IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1187	 28.54	-1	1244358..1244879	+	173	148267634	-	SaurJH9_1201	-	hypothetical protein
1188	 32.46	0	1244952..1246664	+	570	148267635	-	SaurJH9_1202	-	hypothetical protein
1189	 32.87	0	1246674..1249022	+	782	148267636	-	SaurJH9_1203	-	recombination and DNA strand exchange inhibitor protein
1190	 33.97	0	1249195..1249509	+	104	148267637	-	SaurJH9_1204	-	thioredoxin
1191	 33.11	0	1249833..1251614	+	593	148267638	uvrC	SaurJH9_1205	-	excinuclease ABC subunit C
1192	 32.03	0	1251938..1252552	+	204	148267639	-	SaurJH9_1206	-	succinate dehydrogenase/fumarate reductase cytochrome b subunit
1193	 38.43	+1	1252604..1254370	+	588	148267640	sdhA	SaurJH9_1207	-	succinate dehydrogenase flavoprotein subunit
1194	 35.29	0	1254370..1255185	+	271	148267641	sdhB	SaurJH9_1208	-	succinate dehydrogenase iron-sulfur subunit
1195	 36.33	0	1255421..1256221	+	266	148267642	-	SaurJH9_1209	-	glutamate racemase
1196	 32.82	0	1256233..1256820	+	195	148267643	-	SaurJH9_1210	-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
1197	 31.35	0	1256813..1257316	+	167	148267644	-	SaurJH9_1211	-	phosphodiesterase
1198	 29.09	-1	1257805..1258134	+	109	148267645	-	SaurJH9_1212	-	hypothetical protein
1199	 31.09	0	1258503..1258904	-	133	148267646	-	SaurJH9_1213	-	formyl peptide receptor-like 1 inhibitory protein
1200	 26.63	-1	1259574..1260080	+	168	148267647	-	SaurJH9_1214	-	hypothetical protein
1201	 31.53	0	1260340..1260837	+	165	148267648	-	SaurJH9_1215	-	hypothetical protein
1202	 28.77	-1	1260987..1261337	+	116	148267649	-	SaurJH9_1216	-	hypothetical protein
1203	 48.56	+2	1261654..1261896	+	80	148267650	-	SaurJH9_1217	-	hypothetical protein
1204	 27.96	-1	1262103..1262288	-	61	148267651	-	SaurJH9_1218	-	hypothetical protein
1205	 25.57	-2	1262498..1262716	-	72	148267652	-	SaurJH9_1219	-	hypothetical protein
1206	 29.91	0	1262910..1263143	-	77	148267653	-	SaurJH9_1220	-	hypothetical protein
1207	 30.91	0	1263662..1264981	+	439	148267654	-	SaurJH9_1221	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
1208	 34.17	0	1265140..1266099	-	319	148267655	-	SaurJH9_1222	-	beta-channel forming cytolysin
1209	 27.78	-1	1266902..1267099	+	65	148267656	-	SaurJH9_1223	-	hypothetical protein
1210	 30.82	0	1267589..1268305	-	238	148267657	-	SaurJH9_1224	-	superantigen-like protein
1211	 29.06	-1	1268413..1269138	-	241	148267658	-	SaurJH9_1225	-	superantigen-like protein
1212	 30.72	0	1269233..1269958	-	241	148267659	-	SaurJH9_1226	-	superantigen-like protein
1213	 33.73	0	1270396..1271397	+	333	148267660	-	SaurJH9_1227	-	ornithine carbamoyltransferase
1214	 33.55	0	1271417..1272352	+	311	148267661	-	SaurJH9_1228	-	carbamate kinase
1215	 35.84	0	1272524..1274080	+	518	148267662	-	SaurJH9_1229	-	hypothetical protein
1216	 28.95	-1	1274387..1274614	+	75	148267663	-	SaurJH9_1230	-	hypothetical protein
1217	 31.65	0	1274920..1275867	-	315	148267664	-	SaurJH9_1231	-	C4-dicarboxylate transporter/malic acid transport protein
1218	 34.81	0	1277209..1277343	+	44	148267665	-	SaurJH9_1232	-	haemolytic family protein
1219	 40.00	+2	1277400..1277534	+	44	148267666	-	SaurJH9_1233	-	haemolytic family protein
1220	 30.17	0	1277658..1278353	+	231	148267667	-	SaurJH9_1234	-	HAD family hydrolase
1221	 32.43	0	1278462..1278902	-	146	148267668	-	SaurJH9_1235	-	hypothetical protein
1222	 32.28	0	1279097..1280710	+	537	148267669	-	SaurJH9_1236	-	hypothetical protein
1223	 33.80	0	1280854..1281285	+	143	148267670	-	SaurJH9_1237	-	cell division protein MraZ
1224	 36.00	0	1281301..1282236	+	311	148267671	-	SaurJH9_1238	-	S-adenosyl-methyltransferase MraW
1225	 32.09	0	1282250..1282651	+	133	148267672	-	SaurJH9_1239	-	cell division protein
1226	 34.54	0	1282632..1284866	+	744	148267673	-	SaurJH9_1240	-	penicillin-binding protein 1
1227	 32.30	0	1285158..1286123	+	321	148267674	-	SaurJH9_1241	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
1228	 32.59	0	1286125..1287474	+	449	148267675	murD	SaurJH9_1242	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1229	 31.06	0	1287490..1288809	+	439	148267676	-	SaurJH9_1243	-	cell division protein FtsQ
1230	 32.13	0	1288915..1290327	+	470	148267677	-	SaurJH9_1244	-	cell division protein FtsA
1231	 38.62	+1	1290360..1291532	+	390	148267678	-	SaurJH9_1245	-	cell division protein FtsZ
1232	 31.82	0	1291792..1292583	+	263	148267679	-	SaurJH9_1246	-	hypothetical protein
1233	 32.88	0	1292607..1293275	+	222	148267680	-	SaurJH9_1247	-	alanine racemase domain-containing protein
1234	 35.11	0	1293272..1293835	+	187	148267681	-	SaurJH9_1248	-	hypothetical protein
1235	 26.80	-1	1293847..1294137	+	96	148267682	-	SaurJH9_1249	-	hypothetical protein
1236	 30.73	0	1294220..1295026	+	268	148267683	-	SaurJH9_1250	-	RNA-binding S4 domain-containing protein
1237	 34.79	0	1295050..1295667	+	205	148267684	-	SaurJH9_1251	-	hypothetical protein
1238	 35.11	0	1295888..1298641	+	917	148267685	ileS	SaurJH9_1252	-	isoleucyl-tRNA synthetase
1239	 32.08	0	1298932..1299729	+	265	148267686	-	SaurJH9_1253	-	glyoxalase/bleomycin resistance protein/dioxygenase
1240	 26.63	-1	1300553..1301044	+	163	148267687	-	SaurJH9_1255	-	lipoprotein signal peptidase
1241	 33.77	0	1301044..1301961	+	305	148267688	-	SaurJH9_1256	-	RluA family pseudouridine synthase
1242	 34.09	0	1302361..1302888	+	175	148267689	-	SaurJH9_1257	-	pyrimidine regulatory protein PyrR
1243	 34.94	0	1303106..1304413	+	435	148267690	-	SaurJH9_1258	-	uracil permease
1244	 31.63	0	1304441..1305322	+	293	148267691	pyrB	SaurJH9_1259	-	aspartate carbamoyltransferase catalytic subunit
1245	 35.92	0	1305337..1306614	+	425	148267692	pyrC	SaurJH9_1260	-	dihydroorotase
1246	 35.33	0	1306616..1307716	+	366	148267693	-	SaurJH9_1261	-	carbamoyl phosphate synthase small subunit
1247	 35.66	0	1307709..1310882	+	1057	148267694	carB	SaurJH9_1262	-	carbamoyl phosphate synthase large subunit
1248	 33.91	0	1310989..1311684	+	231	148267695	-	SaurJH9_1263	-	orotidine 5'-phosphate decarboxylase
1249	 33.01	0	1311684..1312295	+	203	148267696	-	SaurJH9_1264	-	orotate phosphoribosyltransferase
1250	 25.82	-2	1312325..1312537	+	70	148267697	-	SaurJH9_1265	-	hypothetical protein
1251	 33.33	0	1312974..1313375	+	133	148267698	-	SaurJH9_1266	-	hypothetical protein
1252	 31.98	0	1313638..1315335	-	565	148267699	-	SaurJH9_1267	-	fibronectin-binding A domain-containing protein
1253	 33.17	0	1315610..1316233	+	207	148267700	-	SaurJH9_1268	-	guanylate kinase
1254	 32.42	0	1316233..1316451	+	72	148267701	-	SaurJH9_1269	-	DNA-directed RNA polymerase, omega subunit
1255	 34.92	0	1316667..1317866	+	399	148267702	-	SaurJH9_1270	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
1256	 34.70	0	1317866..1320274	+	802	148267703	-	SaurJH9_1271	-	primosomal protein N'
1257	 30.92	0	1320780..1321733	+	317	148267704	-	SaurJH9_1272	-	hypothetical protein
1258	 30.82	0	1321896..1322174	-	92	148267705	-	SaurJH9_1273	-	TM2 domain-containing protein
1259	 33.33	0	1322398..1322886	+	162	148267706	-	SaurJH9_1274	-	formylmethionine deformylase
1260	 34.94	0	1322879..1323814	+	311	148267707	-	SaurJH9_1275	-	methionyl-tRNA formyltransferase
1261	 33.10	0	1323811..1325118	+	435	148267708	-	SaurJH9_1276	-	sun protein
1262	 33.88	0	1325121..1326215	+	364	148267709	-	SaurJH9_1277	-	radical SAM protein
1263	 32.39	0	1326222..1326965	+	247	148267710	-	SaurJH9_1278	-	protein phosphatase 2C-like protein
1264	 33.68	0	1326962..1328956	+	664	148267711	-	SaurJH9_1279	-	protein kinase
1265	 31.51	0	1329184..1330059	+	291	148267712	-	SaurJH9_1280	-	hypothetical protein
1266	 32.87	0	1330060..1330704	+	214	148267713	-	SaurJH9_1281	-	ribulose-phosphate 3-epimerase
1267	 32.71	0	1330711..1331352	+	213	148267714	-	SaurJH9_1282	-	hypothetical protein
1268	 37.57	+1	1331733..1331921	-	62	148267715	rpmB	SaurJH9_1283	-	50S ribosomal protein L28
1269	 32.53	0	1332364..1332738	+	124	148267716	-	SaurJH9_1284	-	hypothetical protein
1270	 34.00	0	1332753..1334399	+	548	148267717	-	SaurJH9_1285	-	hypothetical protein
1271	 33.77	0	1334589..1336649	+	686	148267718	-	SaurJH9_1286	-	ATP-dependent DNA helicase RecG
1272	 32.29	0	1336852..1337424	+	190	148267719	-	SaurJH9_1287	-	fatty acid biosynthesis transcriptional regulator
1273	 34.85	0	1337429..1338415	+	328	148267720	-	SaurJH9_1288	-	putative glycerol-3-phosphate acyltransferase PlsX
1274	 33.66	0	1338408..1339334	+	308	148267721	-	SaurJH9_1289	-	malonyl CoA-acyl carrier protein transacylase
1275	 36.57	+1	1339321..1340061	+	246	148267722	-	SaurJH9_1290	-	3-oxoacyl-(acyl-carrier-protein) reductase
1276	 34.19	0	1340496..1340729	+	77	148267723	-	SaurJH9_1291	-	acyl carrier protein
1277	 34.02	0	1340845..1341576	+	243	148267724	-	SaurJH9_1292	-	ribonuclease III
1278	 32.30	0	1341723..1345289	+	1188	148267725	-	SaurJH9_1293	-	chromosome segregation protein SMC
1279	 34.77	0	1345289..1346539	+	416	148267726	-	SaurJH9_1294	-	signal recognition particle-docking protein FtsY
1280	 27.63	-1	1346526..1346858	+	110	148267727	-	SaurJH9_1295	-	hypothetical protein
1281	 34.65	0	1346884..1348251	+	455	148267728	-	SaurJH9_1296	-	signal recognition particle protein
1282	 36.23	0	1348686..1348961	+	91	148267729	rpsP	SaurJH9_1297	-	30S ribosomal protein S16
1283	 31.75	0	1349149..1349652	+	167	148267730	-	SaurJH9_1298	-	16S rRNA processing protein RimM
1284	 35.50	0	1349652..1350389	+	245	148267731	-	SaurJH9_1299	-	tRNA (guanine-N1)-methyltransferase
1285	 39.03	+1	1350492..1350842	+	116	148267732	rplS	SaurJH9_1300	-	50S ribosomal protein L19
1286	 29.80	0	1351086..1353692	-	868	148267733	-	SaurJH9_1301	-	membrane protein-like protein
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.