IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.03 STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
910	 29.17	-1	1026020..1027315	+	431	82750689	-	SAB0945	-	hypothetical protein
911	 25.49	-2	1027336..1027539	-	67	82750690	-	SAB0946c	-	hypothetical protein
912	 31.46	0	1027740..1028912	+	390	82750691	-	SAB0947	-	hypothetical protein
913	 29.83	0	1028966..1029508	+	180	82750692	-	SAB0948	-	hypothetical protein
914	 34.83	0	1029662..1029928	+	88	82750693	ptsH	SAB0949	-	phosphocarrier protein HPr
915	 35.14	0	1029931..1031649	+	572	82750694	ptsI	SAB0950	-	phosphoenolpyruvate-protein phosphatase
916	 28.21	-1	1031884..1032117	-	77	82750695	-	SAB0951c	-	hypothetical protein
917	 34.07	0	1032314..1033675	+	453	82750696	-	SAB0952	-	cytochrome d ubiquinol oxidase subunit I
918	 30.29	0	1033672..1034691	+	339	82750697	-	SAB0953	-	cytochrome d ubiquinol oxidase subunit II
919	 34.99	0	1034824..1035486	+	220	82750698	-	SAB0954	-	potassium uptake protein
920	 34.04	0	1035600..1037297	-	565	82750699	-	SAB0955c	-	hypothetical protein
921	 31.05	0	1037297..1037515	-	72	82750700	-	SAB0956c	-	hypothetical protein
922	 35.87	0	1037997..1038548	-	183	82750701	def	SAB0957c	-	peptide deformylase
923	 27.75	-1	1038913..1039539	+	208	82750702	-	SAB0958	-	hypothetical protein
924	 37.20	+1	1039710..1040822	+	370	82750703	pdhA	SAB0959	-	pyruvate dehydrogenase E1 component alpha subunit
925	 38.34	+1	1040826..1041803	+	325	82750704	pdhB	SAB0960	-	pyruvate dehydrogenase E1 component beta subunit
926	 38.05	+1	1041894..1043186	+	430	82750705	pdhC	SAB0961	-	branched-chain alpha-keto acid dehydrogenase subunit E2
927	 37.03	+1	1043190..1044596	+	468	82750706	pdhD	SAB0962	-	dihydrolipoamide dehydrogenase
928	 31.16	0	1044764..1045039	+	91	82750707	-	SAB0963	-	hypothetical protein
929	 30.00	0	1045183..1045722	+	179	82750708	-	SAB0964	-	transcriptional regulator
930	 31.51	0	1045734..1046828	+	364	82750709	-	SAB0965	-	spermidine/putrescine ATP-binding ABC transporter protein
931	 30.25	0	1047625..1048434	+	269	82750710	-	SAB0967	-	spermidine/putrescine ABC transporter permease protein
932	 31.75	0	1048434..1049507	+	357	82750711	-	SAB0968	-	spermidine/putrescine-binding periplasmic protein precursor
933	 31.46	0	1049581..1050594	+	337	82750712	-	SAB0969	-	hypothetical protein
934	 29.05	-1	1050877..1051296	+	139	82750713	-	SAB0970	-	hypothetical protein
935	 32.59	0	1051378..1052730	-	450	82750714	-	SAB0971c	-	Mn2+/Fe2+ transporter
936	 32.68	0	1052914..1053528	-	204	82750715	-	SAB0972c	-	hypothetical protein
937	 34.42	0	1053685..1054512	+	275	82750716	-	SAB0973	-	inositol-1-monophosphatase
938	 35.28	0	1054959..1056806	+	615	82750717	-	SAB0974	-	GTP-binding elongation factor protein
939	 37.50	+1	1056946..1057113	-	55	82750718	-	SAB0975c	-	hypothetical protein
940	 32.09	0	1057115..1057597	-	160	82750719	-	SAB0976c	-	hypothetical protein
941	 31.52	0	1057738..1058013	+	91	82750720	-	SAB0977	-	hypothetical protein
942	 31.70	0	1058327..1059553	+	408	82750721	-	SAB0978	-	cell division protein
943	 35.42	0	1060107..1063559	+	1150	82750722	-	SAB0979	-	pyruvate carboxylase
944	 33.89	0	1063699..1064769	-	356	82750723	ctaA	SAB0980c	-	heme O-oxygenase
945	 32.24	0	1065050..1065961	+	303	82750724	ctaB	SAB0981	-	protoheme IX farnesyltransferase
946	 32.47	0	1065986..1066447	+	153	82750725	-	SAB0982	-	hypothetical protein
947	 29.58	-1	1066773..1067810	+	345	82750726	-	SAB0983	-	hypothetical protein
948	 35.17	0	1067826..1068260	+	144	82750727	-	SAB0984	-	hypothetical protein
949	 36.03	0	1068323..1069249	-	308	82750728	-	SAB0985c	-	hypothetical protein
950	 27.06	-1	1069489..1069743	+	84	82750729	-	SAB0986	-	hypothetical protein
951	 29.49	-1	1069746..1070135	-	129	82750730	-	SAB0987c	-	hypothetical protein
952	 31.68	0	1070205..1070747	+	180	82750731	-	SAB0988	-	methyltransferase
953	 30.85	0	1070749..1071231	+	160	82750732	coaD	SAB0989	-	phosphopantetheine adenylyltransferase
954	 32.63	0	1071293..1072432	-	379	82750733	-	SAB0990c	-	hypothetical protein
955	 34.05	0	1072559..1073116	+	185	82750734	-	SAB0991	-	hypothetical protein
956	 36.78	+1	1073196..1073369	+	57	82750735	rpmF	SAB0992	-	50S ribosomal protein L32
957	 32.75	0	1073523..1075412	-	629	82750736	isdA	SAB0993c	-	iron-regulated cell wall-anchored protein
958	 33.62	0	1075615..1076667	-	350	82750737	isdB	SAB0994c	-	cell surface transferrin-binding protein
959	 32.46	0	1076876..1077559	+	227	82750738	isdC	SAB0995	-	iron-regulated cell surface protein
960	 28.69	-1	1077559..1078635	+	358	82750739	isdD	SAB0996	-	hypothetical protein
961	 30.72	0	1078632..1079510	+	292	82750740	isdE	SAB0997	-	iron transport lipoprotein
962	 32.92	0	1079520..1080488	+	322	82750741	isdF	SAB0998	-	iron transport permease protein
963	 27.48	-1	1080550..1081284	+	244	82750742	srtB	SAB0999	-	NPQTN specific sortase B
964	 29.94	0	1081303..1081626	+	107	82750743	-	SAB1000	-	heme-degrading monooxygenase IsdG
965	 34.95	0	1082010..1082750	+	246	82750744	-	SAB1001	-	rRNA methyltransferase
966	 34.84	0	1083131..1084189	+	352	82750745	pheS	SAB1002	-	phenylalanyl-tRNA synthetase subunit alpha
967	 34.58	0	1084189..1086591	+	800	82750746	pheT	SAB1003	-	phenylalanyl-tRNA synthetase beta chain
968	 32.91	0	1086900..1087838	-	312	161777620	-	SAB1004c	-	ribonuclease HIII
969	 32.58	0	1088213..1088479	+	88	82750748	-	SAB1005	-	hypothetical protein
970	 28.16	-1	1088480..1089001	+	173	82750749	-	SAB1006	-	hypothetical protein
971	 32.11	0	1089074..1090786	+	570	82750750	-	SAB1007	-	hypothetical protein
972	 32.78	0	1090796..1093144	+	782	82750751	-	SAB1008	-	recombination and DNA strand exchange inhibitor protein
973	 33.97	0	1093317..1093631	+	104	82750752	trxA	SAB1009	-	thioredoxin
974	 33.16	0	1093955..1095736	+	593	82750753	uvrC	SAB1010	-	excinuclease ABC subunit C
975	 32.20	0	1096060..1096674	+	204	82750754	sdhC	SAB1011	-	succinate dehydrogenase cytochrome b-558
976	 38.43	+1	1096726..1098492	+	588	82750755	sdhA	SAB1012	-	succinate dehydrogenase flavoprotein subunit
977	 35.54	0	1098492..1099307	+	271	82750756	sdhB	SAB1013	-	succinate dehydrogenase iron-sulfur subunit
978	 36.45	+1	1099548..1100348	+	266	82750757	murI	SAB1014	-	glutamate racemase
979	 33.33	0	1100360..1100947	+	195	82750758	-	SAB1015	-	hypothetical protein
980	 31.35	0	1100940..1101443	+	167	82750759	-	SAB1016	-	hypothetical protein
981	 25.00	-2	1101572..1101739	+	55	82750760	-	SAB1017	-	hypothetical protein
982	 29.09	-1	1101933..1102262	+	109	82750761	-	SAB1018	-	hypothetical protein
983	 31.59	0	1102631..1103032	-	133	82750762	-	SAB1019c	-	formyl peptide receptor-like 1 inhibitory protein
984	 26.04	-2	1103705..1104211	+	168	82750763	-	SAB1020	-	hypothetical protein
985	 30.72	0	1104470..1104967	+	165	82750764	fib	SAB1021	-	fibrinogen-binding protein
986	 29.06	-1	1105122..1105472	+	116	82750765	-	SAB1022	-	fibrinogen-binding protein precursor
987	 40.51	+2	1105724..1105918	-	64	82750766	-	SAB1023c	-	hypothetical protein
988	 28.49	-1	1106075..1106260	-	61	82750767	-	SAB1024c	-	hypothetical protein
989	 25.70	-2	1106470..1106718	-	82	82750768	-	SAB1025c	-	hypothetical protein
990	 30.34	0	1106882..1107115	-	77	82750769	-	SAB1026c	-	hypothetical protein
991	 34.06	0	1107592..1108551	-	319	82750770	hla	SAB1027c	-	alpha-hemolysin precursor
992	 23.81	-2	1109224..1109370	+	48	82750771	-	SAB1028	-	hypothetical protein
993	 28.28	-1	1109354..1109551	+	65	82750772	-	SAB1029	-	hypothetical protein
994	 29.99	0	1109995..1110711	-	238	82750773	-	SAB1030c	-	superantigen-like protein
995	 29.61	-1	1110819..1111544	-	241	82750774	-	SAB1031c	-	superantigen-like protein
996	 30.30	0	1111640..1112365	-	241	82750775	-	SAB1032c	-	superantigen-like protein
997	 34.23	0	1112803..1113804	+	333	82750776	-	SAB1033	-	ornithine carbamoyltransferase
998	 33.44	0	1113827..1114759	+	310	82750777	-	SAB1034	-	carbamate kinase
999	 35.97	0	1114930..1116486	+	518	82750778	-	SAB1035	-	hypothetical protein
1000	 24.31	-2	1116638..1116925	-	95	82750779	-	SAB1036c	-	hypothetical protein
1001	 31.75	0	1117338..1118285	-	315	82750780	-	SAB1037c	-	exfoliative toxin
1002	 30.42	0	1120088..1120774	+	228	82750782	-	SAB1039	-	haloacid dehalgenase-like hydrolase
1003	 32.43	0	1120882..1121322	-	146	82750783	-	SAB1040c	-	hypothetical protein
1004	 32.28	0	1121517..1123130	+	537	82750784	-	SAB1041	-	hypothetical protein
1005	 33.80	0	1123275..1123706	+	143	82750785	-	SAB1042	-	cell division protein MraZ
1006	 35.90	0	1123722..1124657	+	311	82750786	-	SAB1043	-	S-adenosyl-methyltransferase
1007	 31.25	0	1124641..1125072	+	143	82750787	-	SAB1044	-	cell division protein
1008	 34.68	0	1125053..1127287	+	744	82750788	pbpA	SAB1045	-	penicillin-binding protein 1
1009	 32.61	0	1127579..1128544	+	321	82750789	mraY	SAB1046	-	phospho-N-acetylmuramoyl-pentapeptide- transferase
33.03	MEAN

3.30	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.