IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1246	 35.33	0	1306616..1307716	+	366	148267693	-	SaurJH9_1261	-	carbamoyl phosphate synthase small subunit
1247	 35.66	0	1307709..1310882	+	1057	148267694	carB	SaurJH9_1262	-	carbamoyl phosphate synthase large subunit
1248	 33.91	0	1310989..1311684	+	231	148267695	-	SaurJH9_1263	-	orotidine 5'-phosphate decarboxylase
1249	 33.01	0	1311684..1312295	+	203	148267696	-	SaurJH9_1264	-	orotate phosphoribosyltransferase
1250	 25.82	-2	1312325..1312537	+	70	148267697	-	SaurJH9_1265	-	hypothetical protein
1251	 33.33	0	1312974..1313375	+	133	148267698	-	SaurJH9_1266	-	hypothetical protein
1252	 31.98	0	1313638..1315335	-	565	148267699	-	SaurJH9_1267	-	fibronectin-binding A domain-containing protein
1253	 33.17	0	1315610..1316233	+	207	148267700	-	SaurJH9_1268	-	guanylate kinase
1254	 32.42	0	1316233..1316451	+	72	148267701	-	SaurJH9_1269	-	DNA-directed RNA polymerase, omega subunit
1255	 34.92	0	1316667..1317866	+	399	148267702	-	SaurJH9_1270	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
1256	 34.70	0	1317866..1320274	+	802	148267703	-	SaurJH9_1271	-	primosomal protein N'
1257	 30.92	0	1320780..1321733	+	317	148267704	-	SaurJH9_1272	-	hypothetical protein
1258	 30.82	0	1321896..1322174	-	92	148267705	-	SaurJH9_1273	-	TM2 domain-containing protein
1259	 33.33	0	1322398..1322886	+	162	148267706	-	SaurJH9_1274	-	formylmethionine deformylase
1260	 34.94	0	1322879..1323814	+	311	148267707	-	SaurJH9_1275	-	methionyl-tRNA formyltransferase
1261	 33.10	0	1323811..1325118	+	435	148267708	-	SaurJH9_1276	-	sun protein
1262	 33.88	0	1325121..1326215	+	364	148267709	-	SaurJH9_1277	-	radical SAM protein
1263	 32.39	0	1326222..1326965	+	247	148267710	-	SaurJH9_1278	-	protein phosphatase 2C-like protein
1264	 33.68	0	1326962..1328956	+	664	148267711	-	SaurJH9_1279	-	protein kinase
1265	 31.51	0	1329184..1330059	+	291	148267712	-	SaurJH9_1280	-	hypothetical protein
1266	 32.87	0	1330060..1330704	+	214	148267713	-	SaurJH9_1281	-	ribulose-phosphate 3-epimerase
1267	 32.71	0	1330711..1331352	+	213	148267714	-	SaurJH9_1282	-	hypothetical protein
1268	 37.57	+1	1331733..1331921	-	62	148267715	rpmB	SaurJH9_1283	-	50S ribosomal protein L28
1269	 32.53	0	1332364..1332738	+	124	148267716	-	SaurJH9_1284	-	hypothetical protein
1270	 34.00	0	1332753..1334399	+	548	148267717	-	SaurJH9_1285	-	hypothetical protein
1271	 33.77	0	1334589..1336649	+	686	148267718	-	SaurJH9_1286	-	ATP-dependent DNA helicase RecG
1272	 32.29	0	1336852..1337424	+	190	148267719	-	SaurJH9_1287	-	fatty acid biosynthesis transcriptional regulator
1273	 34.85	0	1337429..1338415	+	328	148267720	-	SaurJH9_1288	-	putative glycerol-3-phosphate acyltransferase PlsX
1274	 33.66	0	1338408..1339334	+	308	148267721	-	SaurJH9_1289	-	malonyl CoA-acyl carrier protein transacylase
1275	 36.57	+1	1339321..1340061	+	246	148267722	-	SaurJH9_1290	-	3-oxoacyl-(acyl-carrier-protein) reductase
1276	 34.19	0	1340496..1340729	+	77	148267723	-	SaurJH9_1291	-	acyl carrier protein
1277	 34.02	0	1340845..1341576	+	243	148267724	-	SaurJH9_1292	-	ribonuclease III
1278	 32.30	0	1341723..1345289	+	1188	148267725	-	SaurJH9_1293	-	chromosome segregation protein SMC
1279	 34.77	0	1345289..1346539	+	416	148267726	-	SaurJH9_1294	-	signal recognition particle-docking protein FtsY
1280	 27.63	-1	1346526..1346858	+	110	148267727	-	SaurJH9_1295	-	hypothetical protein
1281	 34.65	0	1346884..1348251	+	455	148267728	-	SaurJH9_1296	-	signal recognition particle protein
1282	 36.23	0	1348686..1348961	+	91	148267729	rpsP	SaurJH9_1297	-	30S ribosomal protein S16
1283	 31.75	0	1349149..1349652	+	167	148267730	-	SaurJH9_1298	-	16S rRNA processing protein RimM
1284	 35.50	0	1349652..1350389	+	245	148267731	-	SaurJH9_1299	-	tRNA (guanine-N1)-methyltransferase
1285	 39.03	+1	1350492..1350842	+	116	148267732	rplS	SaurJH9_1300	-	50S ribosomal protein L19
1286	 29.80	0	1351086..1353692	-	868	148267733	-	SaurJH9_1301	-	membrane protein-like protein
1287	 33.11	0	1354093..1354977	+	294	148267734	rbgA	SaurJH9_1302	-	ribosomal biogenesis GTPase
1288	 35.03	0	1354961..1355728	+	255	148267735	-	SaurJH9_1303	-	ribonuclease H
1289	 35.39	0	1355837..1357003	+	388	148267736	sucC	SaurJH9_1304	-	succinyl-CoA synthetase subunit beta
1290	 38.17	+1	1357025..1357933	+	302	148267737	-	SaurJH9_1305	-	succinyl-CoA synthetase subunit alpha
1291	 29.13	-1	1358160..1359278	+	372	148267738	-	SaurJH9_1306	-	CHAP domain-containing protein
1292	 25.86	-2	1359306..1360550	+	414	148267739	-	SaurJH9_1307	-	methicillin resistance protein
1293	 35.12	0	1361771..1363846	+	691	148267740	-	SaurJH9_1310	-	DNA topoisomerase I
1294	 35.55	0	1364002..1365309	+	435	148267741	-	SaurJH9_1311	-	tRNA (uracil-5-)-methyltransferase Gid
1295	 32.11	0	1365727..1366623	+	298	148267742	-	SaurJH9_1312	-	tyrosine recombinase XerC
1296	 39.38	+1	1366620..1367165	+	181	148267743	-	SaurJH9_1313	-	ATP-dependent protease peptidase subunit
1297	 34.90	0	1367231..1368634	+	467	148267744	hslU	SaurJH9_1314	-	ATP-dependent protease ATP-binding subunit
1298	 31.91	0	1368659..1369432	+	257	148267745	-	SaurJH9_1315	-	transcriptional repressor CodY
1299	 35.16	0	1369779..1370546	+	255	148267746	rpsB	SaurJH9_1316	-	30S ribosomal protein S2
1300	 36.51	+1	1370728..1371609	+	293	148267747	tsf	SaurJH9_1317	-	elongation factor Ts
1301	 36.38	+1	1371746..1372468	+	240	148267748	-	SaurJH9_1318	-	uridylate kinase
1302	 34.95	0	1372487..1373041	+	184	148267749	-	SaurJH9_1319	-	ribosome recycling factor
1303	 29.96	0	1373414..1374184	+	256	148267750	-	SaurJH9_1320	-	undecaprenyl diphosphate synthase
1304	 32.44	0	1374191..1374973	+	260	148267751	-	SaurJH9_1321	-	phosphatidate cytidylyltransferase
1305	 33.26	0	1375185..1376471	+	428	148267752	-	SaurJH9_1322	-	putative membrane-associated zinc metalloprotease
1306	 34.98	0	1376491..1378194	+	567	148267753	-	SaurJH9_1323	-	prolyl-tRNA synthetase
1307	 34.89	0	1378452..1382768	+	1438	148267754	-	SaurJH9_1324	-	DNA polymerase III PolC
1308	 32.69	0	1383058..1383525	+	155	148267755	-	SaurJH9_1325	-	hypothetical protein
1309	 35.46	0	1383546..1384721	+	391	148267756	nusA	SaurJH9_1326	-	transcription elongation factor NusA
1310	 30.18	0	1384742..1385026	+	94	148267757	-	SaurJH9_1327	-	hypothetical protein
1311	 32.39	0	1385023..1385340	+	105	148267758	-	SaurJH9_1328	-	ribosomal protein L7Ae/L30e/S12e/Gadd45
1312	 34.14	0	1385345..1387462	+	705	148267759	infB	SaurJH9_1329	-	translation initiation factor IF-2
1313	 30.28	0	1387806..1388198	+	130	148267760	rbfA	SaurJH9_1330	-	ribosome-binding factor A
1314	 32.24	0	1388367..1389284	+	305	148267761	-	SaurJH9_1331	-	tRNA pseudouridine synthase B
1315	 32.92	0	1389299..1390270	+	323	148267762	-	SaurJH9_1332	-	riboflavin biosynthesis protein RibF
1316	 35.93	0	1390385..1390654	+	89	148267763	rpsO	SaurJH9_1333	-	30S ribosomal protein S15
1317	 37.29	+1	1391023..1393119	+	698	148267764	-	SaurJH9_1334	-	polynucleotide phosphorylase/polyadenylase
1318	 33.62	0	1393304..1395028	+	574	148267765	-	SaurJH9_1335	-	beta-lactamase domain-containing protein
1319	 33.59	0	1395285..1397651	+	788	148267766	-	SaurJH9_1336	-	cell divisionFtsK/SpoIIIE
1320	 31.37	0	1397656..1398369	+	237	148267767	-	SaurJH9_1337	-	GntR family transcriptional regulator
1321	 29.70	-1	1398400..1399665	+	421	148267768	-	SaurJH9_1338	-	peptidase M16 domain-containing protein
1322	 31.00	0	1399665..1400951	+	428	148267769	-	SaurJH9_1339	-	peptidase M16 domain-containing protein
1323	 34.04	0	1400951..1401655	+	234	148267770	-	SaurJH9_1340	-	short-chain dehydrogenase/reductase SDR
1324	 33.33	0	1401760..1402587	+	275	148267771	-	SaurJH9_1341	-	amino acid-binding ACT domain-containing protein
1325	 30.53	0	1402606..1402998	+	130	148267772	-	SaurJH9_1342	-	helix-turn-helix domain-containing protein
1326	 30.57	0	1403032..1403610	+	192	148267773	-	SaurJH9_1343	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
1327	 30.73	0	1403834..1404985	+	383	148267774	-	SaurJH9_1344	-	competence/damage-inducible protein CinA
1328	 36.97	+1	1405150..1406193	+	347	148267775	recA	SaurJH9_1345	-	recombinase A
1329	 35.83	0	1406547..1408106	+	519	148267776	-	SaurJH9_1346	-	phosphodiesterase
1330	 27.31	-1	1408403..1408618	-	71	148267777	-	SaurJH9_1347	-	hypothetical protein
1331	 34.59	0	1408792..1409589	+	265	148267778	-	SaurJH9_1348	-	hypothetical protein
1332	 35.21	0	1409729..1411489	+	586	148267779	-	SaurJH9_1349	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
1333	 34.03	0	1411490..1412356	+	288	148267780	-	SaurJH9_1350	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
1334	 30.61	0	1412450..1412743	+	97	148267781	-	SaurJH9_1351	-	hypothetical protein
1335	 32.82	0	1412877..1414421	+	514	148267782	-	SaurJH9_1352	-	tRNA-i(6)A37 thiotransferase enzyme MiaB
1336	 29.78	-1	1414422..1414787	+	121	148267783	-	SaurJH9_1353	-	hypothetical protein
1337	 34.15	0	1414814..1415305	+	163	148267784	-	SaurJH9_1354	-	hypothetical protein
1338	 32.19	0	1415608..1418226	+	872	148267785	-	SaurJH9_1355	-	DNA mismatch repair protein
1339	 29.10	-1	1420255..1420797	+	180	148267786	-	SaurJH9_1357	-	glycerol uptake operon antiterminator regulatory protein
1340	 37.73	+1	1421272..1422090	+	272	148267787	-	SaurJH9_1358	-	MIP family channel protein
1341	 36.34	0	1422219..1423715	+	498	148267788	glpK	SaurJH9_1359	-	glycerol kinase
1342	 34.26	0	1423825..1425546	+	573	148267789	-	SaurJH9_1360	-	aerobic glycerol-3-phosphate dehydrogenase
1343	 30.17	0	1425693..1426610	+	305	148267790	-	SaurJH9_1361	-	alpha/beta hydrolase fold
1344	 31.84	0	1426628..1427563	+	311	148267791	-	SaurJH9_1362	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1345	 34.19	0	1427578..1427811	+	77	148267792	-	SaurJH9_1363	-	RNA chaperone Hfq
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.