IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1334	 30.61	0	1412450..1412743	+	97	148267781	-	SaurJH9_1351	-	hypothetical protein
1335	 32.82	0	1412877..1414421	+	514	148267782	-	SaurJH9_1352	-	tRNA-i(6)A37 thiotransferase enzyme MiaB
1336	 29.78	-1	1414422..1414787	+	121	148267783	-	SaurJH9_1353	-	hypothetical protein
1337	 34.15	0	1414814..1415305	+	163	148267784	-	SaurJH9_1354	-	hypothetical protein
1338	 32.19	0	1415608..1418226	+	872	148267785	-	SaurJH9_1355	-	DNA mismatch repair protein
1339	 29.10	-1	1420255..1420797	+	180	148267786	-	SaurJH9_1357	-	glycerol uptake operon antiterminator regulatory protein
1340	 37.73	+1	1421272..1422090	+	272	148267787	-	SaurJH9_1358	-	MIP family channel protein
1341	 36.34	0	1422219..1423715	+	498	148267788	glpK	SaurJH9_1359	-	glycerol kinase
1342	 34.26	0	1423825..1425546	+	573	148267789	-	SaurJH9_1360	-	aerobic glycerol-3-phosphate dehydrogenase
1343	 30.17	0	1425693..1426610	+	305	148267790	-	SaurJH9_1361	-	alpha/beta hydrolase fold
1344	 31.84	0	1426628..1427563	+	311	148267791	-	SaurJH9_1362	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1345	 34.19	0	1427578..1427811	+	77	148267792	-	SaurJH9_1363	-	RNA chaperone Hfq
1346	 33.33	0	1428033..1428509	-	158	148267793	-	SaurJH9_1364	-	glutathione peroxidase
1347	 31.56	0	1428621..1429859	+	412	148267794	-	SaurJH9_1365	-	GTP-binding protein, HSR1-related
1348	 35.11	0	1429878..1431116	+	412	148267795	-	SaurJH9_1366	-	hypothetical protein
1349	 32.52	0	1431359..1431727	+	122	148267796	-	SaurJH9_1367	-	MerR family transcriptional regulator
1350	 35.05	0	1431746..1433086	+	446	148267797	-	SaurJH9_1368	-	glutamine synthetase, type I
1351	 23.47	-2	1434475..1434687	+	70	148267798	-	SaurJH9_1369	-	hypothetical protein
1352	 23.67	-2	1434981..1435187	+	68	148267799	-	SaurJH9_1370	-	hypothetical protein
1353	 26.88	-1	1436421..1436606	+	61	148267800	-	SaurJH9_1371	-	hypothetical protein
1354	 25.71	-2	1437117..1437221	+	34	148267801	-	SaurJH9_1372	-	hypothetical protein
1355	 25.40	-2	1437349..1437600	+	83	148267802	-	SaurJH9_1373	-	hypothetical protein
1356	 21.54	-2	1438323..1438517	+	64	148267803	-	SaurJH9_1376	-	hypothetical protein
1357	 33.62	0	1439061..1440116	-	351	148267804	-	SaurJH9_1377	-	hypothetical protein
1358	 22.22	-2	1440356..1440553	+	65	148267805	-	SaurJH9_1378	-	hypothetical protein
1359	 31.55	0	1440574..1442091	+	505	148267806	-	SaurJH9_1379	-	phospholipase D/transphosphatidylase
1360	 27.00	-1	1442275..1443174	+	299	148267807	-	SaurJH9_1380	-	ABC transporter related
1361	 27.87	-1	1443143..1443874	+	243	148267808	-	SaurJH9_1381	-	ABC-2 type transporter
1362	 26.65	-1	1443878..1444969	+	363	148267809	-	SaurJH9_1382	-	integral membrane sensor signal transduction histidine kinase
1363	 29.85	0	1444966..1445568	+	200	148267810	-	SaurJH9_1383	-	two component LuxR family transcriptional regulator
1364	 26.98	-1	1445681..1445869	-	62	148267811	-	SaurJH9_1384	-	hypothetical protein
1365	 31.94	0	1445969..1446541	+	190	148267812	-	SaurJH9_1385	-	thermonuclease
1366	 29.24	-1	1446686..1447540	-	284	148267813	-	SaurJH9_1386	-	hypothetical protein
1367	 29.74	-1	1447862..1448446	+	194	148267814	-	SaurJH9_1387	-	hypothetical protein
1368	 31.45	0	1448500..1449882	-	460	148267815	-	SaurJH9_1388	-	aspartate kinase
1369	 32.47	0	1450073..1451353	+	426	148267816	-	SaurJH9_1389	-	homoserine dehydrogenase
1370	 34.93	0	1451359..1452420	+	353	148267817	-	SaurJH9_1390	-	threonine synthase
1371	 35.96	0	1452422..1453336	+	304	148267818	-	SaurJH9_1391	-	homoserine kinase
1372	 33.58	0	1453394..1454197	+	267	148267819	-	SaurJH9_1392	-	Cof-like hydrolase
1373	 30.48	0	1454490..1454804	-	104	148267820	-	SaurJH9_1393	-	hypothetical protein
1374	 33.20	0	1455022..1456476	-	484	148267821	-	SaurJH9_1394	-	amino acid permease-associated region
1375	 36.10	0	1456680..1458197	+	505	148267822	-	SaurJH9_1395	-	catalase
1376	 33.33	0	1458288..1458437	+	49	148267823	rpmG	SaurJH9_1396	-	50S ribosomal protein L33
1377	 32.59	0	1458891..1459160	+	89	148267824	rpsN	SaurJH9_1397	-	30S ribosomal protein S14
1378	 33.54	0	1459317..1460294	+	325	148267825	-	SaurJH9_1398	-	guanosine 5'-monophosphate oxidoreductase
1379	 28.70	-1	1460469..1461332	+	287	148267826	-	SaurJH9_1399	-	SCP-like extracellular
1380	 35.90	0	1461712..1462335	-	207	148267827	-	SaurJH9_1400	-	LexA repressor
1381	 31.41	0	1462400..1462711	+	103	148267828	-	SaurJH9_1401	-	hypothetical protein
1382	 27.50	-1	1462848..1463087	+	79	148267829	-	SaurJH9_1402	-	hypothetical protein
1383	 36.00	0	1463208..1465196	+	662	148267830	-	SaurJH9_1403	-	transketolase
1384	 31.25	0	1465429..1465716	+	95	148267831	-	SaurJH9_1404	-	hypothetical protein
1385	 26.26	-2	1465703..1465801	+	32	148267832	-	SaurJH9_1405	-	hypothetical protein
1386	 31.20	0	1465895..1466362	+	155	148267833	-	SaurJH9_1406	-	hypothetical protein
1387	 30.57	0	1466486..1467607	+	373	148267834	-	SaurJH9_1407	-	nuclease SbcCD, D subunit
1388	 28.51	-1	1467611..1470640	+	1009	148267835	-	SaurJH9_1408	-	ATPase involved in DNA repair-like protein
1389	 31.40	0	1470711..1471073	-	120	148267836	-	SaurJH9_1409	-	large conductance mechanosensitive channel protein
1390	 35.82	0	1471277..1472923	+	548	148267837	-	SaurJH9_1410	-	choline/carnitine/betaine transporter
1391	 44.97	+2	1473392..1473580	+	62	148267838	-	SaurJH9_1411	-	hypothetical protein
1392	 35.51	0	1473870..1476575	+	901	148267839	-	SaurJH9_1412	-	aconitate hydratase
1393	 32.48	0	1476755..1477222	+	155	148267840	-	SaurJH9_1413	-	hypothetical protein
1394	 33.67	0	1477429..1477725	-	98	148267841	-	SaurJH9_1414	-	hypothetical protein
1395	 33.83	0	1478101..1478709	-	202	148267842	-	SaurJH9_1415	-	hypothetical protein
1396	 35.04	0	1478909..1480906	+	665	148267843	-	SaurJH9_1416	-	DNA topoisomerase IV subunit B
1397	 32.25	0	1480906..1483308	+	800	148267844	-	SaurJH9_1417	-	DNA topoisomerase IV subunit A
1398	 35.52	0	1483558..1485018	+	486	148267845	-	SaurJH9_1418	-	amino acid carrier protein
1399	 27.70	-1	1485518..1486369	+	283	148267846	-	SaurJH9_1419	-	transcription antiterminator
1400	 30.69	0	1486504..1487712	+	402	148267847	-	SaurJH9_1420	-	hypothetical protein
1401	 31.35	0	1488193..1490715	+	840	148267848	-	SaurJH9_1421	-	hypothetical protein
1402	 33.92	0	1490918..1491427	-	169	148267849	-	SaurJH9_1422	-	methionine sulfoxide reductase A
1403	 33.33	0	1491564..1492547	+	327	148267850	-	SaurJH9_1423	-	cell envelope-related transcriptional attenuator
1404	 36.51	+1	1492635..1492823	-	62	148267851	-	SaurJH9_1424	-	4-oxalocrotonate tautomerase
1405	 33.57	0	1492968..1494230	+	420	148267852	-	SaurJH9_1425	-	DNA-directed DNA polymerase
1406	 32.88	0	1494367..1495458	-	363	148267853	-	SaurJH9_1426	-	prephenate dehydrogenase
1407	 33.43	0	1495623..1496654	+	343	148267854	-	SaurJH9_1427	-	peptidase M42 family protein
1408	 31.49	0	1497146..1498552	+	468	148267855	-	SaurJH9_1428	-	anthranilate synthase component I
1409	 35.45	0	1498549..1499115	+	188	148267856	-	SaurJH9_1429	-	anthranilate synthase component II
1410	 33.83	0	1499121..1500119	+	332	148267857	-	SaurJH9_1430	-	anthranilate phosphoribosyltransferase
1411	 32.18	0	1500121..1500903	+	260	148267858	-	SaurJH9_1431	-	indole-3-glycerol-phosphate synthase
1412	 31.76	0	1500900..1501535	+	211	148267859	-	SaurJH9_1432	-	phosphoribosylanthranilate isomerase
1413	 37.94	+1	1501528..1502742	+	404	148267860	-	SaurJH9_1433	-	tryptophan synthase subunit beta
1414	 34.16	0	1502735..1503463	+	242	148267861	trpA	SaurJH9_1434	-	tryptophan synthase subunit alpha
1415	 31.99	0	1503785..1505047	+	420	148267862	-	SaurJH9_1435	-	methicillin resistance protein
1416	 31.59	0	1505066..1506325	+	419	148267863	-	SaurJH9_1436	-	methicillin resistance protein
1417	 23.96	-2	1506614..1507360	+	248	148267864	-	SaurJH9_1437	-	hypothetical protein
1418	 31.51	0	1507590..1508357	+	255	148267865	-	SaurJH9_1438	-	Cof-like hydrolase
1419	 32.91	0	1508405..1508878	-	157	148267866	-	SaurJH9_1439	-	zinc finger SWIM domain-containing protein
1420	 32.48	0	1509002..1509703	-	233	148267867	-	SaurJH9_1440	-	ABC transporter related
1421	 31.14	0	1509696..1510469	-	257	148267868	-	SaurJH9_1441	-	ABC transporter related
1422	 32.25	0	1510456..1511286	-	276	148267869	-	SaurJH9_1442	-	binding-protein-dependent transport systems inner membrane component
1423	 31.31	0	1511279..1512265	-	328	148267870	-	SaurJH9_1443	-	binding-protein-dependent transport systems inner membrane component
1424	 27.25	-1	1512569..1512913	-	114	148267871	-	SaurJH9_1444	-	hypothetical protein
1425	 33.44	0	1513118..1514932	+	604	148267872	-	SaurJH9_1445	-	oligoendopeptidase F
1426	 31.93	0	1515072..1515713	-	213	148267873	-	SaurJH9_1446	-	phosphate uptake regulator, PhoU
1427	 32.28	0	1515720..1516571	-	283	148267874	-	SaurJH9_1447	-	phosphate ABC transporter, ATPase subunit
1428	 35.40	0	1516618..1517535	-	305	148267875	-	SaurJH9_1448	-	phosphate ABC transporter, inner membrane subunit PstA
1429	 35.71	0	1517537..1518463	-	308	148267876	-	SaurJH9_1449	-	phosphate ABC transporter, inner membrane subunit PstC
1430	 32.01	0	1518654..1519637	-	327	148267877	-	SaurJH9_1450	-	phosphate binding protein
1431	 28.96	-1	1520180..1520476	+	98	148267878	-	SaurJH9_1451	-	transposase
1432	 34.99	0	1520612..1521514	-	300	148267879	-	SaurJH9_1452	-	hypothetical protein
1433	 33.21	0	1521661..1523262	+	533	148267880	-	SaurJH9_1453	-	ABC transporter related
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.