IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1108	 32.39	0	1164004..1164321	-	105	148267555	-	SaurJH9_1122	-	hypothetical protein
1109	 34.26	0	1165185..1166045	-	286	148267556	-	SaurJH9_1123	-	methylenetetrahydrofolate dehydrogenase (NADP(+))
1110	 38.10	+1	1166246..1166728	+	160	148267557	-	SaurJH9_1124	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
1111	 32.98	0	1166715..1167839	+	374	148267558	-	SaurJH9_1125	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
1112	 28.94	-1	1167843..1168547	+	234	148267559	-	SaurJH9_1126	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1113	 32.58	0	1168547..1168810	+	87	148267560	-	SaurJH9_1127	-	phosphoribosylformylglycinamidine synthase, purS
1114	 34.82	0	1168812..1169483	+	223	148267561	-	SaurJH9_1128	-	phosphoribosylformylglycinamidine synthase I
1115	 34.93	0	1169476..1171665	+	729	148267562	-	SaurJH9_1129	-	phosphoribosylformylglycinamidine synthase II
1116	 35.82	0	1171644..1173128	+	494	148267563	-	SaurJH9_1130	-	amidophosphoribosyltransferase
1117	 35.67	0	1173121..1174149	+	342	148267564	-	SaurJH9_1131	-	phosphoribosylaminoimidazole synthetase
1118	 32.10	0	1174152..1174718	+	188	148267565	-	SaurJH9_1132	-	phosphoribosylglycinamide formyltransferase
1119	 34.69	0	1174733..1176211	+	492	148267566	-	SaurJH9_1133	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
1120	 35.50	0	1176233..1177480	+	415	148267567	-	SaurJH9_1134	-	phosphoribosylamine--glycine ligase
1121	 30.86	0	1177747..1178553	-	268	148267568	-	SaurJH9_1135	-	cobalt transport protein
1122	 33.26	0	1178546..1179946	-	466	148267569	-	SaurJH9_1136	-	ABC transporter related
1123	 37.15	+1	1179961..1180536	-	191	148267570	-	SaurJH9_1137	-	hypothetical protein
1124	 41.37	+2	1180917..1181252	-	111	148267571	-	SaurJH9_1138	-	hypothetical protein
1125	 22.22	-2	1181309..1181443	-	44	148267572	-	SaurJH9_1139	-	hypothetical protein
1126	 29.09	-1	1181595..1182890	+	431	148267573	-	SaurJH9_1140	-	hypothetical protein
1127	 31.37	0	1183315..1184487	+	390	148267574	-	SaurJH9_1141	-	hypothetical protein
1128	 30.76	0	1184541..1185083	+	180	148267575	-	SaurJH9_1142	-	hypothetical protein
1129	 34.83	0	1185237..1185503	+	88	148267576	-	SaurJH9_1143	-	phosphocarrier protein HPr
1130	 35.14	0	1185506..1187224	+	572	148267577	-	SaurJH9_1144	-	phosphoenolpyruvate-protein phosphotransferase
1131	 28.63	-1	1187461..1187694	-	77	148267578	-	SaurJH9_1145	-	glutaredoxin
1132	 33.92	0	1187892..1189253	+	453	148267579	-	SaurJH9_1146	-	cytochrome bd ubiquinol oxidase, subunit I
1133	 30.49	0	1189250..1190269	+	339	148267580	-	SaurJH9_1147	-	cytochrome bd-type quinol oxidase subunit 2-like protein
1134	 35.14	0	1190402..1191064	+	220	148267581	-	SaurJH9_1148	-	TrkA domain-containing protein
1135	 33.86	0	1191310..1193007	-	565	148267582	-	SaurJH9_1149	-	beta-lactamase domain-containing protein
1136	 31.51	0	1193007..1193225	-	72	148267583	-	SaurJH9_1150	-	hypothetical protein
1137	 34.96	0	1193707..1194258	-	183	148267584	def	SaurJH9_1151	-	peptide deformylase
1138	 29.19	-1	1194623..1195249	+	208	148267585	-	SaurJH9_1152	-	hypothetical protein
1139	 37.29	+1	1195420..1196532	+	370	148267586	-	SaurJH9_1153	-	pyruvate dehydrogenase (acetyl-transferring)
1140	 38.34	+1	1196536..1197513	+	325	148267587	-	SaurJH9_1154	-	transketolase domain-containing protein
1141	 38.05	+1	1197604..1198896	+	430	148267588	-	SaurJH9_1155	-	branched-chain alpha-keto acid dehydrogenase subunit E2
1142	 36.96	+1	1198900..1200306	+	468	148267589	-	SaurJH9_1156	-	dihydrolipoamide dehydrogenase
1143	 32.25	0	1200474..1200749	+	91	148267590	-	SaurJH9_1157	-	hypothetical protein
1144	 29.81	0	1200893..1201432	+	179	148267591	-	SaurJH9_1158	-	XRE family transcriptional regulator
1145	 30.96	0	1201445..1202539	+	364	148267592	-	SaurJH9_1159	-	ABC transporter related
1146	 27.32	-1	1202532..1203329	+	265	148267593	-	SaurJH9_1160	-	binding-protein-dependent transport systems inner membrane component
1147	 30.25	0	1203335..1204144	+	269	148267594	-	SaurJH9_1161	-	binding-protein-dependent transport systems inner membrane component
1148	 31.47	0	1204144..1205217	+	357	148267595	-	SaurJH9_1162	-	extracellular solute-binding protein
1149	 31.67	0	1205291..1206310	+	339	148267596	-	SaurJH9_1163	-	hypothetical protein
1150	 29.29	-1	1206593..1207012	+	139	148267597	-	SaurJH9_1164	-	hypothetical protein
1151	 32.22	0	1207091..1208443	-	450	148267598	-	SaurJH9_1165	-	Mn2+/Fe2+ transporter
1152	 32.85	0	1208627..1209241	-	204	148267599	-	SaurJH9_1166	-	hypothetical protein
1153	 34.63	0	1209380..1210225	+	281	148267600	-	SaurJH9_1167	-	inositol-phosphate phosphatase
1154	 26.56	-1	1210379..1210570	-	63	148267601	-	SaurJH9_1168	-	hypothetical protein
1155	 35.06	0	1210672..1212519	+	615	148267602	-	SaurJH9_1169	-	GTP-binding protein TypA
1156	 36.90	+1	1212659..1212826	-	55	148267603	-	SaurJH9_1170	-	hypothetical protein
1157	 31.88	0	1212828..1213310	-	160	148267604	-	SaurJH9_1171	-	hypothetical protein
1158	 31.52	0	1213451..1213726	+	91	148267605	-	SaurJH9_1172	-	hypothetical protein
1159	 31.15	0	1214028..1215266	+	412	148267606	-	SaurJH9_1173	-	cell cycle protein
1160	 35.48	0	1215820..1219272	+	1150	148267607	-	SaurJH9_1174	-	pyruvate carboxylase
1161	 33.52	0	1219412..1220482	-	356	148267608	-	SaurJH9_1175	-	cytochrome oxidase assembly
1162	 32.02	0	1220763..1221674	+	303	148267609	-	SaurJH9_1176	-	protoheme IX farnesyltransferase
1163	 32.47	0	1221699..1222160	+	153	148267610	-	SaurJH9_1177	-	hypothetical protein
1164	 30.06	0	1222487..1223524	+	345	148267611	-	SaurJH9_1178	-	hypothetical protein
1165	 35.17	0	1223540..1223974	+	144	148267612	-	SaurJH9_1179	-	hypothetical protein
1166	 36.03	0	1224037..1224963	-	308	148267613	-	SaurJH9_1180	-	glycerophosphoryl diester phosphodiesterase
1167	 27.45	-1	1225202..1225456	+	84	148267614	-	SaurJH9_1181	-	hypothetical protein
1168	 29.74	-1	1225459..1225848	-	129	148267615	-	SaurJH9_1182	-	hypothetical protein
1169	 31.68	0	1225918..1226460	+	180	148267616	-	SaurJH9_1183	-	putative methyltransferase
1170	 30.85	0	1226462..1226944	+	160	148267617	-	SaurJH9_1184	-	pantetheine-phosphate adenylyltransferase
1171	 32.19	0	1227006..1228145	-	379	148267618	-	SaurJH9_1185	-	hypothetical protein
1172	 33.87	0	1228272..1228829	+	185	148267619	-	SaurJH9_1186	-	hypothetical protein
1173	 36.78	+1	1228909..1229082	+	57	148267620	rpmF	SaurJH9_1187	-	50S ribosomal protein L32
1174	 32.82	0	1229236..1231173	-	645	148267621	-	SaurJH9_1188	-	cell wall anchor domain-containing protein
1175	 33.52	0	1231376..1232428	-	350	148267622	-	SaurJH9_1189	-	cell wall anchor domain-containing protein
1176	 32.02	0	1232637..1233320	+	227	148267623	-	SaurJH9_1190	-	NEAr transporter
1177	 28.51	-1	1233320..1234396	+	358	148267624	-	SaurJH9_1191	-	hypothetical protein
1178	 30.83	0	1234393..1235271	+	292	148267625	-	SaurJH9_1192	-	periplasmic binding protein
1179	 32.71	0	1235281..1236249	+	322	148267626	-	SaurJH9_1193	-	transport system permease protein
1180	 26.94	-1	1236311..1237045	+	244	148267627	-	SaurJH9_1194	-	peptidase C60B, sortase B
1181	 31.17	0	1237064..1237387	+	107	148267628	-	SaurJH9_1195	-	heme-degrading monooxygenase IsdG
1182	 35.22	0	1237771..1238511	+	246	148267629	-	SaurJH9_1196	-	tRNA/rRNA methyltransferase (SpoU)
1183	 34.75	0	1238891..1239949	+	352	148267630	pheS	SaurJH9_1197	-	phenylalanyl-tRNA synthetase subunit alpha
1184	 34.91	0	1239949..1242351	+	800	148267631	-	SaurJH9_1198	-	phenylalanyl-tRNA synthetase, beta subunit
1185	 32.91	0	1242783..1243721	-	312	148267632	-	SaurJH9_1199	-	ribonuclease HIII
1186	 32.58	0	1244091..1244357	+	88	148267633	-	SaurJH9_1200	-	hypothetical protein
1187	 28.54	-1	1244358..1244879	+	173	148267634	-	SaurJH9_1201	-	hypothetical protein
1188	 32.46	0	1244952..1246664	+	570	148267635	-	SaurJH9_1202	-	hypothetical protein
1189	 32.87	0	1246674..1249022	+	782	148267636	-	SaurJH9_1203	-	recombination and DNA strand exchange inhibitor protein
1190	 33.97	0	1249195..1249509	+	104	148267637	-	SaurJH9_1204	-	thioredoxin
1191	 33.11	0	1249833..1251614	+	593	148267638	uvrC	SaurJH9_1205	-	excinuclease ABC subunit C
1192	 32.03	0	1251938..1252552	+	204	148267639	-	SaurJH9_1206	-	succinate dehydrogenase/fumarate reductase cytochrome b subunit
1193	 38.43	+1	1252604..1254370	+	588	148267640	sdhA	SaurJH9_1207	-	succinate dehydrogenase flavoprotein subunit
1194	 35.29	0	1254370..1255185	+	271	148267641	sdhB	SaurJH9_1208	-	succinate dehydrogenase iron-sulfur subunit
1195	 36.33	0	1255421..1256221	+	266	148267642	-	SaurJH9_1209	-	glutamate racemase
1196	 32.82	0	1256233..1256820	+	195	148267643	-	SaurJH9_1210	-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
1197	 31.35	0	1256813..1257316	+	167	148267644	-	SaurJH9_1211	-	phosphodiesterase
1198	 29.09	-1	1257805..1258134	+	109	148267645	-	SaurJH9_1212	-	hypothetical protein
1199	 31.09	0	1258503..1258904	-	133	148267646	-	SaurJH9_1213	-	formyl peptide receptor-like 1 inhibitory protein
1200	 26.63	-1	1259574..1260080	+	168	148267647	-	SaurJH9_1214	-	hypothetical protein
1201	 31.53	0	1260340..1260837	+	165	148267648	-	SaurJH9_1215	-	hypothetical protein
1202	 28.77	-1	1260987..1261337	+	116	148267649	-	SaurJH9_1216	-	hypothetical protein
1203	 48.56	+2	1261654..1261896	+	80	148267650	-	SaurJH9_1217	-	hypothetical protein
1204	 27.96	-1	1262103..1262288	-	61	148267651	-	SaurJH9_1218	-	hypothetical protein
1205	 25.57	-2	1262498..1262716	-	72	148267652	-	SaurJH9_1219	-	hypothetical protein
1206	 29.91	0	1262910..1263143	-	77	148267653	-	SaurJH9_1220	-	hypothetical protein
1207	 30.91	0	1263662..1264981	+	439	148267654	-	SaurJH9_1221	-	transposase, IS204/IS1001/IS1096/IS1165 family protein
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.