IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1157	 31.88	0	1212828..1213310	-	160	148267604	-	SaurJH9_1171	-	hypothetical protein
1158	 31.52	0	1213451..1213726	+	91	148267605	-	SaurJH9_1172	-	hypothetical protein
1159	 31.15	0	1214028..1215266	+	412	148267606	-	SaurJH9_1173	-	cell cycle protein
1160	 35.48	0	1215820..1219272	+	1150	148267607	-	SaurJH9_1174	-	pyruvate carboxylase
1161	 33.52	0	1219412..1220482	-	356	148267608	-	SaurJH9_1175	-	cytochrome oxidase assembly
1162	 32.02	0	1220763..1221674	+	303	148267609	-	SaurJH9_1176	-	protoheme IX farnesyltransferase
1163	 32.47	0	1221699..1222160	+	153	148267610	-	SaurJH9_1177	-	hypothetical protein
1164	 30.06	0	1222487..1223524	+	345	148267611	-	SaurJH9_1178	-	hypothetical protein
1165	 35.17	0	1223540..1223974	+	144	148267612	-	SaurJH9_1179	-	hypothetical protein
1166	 36.03	0	1224037..1224963	-	308	148267613	-	SaurJH9_1180	-	glycerophosphoryl diester phosphodiesterase
1167	 27.45	-1	1225202..1225456	+	84	148267614	-	SaurJH9_1181	-	hypothetical protein
1168	 29.74	-1	1225459..1225848	-	129	148267615	-	SaurJH9_1182	-	hypothetical protein
1169	 31.68	0	1225918..1226460	+	180	148267616	-	SaurJH9_1183	-	putative methyltransferase
1170	 30.85	0	1226462..1226944	+	160	148267617	-	SaurJH9_1184	-	pantetheine-phosphate adenylyltransferase
1171	 32.19	0	1227006..1228145	-	379	148267618	-	SaurJH9_1185	-	hypothetical protein
1172	 33.87	0	1228272..1228829	+	185	148267619	-	SaurJH9_1186	-	hypothetical protein
1173	 36.78	+1	1228909..1229082	+	57	148267620	rpmF	SaurJH9_1187	-	50S ribosomal protein L32
1174	 32.82	0	1229236..1231173	-	645	148267621	-	SaurJH9_1188	-	cell wall anchor domain-containing protein
1175	 33.52	0	1231376..1232428	-	350	148267622	-	SaurJH9_1189	-	cell wall anchor domain-containing protein
1176	 32.02	0	1232637..1233320	+	227	148267623	-	SaurJH9_1190	-	NEAr transporter
1177	 28.51	-1	1233320..1234396	+	358	148267624	-	SaurJH9_1191	-	hypothetical protein
1178	 30.83	0	1234393..1235271	+	292	148267625	-	SaurJH9_1192	-	periplasmic binding protein
1179	 32.71	0	1235281..1236249	+	322	148267626	-	SaurJH9_1193	-	transport system permease protein
1180	 26.94	-1	1236311..1237045	+	244	148267627	-	SaurJH9_1194	-	peptidase C60B, sortase B
1181	 31.17	0	1237064..1237387	+	107	148267628	-	SaurJH9_1195	-	heme-degrading monooxygenase IsdG
1182	 35.22	0	1237771..1238511	+	246	148267629	-	SaurJH9_1196	-	tRNA/rRNA methyltransferase (SpoU)
1183	 34.75	0	1238891..1239949	+	352	148267630	pheS	SaurJH9_1197	-	phenylalanyl-tRNA synthetase subunit alpha
1184	 34.91	0	1239949..1242351	+	800	148267631	-	SaurJH9_1198	-	phenylalanyl-tRNA synthetase, beta subunit
1185	 32.91	0	1242783..1243721	-	312	148267632	-	SaurJH9_1199	-	ribonuclease HIII
1186	 32.58	0	1244091..1244357	+	88	148267633	-	SaurJH9_1200	-	hypothetical protein
1187	 28.54	-1	1244358..1244879	+	173	148267634	-	SaurJH9_1201	-	hypothetical protein
1188	 32.46	0	1244952..1246664	+	570	148267635	-	SaurJH9_1202	-	hypothetical protein
1189	 32.87	0	1246674..1249022	+	782	148267636	-	SaurJH9_1203	-	recombination and DNA strand exchange inhibitor protein
1190	 33.97	0	1249195..1249509	+	104	148267637	-	SaurJH9_1204	-	thioredoxin
1191	 33.11	0	1249833..1251614	+	593	148267638	uvrC	SaurJH9_1205	-	excinuclease ABC subunit C
1192	 32.03	0	1251938..1252552	+	204	148267639	-	SaurJH9_1206	-	succinate dehydrogenase/fumarate reductase cytochrome b subunit
1193	 38.43	+1	1252604..1254370	+	588	148267640	sdhA	SaurJH9_1207	-	succinate dehydrogenase flavoprotein subunit
1194	 35.29	0	1254370..1255185	+	271	148267641	sdhB	SaurJH9_1208	-	succinate dehydrogenase iron-sulfur subunit
1195	 36.33	0	1255421..1256221	+	266	148267642	-	SaurJH9_1209	-	glutamate racemase
1196	 32.82	0	1256233..1256820	+	195	148267643	-	SaurJH9_1210	-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
1197	 31.35	0	1256813..1257316	+	167	148267644	-	SaurJH9_1211	-	phosphodiesterase
1198	 29.09	-1	1257805..1258134	+	109	148267645	-	SaurJH9_1212	-	hypothetical protein
1199	 31.09	0	1258503..1258904	-	133	148267646	-	SaurJH9_1213	-	formyl peptide receptor-like 1 inhibitory protein
1200	 26.63	-1	1259574..1260080	+	168	148267647	-	SaurJH9_1214	-	hypothetical protein
1201	 31.53	0	1260340..1260837	+	165	148267648	-	SaurJH9_1215	-	hypothetical protein
1202	 28.77	-1	1260987..1261337	+	116	148267649	-	SaurJH9_1216	-	hypothetical protein
1203	 48.56	+2	1261654..1261896	+	80	148267650	-	SaurJH9_1217	-	hypothetical protein
1204	 27.96	-1	1262103..1262288	-	61	148267651	-	SaurJH9_1218	-	hypothetical protein
1205	 25.57	-2	1262498..1262716	-	72	148267652	-	SaurJH9_1219	-	hypothetical protein
1206	 29.91	0	1262910..1263143	-	77	148267653	-	SaurJH9_1220	-	hypothetical protein
1207	 30.91	0	1263662..1264981	+	439	148267654	-	SaurJH9_1221	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
1208	 34.17	0	1265140..1266099	-	319	148267655	-	SaurJH9_1222	-	beta-channel forming cytolysin
1209	 27.78	-1	1266902..1267099	+	65	148267656	-	SaurJH9_1223	-	hypothetical protein
1210	 30.82	0	1267589..1268305	-	238	148267657	-	SaurJH9_1224	-	superantigen-like protein
1211	 29.06	-1	1268413..1269138	-	241	148267658	-	SaurJH9_1225	-	superantigen-like protein
1212	 30.72	0	1269233..1269958	-	241	148267659	-	SaurJH9_1226	-	superantigen-like protein
1213	 33.73	0	1270396..1271397	+	333	148267660	-	SaurJH9_1227	-	ornithine carbamoyltransferase
1214	 33.55	0	1271417..1272352	+	311	148267661	-	SaurJH9_1228	-	carbamate kinase
1215	 35.84	0	1272524..1274080	+	518	148267662	-	SaurJH9_1229	-	hypothetical protein
1216	 28.95	-1	1274387..1274614	+	75	148267663	-	SaurJH9_1230	-	hypothetical protein
1217	 31.65	0	1274920..1275867	-	315	148267664	-	SaurJH9_1231	-	C4-dicarboxylate transporter/malic acid transport protein
1218	 34.81	0	1277209..1277343	+	44	148267665	-	SaurJH9_1232	-	haemolytic family protein
1219	 40.00	+2	1277400..1277534	+	44	148267666	-	SaurJH9_1233	-	haemolytic family protein
1220	 30.17	0	1277658..1278353	+	231	148267667	-	SaurJH9_1234	-	HAD family hydrolase
1221	 32.43	0	1278462..1278902	-	146	148267668	-	SaurJH9_1235	-	hypothetical protein
1222	 32.28	0	1279097..1280710	+	537	148267669	-	SaurJH9_1236	-	hypothetical protein
1223	 33.80	0	1280854..1281285	+	143	148267670	-	SaurJH9_1237	-	cell division protein MraZ
1224	 36.00	0	1281301..1282236	+	311	148267671	-	SaurJH9_1238	-	S-adenosyl-methyltransferase MraW
1225	 32.09	0	1282250..1282651	+	133	148267672	-	SaurJH9_1239	-	cell division protein
1226	 34.54	0	1282632..1284866	+	744	148267673	-	SaurJH9_1240	-	penicillin-binding protein 1
1227	 32.30	0	1285158..1286123	+	321	148267674	-	SaurJH9_1241	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
1228	 32.59	0	1286125..1287474	+	449	148267675	murD	SaurJH9_1242	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1229	 31.06	0	1287490..1288809	+	439	148267676	-	SaurJH9_1243	-	cell division protein FtsQ
1230	 32.13	0	1288915..1290327	+	470	148267677	-	SaurJH9_1244	-	cell division protein FtsA
1231	 38.62	+1	1290360..1291532	+	390	148267678	-	SaurJH9_1245	-	cell division protein FtsZ
1232	 31.82	0	1291792..1292583	+	263	148267679	-	SaurJH9_1246	-	hypothetical protein
1233	 32.88	0	1292607..1293275	+	222	148267680	-	SaurJH9_1247	-	alanine racemase domain-containing protein
1234	 35.11	0	1293272..1293835	+	187	148267681	-	SaurJH9_1248	-	hypothetical protein
1235	 26.80	-1	1293847..1294137	+	96	148267682	-	SaurJH9_1249	-	hypothetical protein
1236	 30.73	0	1294220..1295026	+	268	148267683	-	SaurJH9_1250	-	RNA-binding S4 domain-containing protein
1237	 34.79	0	1295050..1295667	+	205	148267684	-	SaurJH9_1251	-	hypothetical protein
1238	 35.11	0	1295888..1298641	+	917	148267685	ileS	SaurJH9_1252	-	isoleucyl-tRNA synthetase
1239	 32.08	0	1298932..1299729	+	265	148267686	-	SaurJH9_1253	-	glyoxalase/bleomycin resistance protein/dioxygenase
1240	 26.63	-1	1300553..1301044	+	163	148267687	-	SaurJH9_1255	-	lipoprotein signal peptidase
1241	 33.77	0	1301044..1301961	+	305	148267688	-	SaurJH9_1256	-	RluA family pseudouridine synthase
1242	 34.09	0	1302361..1302888	+	175	148267689	-	SaurJH9_1257	-	pyrimidine regulatory protein PyrR
1243	 34.94	0	1303106..1304413	+	435	148267690	-	SaurJH9_1258	-	uracil permease
1244	 31.63	0	1304441..1305322	+	293	148267691	pyrB	SaurJH9_1259	-	aspartate carbamoyltransferase catalytic subunit
1245	 35.92	0	1305337..1306614	+	425	148267692	pyrC	SaurJH9_1260	-	dihydroorotase
1246	 35.33	0	1306616..1307716	+	366	148267693	-	SaurJH9_1261	-	carbamoyl phosphate synthase small subunit
1247	 35.66	0	1307709..1310882	+	1057	148267694	carB	SaurJH9_1262	-	carbamoyl phosphate synthase large subunit
1248	 33.91	0	1310989..1311684	+	231	148267695	-	SaurJH9_1263	-	orotidine 5'-phosphate decarboxylase
1249	 33.01	0	1311684..1312295	+	203	148267696	-	SaurJH9_1264	-	orotate phosphoribosyltransferase
1250	 25.82	-2	1312325..1312537	+	70	148267697	-	SaurJH9_1265	-	hypothetical protein
1251	 33.33	0	1312974..1313375	+	133	148267698	-	SaurJH9_1266	-	hypothetical protein
1252	 31.98	0	1313638..1315335	-	565	148267699	-	SaurJH9_1267	-	fibronectin-binding A domain-containing protein
1253	 33.17	0	1315610..1316233	+	207	148267700	-	SaurJH9_1268	-	guanylate kinase
1254	 32.42	0	1316233..1316451	+	72	148267701	-	SaurJH9_1269	-	DNA-directed RNA polymerase, omega subunit
1255	 34.92	0	1316667..1317866	+	399	148267702	-	SaurJH9_1270	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
1256	 34.70	0	1317866..1320274	+	802	148267703	-	SaurJH9_1271	-	primosomal protein N'
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.