IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.03   STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
885	 35.17	0	999711..1000145	-	144	82750664	-	SAB0920c	-	acetyltransferase family protein
886	 31.00	0	1000300..1000770	-	156	82750665	-	SAB0921c	-	hypothetical protein
887	 32.44	0	1000818..1002044	-	408	82750666	-	SAB0922c	-	hypothetical protein
888	 27.89	-1	1002493..1003686	+	397	82750667	fmt	SAB0923	-	autolysis and methicillin resistant-related protein
889	 35.40	0	1004223..1004513	-	96	82750668	qoxD	SAB0924c	-	quinol oxidase polypeptide IV
890	 35.97	0	1004510..1005115	-	201	82750669	qoxC	SAB0925c	-	quinol oxidase polypeptide III
891	 36.80	+1	1005105..1007093	-	662	82750670	qoxB	SAB0926c	-	quinol oxidase polypeptide I
892	 34.15	0	1007093..1008193	-	366	82750671	qoxA	SAB0927c	-	quinol oxidase polypeptide II
893	 32.39	0	1008766..1009083	-	105	82750672	-	SAB0928c	-	hypothetical protein
894	 44.62	+2	1009372..1009557	-	61	82750673	-	SAB0929c	-	hypothetical protein
895	 34.49	0	1009864..1010724	-	286	82750674	folD	SAB0930c	-	bifunctional methylenetetrahydrofolate dehydrogenase and methenyltetrahydrofolate
896	 38.30	+1	1010925..1011407	+	160	82750675	purE	SAB0931	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
897	 32.98	0	1011394..1012518	+	374	82750676	purK	SAB0932	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
898	 29.08	-1	1012522..1013226	+	234	82750677	purC	SAB0933	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
899	 32.20	0	1013226..1013489	+	87	82750678	-	SAB0934	-	hypothetical protein
900	 34.38	0	1013491..1014162	+	223	82750679	purQ	SAB0935	-	phosphoribosylformylglycinamidine synthase I
901	 35.02	0	1014155..1016344	+	729	82750680	purL	SAB0936	-	phosphoribosylformylglycinamidine synthase II
902	 35.76	0	1016323..1017807	+	494	82750681	purF	SAB0937	-	amidophosphoribosyltransferase
903	 35.76	0	1017800..1018828	+	342	82750682	purM	SAB0938	-	phosphoribosylaminoimidazole synthetase
904	 31.92	0	1018831..1019397	+	188	82750683	purN	SAB0939	-	phosphoribosylformylglycinamidine formyltransferase
905	 34.69	0	1019412..1020890	+	492	82750684	purH	SAB0940	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
906	 35.82	0	1020912..1022159	+	415	82750685	purD	SAB0941	-	phosphoribosylamine--glycine ligase
907	 31.10	0	1022425..1023231	-	268	82750686	-	SAB0942c	-	membrane transporter
908	 33.12	0	1023224..1024624	-	466	82750687	-	SAB0943c	-	cation ATP-binding ABC transporter protein
909	 36.98	+1	1024639..1025214	-	191	82750688	-	SAB0944c	-	hypothetical protein
910	 29.17	-1	1026020..1027315	+	431	82750689	-	SAB0945	-	hypothetical protein
911	 25.49	-2	1027336..1027539	-	67	82750690	-	SAB0946c	-	hypothetical protein
912	 31.46	0	1027740..1028912	+	390	82750691	-	SAB0947	-	hypothetical protein
913	 29.83	0	1028966..1029508	+	180	82750692	-	SAB0948	-	hypothetical protein
914	 34.83	0	1029662..1029928	+	88	82750693	ptsH	SAB0949	-	phosphocarrier protein HPr
915	 35.14	0	1029931..1031649	+	572	82750694	ptsI	SAB0950	-	phosphoenolpyruvate-protein phosphatase
916	 28.21	-1	1031884..1032117	-	77	82750695	-	SAB0951c	-	hypothetical protein
917	 34.07	0	1032314..1033675	+	453	82750696	-	SAB0952	-	cytochrome d ubiquinol oxidase subunit I
918	 30.29	0	1033672..1034691	+	339	82750697	-	SAB0953	-	cytochrome d ubiquinol oxidase subunit II
919	 34.99	0	1034824..1035486	+	220	82750698	-	SAB0954	-	potassium uptake protein
920	 34.04	0	1035600..1037297	-	565	82750699	-	SAB0955c	-	hypothetical protein
921	 31.05	0	1037297..1037515	-	72	82750700	-	SAB0956c	-	hypothetical protein
922	 35.87	0	1037997..1038548	-	183	82750701	def	SAB0957c	-	peptide deformylase
923	 27.75	-1	1038913..1039539	+	208	82750702	-	SAB0958	-	hypothetical protein
924	 37.20	+1	1039710..1040822	+	370	82750703	pdhA	SAB0959	-	pyruvate dehydrogenase E1 component alpha subunit
925	 38.34	+1	1040826..1041803	+	325	82750704	pdhB	SAB0960	-	pyruvate dehydrogenase E1 component beta subunit
926	 38.05	+1	1041894..1043186	+	430	82750705	pdhC	SAB0961	-	branched-chain alpha-keto acid dehydrogenase subunit E2
927	 37.03	+1	1043190..1044596	+	468	82750706	pdhD	SAB0962	-	dihydrolipoamide dehydrogenase
928	 31.16	0	1044764..1045039	+	91	82750707	-	SAB0963	-	hypothetical protein
929	 30.00	0	1045183..1045722	+	179	82750708	-	SAB0964	-	transcriptional regulator
930	 31.51	0	1045734..1046828	+	364	82750709	-	SAB0965	-	spermidine/putrescine ATP-binding ABC transporter protein
931	 30.25	0	1047625..1048434	+	269	82750710	-	SAB0967	-	spermidine/putrescine ABC transporter permease protein
932	 31.75	0	1048434..1049507	+	357	82750711	-	SAB0968	-	spermidine/putrescine-binding periplasmic protein precursor
933	 31.46	0	1049581..1050594	+	337	82750712	-	SAB0969	-	hypothetical protein
934	 29.05	-1	1050877..1051296	+	139	82750713	-	SAB0970	-	hypothetical protein
935	 32.59	0	1051378..1052730	-	450	82750714	-	SAB0971c	-	Mn2+/Fe2+ transporter
936	 32.68	0	1052914..1053528	-	204	82750715	-	SAB0972c	-	hypothetical protein
937	 34.42	0	1053685..1054512	+	275	82750716	-	SAB0973	-	inositol-1-monophosphatase
938	 35.28	0	1054959..1056806	+	615	82750717	-	SAB0974	-	GTP-binding elongation factor protein
939	 37.50	+1	1056946..1057113	-	55	82750718	-	SAB0975c	-	hypothetical protein
940	 32.09	0	1057115..1057597	-	160	82750719	-	SAB0976c	-	hypothetical protein
941	 31.52	0	1057738..1058013	+	91	82750720	-	SAB0977	-	hypothetical protein
942	 31.70	0	1058327..1059553	+	408	82750721	-	SAB0978	-	cell division protein
943	 35.42	0	1060107..1063559	+	1150	82750722	-	SAB0979	-	pyruvate carboxylase
944	 33.89	0	1063699..1064769	-	356	82750723	ctaA	SAB0980c	-	heme O-oxygenase
945	 32.24	0	1065050..1065961	+	303	82750724	ctaB	SAB0981	-	protoheme IX farnesyltransferase
946	 32.47	0	1065986..1066447	+	153	82750725	-	SAB0982	-	hypothetical protein
947	 29.58	-1	1066773..1067810	+	345	82750726	-	SAB0983	-	hypothetical protein
948	 35.17	0	1067826..1068260	+	144	82750727	-	SAB0984	-	hypothetical protein
949	 36.03	0	1068323..1069249	-	308	82750728	-	SAB0985c	-	hypothetical protein
950	 27.06	-1	1069489..1069743	+	84	82750729	-	SAB0986	-	hypothetical protein
951	 29.49	-1	1069746..1070135	-	129	82750730	-	SAB0987c	-	hypothetical protein
952	 31.68	0	1070205..1070747	+	180	82750731	-	SAB0988	-	methyltransferase
953	 30.85	0	1070749..1071231	+	160	82750732	coaD	SAB0989	-	phosphopantetheine adenylyltransferase
954	 32.63	0	1071293..1072432	-	379	82750733	-	SAB0990c	-	hypothetical protein
955	 34.05	0	1072559..1073116	+	185	82750734	-	SAB0991	-	hypothetical protein
956	 36.78	+1	1073196..1073369	+	57	82750735	rpmF	SAB0992	-	50S ribosomal protein L32
957	 32.75	0	1073523..1075412	-	629	82750736	isdA	SAB0993c	-	iron-regulated cell wall-anchored protein
958	 33.62	0	1075615..1076667	-	350	82750737	isdB	SAB0994c	-	cell surface transferrin-binding protein
959	 32.46	0	1076876..1077559	+	227	82750738	isdC	SAB0995	-	iron-regulated cell surface protein
960	 28.69	-1	1077559..1078635	+	358	82750739	isdD	SAB0996	-	hypothetical protein
961	 30.72	0	1078632..1079510	+	292	82750740	isdE	SAB0997	-	iron transport lipoprotein
962	 32.92	0	1079520..1080488	+	322	82750741	isdF	SAB0998	-	iron transport permease protein
963	 27.48	-1	1080550..1081284	+	244	82750742	srtB	SAB0999	-	NPQTN specific sortase B
964	 29.94	0	1081303..1081626	+	107	82750743	-	SAB1000	-	heme-degrading monooxygenase IsdG
965	 34.95	0	1082010..1082750	+	246	82750744	-	SAB1001	-	rRNA methyltransferase
966	 34.84	0	1083131..1084189	+	352	82750745	pheS	SAB1002	-	phenylalanyl-tRNA synthetase subunit alpha
967	 34.58	0	1084189..1086591	+	800	82750746	pheT	SAB1003	-	phenylalanyl-tRNA synthetase beta chain
968	 32.91	0	1086900..1087838	-	312	161777620	-	SAB1004c	-	ribonuclease HIII
969	 32.58	0	1088213..1088479	+	88	82750748	-	SAB1005	-	hypothetical protein
970	 28.16	-1	1088480..1089001	+	173	82750749	-	SAB1006	-	hypothetical protein
971	 32.11	0	1089074..1090786	+	570	82750750	-	SAB1007	-	hypothetical protein
972	 32.78	0	1090796..1093144	+	782	82750751	-	SAB1008	-	recombination and DNA strand exchange inhibitor protein
973	 33.97	0	1093317..1093631	+	104	82750752	trxA	SAB1009	-	thioredoxin
974	 33.16	0	1093955..1095736	+	593	82750753	uvrC	SAB1010	-	excinuclease ABC subunit C
975	 32.20	0	1096060..1096674	+	204	82750754	sdhC	SAB1011	-	succinate dehydrogenase cytochrome b-558
976	 38.43	+1	1096726..1098492	+	588	82750755	sdhA	SAB1012	-	succinate dehydrogenase flavoprotein subunit
977	 35.54	0	1098492..1099307	+	271	82750756	sdhB	SAB1013	-	succinate dehydrogenase iron-sulfur subunit
978	 36.45	+1	1099548..1100348	+	266	82750757	murI	SAB1014	-	glutamate racemase
979	 33.33	0	1100360..1100947	+	195	82750758	-	SAB1015	-	hypothetical protein
980	 31.35	0	1100940..1101443	+	167	82750759	-	SAB1016	-	hypothetical protein
981	 25.00	-2	1101572..1101739	+	55	82750760	-	SAB1017	-	hypothetical protein
982	 29.09	-1	1101933..1102262	+	109	82750761	-	SAB1018	-	hypothetical protein
983	 31.59	0	1102631..1103032	-	133	82750762	-	SAB1019c	-	formyl peptide receptor-like 1 inhibitory protein
984	 26.04	-2	1103705..1104211	+	168	82750763	-	SAB1020	-	hypothetical protein
33.03	MEAN

3.30	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.