	-	hypothetical protein
1539	 33.73	0	1664383..1665138	-	251	148267986	-	SaurJH9_1559	-	short-chain dehydrogenase/reductase SDR
1540	 33.95	0	1665280..1666095	+	271	148267987	-	SaurJH9_1560	-	pyrroline-5-carboxylate reductase
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.