IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1009	 33.33	0	1078253..1078399	-	48	148267456	-	SaurJH9_1022	-	hypothetical protein
1010	 34.19	0	1078629..1079213	-	194	148267457	-	SaurJH9_1023	-	hypothetical protein
1011	 34.20	0	1079231..1079692	-	153	148267458	-	SaurJH9_1024	-	hypothetical protein
1012	 33.65	0	1079705..1080019	-	104	148267459	-	SaurJH9_1025	-	XRE family transcriptional regulator
1013	 31.65	0	1080171..1080407	+	78	148267460	-	SaurJH9_1026	-	hypothetical protein
1014	 35.26	0	1080421..1081197	+	258	148267461	-	SaurJH9_1027	-	Rha family phage regulatory protein
1015	 29.17	-1	1081226..1081369	+	47	148267462	-	SaurJH9_1028	-	hypothetical protein
1016	 28.77	-1	1081359..1081577	-	72	148267463	-	SaurJH9_1029	-	hypothetical protein
1017	 35.66	0	1081612..1081869	+	85	148267464	-	SaurJH9_1030	-	hypothetical protein
1018	 28.96	-1	1081838..1082203	-	121	148267465	-	SaurJH9_1031	-	hypothetical protein
1019	 34.26	0	1082258..1082473	+	71	148267466	-	SaurJH9_1032	-	hypothetical protein
1020	 30.68	0	1082498..1082761	+	87	148267467	-	SaurJH9_1033	-	hypothetical protein
1021	 37.65	+1	1082774..1082935	+	53	148267468	-	SaurJH9_1034	-	hypothetical protein
1022	 32.41	0	1083014..1083337	+	107	148267469	-	SaurJH9_1035	-	hypothetical protein
1023	 29.48	-1	1083352..1083714	+	120	148267470	-	SaurJH9_1036	-	hypothetical protein
1024	 34.88	0	1083711..1084877	+	388	148267471	-	SaurJH9_1037	-	hypothetical protein
1025	 34.41	0	1084903..1085460	+	185	148267472	-	SaurJH9_1038	-	hypothetical protein
1026	 35.22	0	1085520..1087481	+	653	148267473	-	SaurJH9_1039	-	DNA-directed DNA polymerase
1027	 29.03	-1	1087494..1087679	+	61	148267474	-	SaurJH9_1040	-	hypothetical protein
1028	 33.58	0	1087679..1088080	+	133	148267475	-	SaurJH9_1041	-	PVL ORF-50 family protein
1029	 38.04	+1	1088080..1088334	+	84	148267476	-	SaurJH9_1042	-	hypothetical protein
1030	 36.63	+1	1088340..1088582	+	80	148267477	-	SaurJH9_1043	-	phage conserved Open Reading Frame 51
1031	 31.40	0	1088596..1088802	+	68	148267478	-	SaurJH9_1044	-	hypothetical protein
1032	 30.76	0	1088805..1089542	+	245	148267479	-	SaurJH9_1045	-	hypothetical protein
1033	 36.67	+1	1089539..1089928	+	129	148267480	-	SaurJH9_1046	-	hypothetical protein
1034	 38.15	+1	1089921..1090169	+	82	148267481	-	SaurJH9_1047	-	hypothetical protein
1035	 31.84	0	1090162..1090698	+	178	148267482	-	SaurJH9_1048	-	dUTPase
1036	 36.23	0	1090735..1090941	+	68	148267483	-	SaurJH9_1049	-	hypothetical protein
1037	 32.04	0	1090938..1091324	+	128	148267484	-	SaurJH9_1050	-	hypothetical protein
1038	 33.33	0	1091321..1091473	+	50	148267485	-	SaurJH9_1051	-	transcriptional activator RinB
1039	 29.06	-1	1091508..1091741	+	77	148267486	-	SaurJH9_1052	-	hypothetical protein
1040	 35.13	0	1092029..1094476	+	815	148267487	-	SaurJH9_1053	-	virulence-associated E family protein
1041	 30.58	0	1094817..1095107	+	96	148267488	-	SaurJH9_1054	-	VRR-NUC
1042	 32.74	0	1095097..1096455	+	452	148267489	-	SaurJH9_1055	-	SNF2-related protein
1043	 32.88	0	1096468..1096905	+	145	148267490	-	SaurJH9_1056	-	RinA family phage transcriptional regulator
1044	 27.94	-1	1097062..1097376	+	104	148267491	-	SaurJH9_1057	-	HNH endonuclease
1045	 28.43	-1	1097505..1097810	+	101	148267492	-	SaurJH9_1058	-	phage terminase, small subunit, putative, P27
1046	 33.75	0	1097800..1099491	+	563	148267493	-	SaurJH9_1059	-	phage terminase
1047	 32.69	0	1099496..1100734	+	412	148267494	-	SaurJH9_1060	-	HK97 family phage portal protein
1048	 31.01	0	1100718..1101491	+	257	148267495	-	SaurJH9_1061	-	peptidase S14, ClpP
1049	 32.82	0	1101503..1102666	+	387	148267496	-	SaurJH9_1062	-	phage major capsid protein, HK97
1050	 32.26	0	1102735..1103013	+	92	148267497	-	SaurJH9_1063	-	phage protein DNA packaging protein
1051	 27.63	-1	1103025..1103357	+	110	148267498	-	SaurJH9_1064	-	hypothetical protein
1052	 32.84	0	1103354..1103755	+	133	148267499	-	SaurJH9_1065	-	hypothetical protein
1053	 26.52	-2	1103756..1104151	+	131	148267500	-	SaurJH9_1066	-	hypothetical protein
1054	 36.45	+1	1104186..1104827	+	213	148267501	-	SaurJH9_1067	-	phi13 family phage major tail protein
1055	 36.62	+1	1104919..1105374	+	151	148267502	-	SaurJH9_1068	-	Ig domain-containing protein
1056	 31.05	0	1105432..1105782	+	116	148267503	-	SaurJH9_1069	-	hypothetical protein
1057	 36.25	0	1105996..1112196	+	2066	148267504	-	SaurJH9_1070	-	TP901 family phage tail tape measure protein
1058	 30.67	0	1112196..1113020	+	274	148267505	-	SaurJH9_1071	-	hypothetical protein
1059	 29.86	0	1113029..1114612	+	527	148267506	-	SaurJH9_1072	-	hypothetical protein
1060	 34.71	0	1114612..1114902	+	96	148267507	-	SaurJH9_1073	-	hypothetical protein
1061	 35.27	0	1114918..1116828	+	636	148267508	-	SaurJH9_1074	-	hypothetical protein
1062	 33.81	0	1116828..1118294	+	488	148267509	-	SaurJH9_1075	-	hypothetical protein
1063	 31.54	0	1118294..1118683	+	129	148267510	-	SaurJH9_1076	-	hypothetical protein
1064	 28.48	-1	1118676..1118840	+	54	148267511	-	SaurJH9_1077	-	hypothetical protein
1065	 31.00	0	1118886..1119185	+	99	148267512	-	SaurJH9_1078	-	hypothetical protein
1066	 38.58	+1	1119321..1119758	+	145	148267513	-	SaurJH9_1079	-	phage phi LC3 family holin
1067	 40.59	+2	1119739..1121184	+	481	148267514	-	SaurJH9_1080	-	N-acetylmuramoyl-L-alanine amidase
1068	 31.35	0	1121744..1124068	+	774	148267515	-	SaurJH9_1081	-	peptidase S1 and S6, chymotrypsin/Hap
1069	 31.94	0	1124085..1125443	+	452	148267516	-	SaurJH9_1082	-	H(+)-transporting two-sector ATPase
1070	 32.34	0	1125579..1127093	+	504	148267517	-	SaurJH9_1083	-	5'-nucleotidase domain-containing protein
1071	 30.18	0	1127580..1128149	-	189	148267518	-	SaurJH9_1084	-	ComK family protein
1072	 33.33	0	1128359..1128577	+	72	148267519	-	SaurJH9_1085	-	hypothetical protein
1073	 30.29	0	1128658..1129644	-	328	148267520	-	SaurJH9_1086	-	lipoyltransferase and lipoate-protein ligase
1074	 30.51	0	1129843..1130019	+	58	148267521	-	SaurJH9_1087	-	hypothetical protein
1075	 27.36	-1	1130034..1130636	+	200	148267522	-	SaurJH9_1088	-	abortive infection protein
1076	 25.93	-2	1130906..1131013	+	35	148267523	-	SaurJH9_1089	-	hypothetical protein
1077	 26.87	-1	1131979..1133943	+	654	148267524	-	SaurJH9_1091	-	bacteriocin-associated integral membrane protein
1078	 30.53	0	1133946..1134266	+	106	148267525	-	SaurJH9_1092	-	hypothetical protein
1079	 27.88	-1	1134263..1134904	+	213	148267526	-	SaurJH9_1093	-	ABC transporter related
1080	 26.46	-2	1134992..1135282	-	96	148267527	-	SaurJH9_1094	-	hypothetical protein
1081	 28.26	-1	1135423..1135560	+	45	148267528	-	SaurJH9_1095	-	hypothetical protein
1082	 31.65	0	1135649..1136005	-	118	148267529	-	SaurJH9_1096	-	DoxX family protein
1083	 33.85	0	1136493..1137452	+	319	148267530	-	SaurJH9_1097	-	periplasmic binding protein
1084	 26.85	-1	1137693..1137908	-	71	148267531	-	SaurJH9_1098	-	TM2 domain-containing protein
1085	 32.25	0	1138073..1138624	+	183	148267532	-	SaurJH9_1099	-	hypothetical protein
1086	 34.93	0	1138676..1139614	-	312	148267533	-	SaurJH9_1100	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
1087	 31.94	0	1139796..1141157	+	453	148267534	-	SaurJH9_1101	-	isochorismate synthase
1088	 33.69	0	1141144..1142817	+	557	148267535	-	SaurJH9_1102	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
1089	 32.84	0	1142804..1143607	+	267	148267536	-	SaurJH9_1103	-	alpha/beta hydrolase fold
1090	 38.56	+1	1143600..1144421	+	273	148267537	-	SaurJH9_1104	-	naphthoate synthase
1091	 31.52	0	1144659..1144988	-	109	148267538	-	SaurJH9_1105	-	hypothetical protein
1092	 30.37	0	1145026..1146207	-	393	148267539	-	SaurJH9_1106	-	hypothetical protein
1093	 37.12	+1	1146289..1147317	-	342	148267540	-	SaurJH9_1107	-	glutamyl endopeptidase
1094	 32.12	0	1147845..1148999	-	384	148267541	-	SaurJH9_1108	-	aminotransferase, class I and II
1095	 27.30	-1	1149195..1150205	-	336	148267542	-	SaurJH9_1109	-	acyltransferase 3
1096	 31.43	0	1150358..1150777	+	139	148267543	-	SaurJH9_1110	-	MarR family transcriptional regulator
1097	 32.43	0	1150804..1150914	+	36	148267544	-	SaurJH9_1111	-	hypothetical protein
1098	 34.93	0	1150984..1154730	-	1248	148267545	-	SaurJH9_1112	-	N-acetylmuramoyl-L-alanine amidase., mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
1099	 34.71	0	1154958..1155392	-	144	148267546	-	SaurJH9_1113	-	GCN5-related N-acetyltransferase
1100	 30.79	0	1155547..1156017	-	156	148267547	-	SaurJH9_1114	-	hypothetical protein
1101	 32.59	0	1156065..1157282	-	405	148267548	-	SaurJH9_1115	-	hypothetical protein
1102	 28.39	-1	1157733..1158926	+	397	148267549	-	SaurJH9_1116	-	beta-lactamase
1103	 35.40	0	1159463..1159753	-	96	148267550	-	SaurJH9_1117	-	cytochrome aa3 quinol oxidase, subunit IV
1104	 35.97	0	1159750..1160355	-	201	148267551	-	SaurJH9_1118	-	cytochrome aa3 quinol oxidase, subunit III
1105	 36.90	+1	1160345..1162333	-	662	148267552	-	SaurJH9_1119	-	cytochrome aa3 quinol oxidase, subunit I
1106	 34.42	0	1162333..1163433	-	366	148267553	-	SaurJH9_1120	-	quinol oxidase AA3, subunit II
1107	 25.64	-2	1163679..1163795	+	38	148267554	-	SaurJH9_1121	-	hypothetical protein
1108	 32.39	0	1164004..1164321	-	105	148267555	-	SaurJH9_1122	-	hypothetical protein
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.