IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.03   STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
837	 29.63	-1	943833..944426	-	197	82750616	-	SAB0870c	-	hypothetical protein
838	 29.31	-1	944612..944959	+	115	82750617	-	SAB0871	-	hypothetical protein
839	 33.65	0	944976..945611	+	211	82750618	-	SAB0872	-	GTP pyrophosphokinase
840	 34.94	0	945628..946437	+	269	82750619	ppnK	SAB0873	-	inorganic polyphosphate/ATP-NAD kinase
841	 30.53	0	946434..947288	+	284	82750620	-	SAB0874	-	RNA pseudoridylate synthase
842	 33.91	0	947309..948694	+	461	82750621	-	SAB0875	-	magnesium transporter
843	 31.65	0	948704..950548	+	614	82750622	-	SAB0876	-	Na+/H+ antiporter protein
844	 35.28	0	950826..951596	+	256	82750623	fabI	SAB0877	-	enoyl-(acyl carrier protein) reductase
845	 30.85	0	951790..952875	-	361	82750624	-	SAB0878c	-	hypothetical protein
846	 35.95	0	953217..954785	+	522	82750625	-	SAB0879	-	sodium/alanine symporter family protein
847	 31.62	0	954928..955686	+	252	82750626	-	SAB0880	-	hypothetical protein
848	 34.31	0	955880..956389	+	169	82750627	-	SAB0881	-	hypothetical protein
849	 32.24	0	956502..957692	-	396	82750628	-	SAB0882c	-	hypothetical protein
850	 32.57	0	957670..958845	-	391	82750629	-	SAB0883c	-	diacylglycerol glucosyltransferase
851	 37.17	+1	959278..960762	+	494	82750630	murE	SAB0884	-	UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
852	 30.95	0	960752..961003	+	83	82750631	-	SAB0885	-	hypothetical protein
853	 34.29	0	961003..962565	+	520	82750632	prfC	SAB0886	-	peptide chain release factor 3
854	 36.82	+1	962867..963670	+	267	82750633	-	SAB0887	-	toxic anion resistance membrane protein
855	 31.17	0	963904..966213	+	769	82750634	-	SAB0888	-	serine proteinase
856	 32.01	0	966230..967588	+	452	82750635	-	SAB0889	-	Na+ transporting ATP synthase
857	 32.21	0	967724..969238	+	504	82750636	-	SAB0890	-	5' nucleotidase
858	 30.35	0	969737..970306	-	189	82750637	-	SAB0891c	-	transcription factor
859	 34.21	0	970507..970734	+	75	82750638	-	SAB0892	-	hypothetical protein
860	 30.50	0	970815..971801	-	328	82750639	-	SAB0893c	-	lipoate-protein ligase A
861	 27.53	-1	972191..972793	+	200	82750640	-	SAB0894	-	hypothetical protein
862	 26.77	-1	974136..976100	+	654	82750641	-	SAB0896	-	hypothetical protein
863	 29.94	0	976103..976426	+	107	82750642	-	SAB0897	-	hypothetical protein
864	 28.45	-1	976468..977061	+	197	82750643	-	SAB0898	-	ABC transporter ATP-binding protein
865	 26.46	-1	977149..977439	-	96	82750644	-	SAB0899c	-	hypothetical protein
866	 25.35	-2	977772..978059	+	95	82750645	-	SAB0900	-	hypothetical protein
867	 26.99	-1	978065..979546	+	493	82750646	-	SAB0901	-	glycosyl transferase
868	 33.93	0	979690..980364	-	224	82750647	-	SAB0902c	-	transposase
869	 32.50	0	980434..980793	-	119	82750648	-	SAB0903c	-	hypothetical protein
870	 33.02	0	981279..981593	+	104	82750649	-	SAB0904	-	iron transport protein
871	 33.18	0	981584..982234	+	216	82750650	-	SAB0905	-	iron transport protein
872	 26.80	-1	982475..982765	-	96	82750651	-	SAB0906c	-	hypothetical protein
873	 32.43	0	982855..983406	+	183	82750652	-	SAB0907	-	hypothetical protein
874	 34.82	0	983457..984395	-	312	82750653	-	SAB0908c	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
875	 31.57	0	984577..985938	+	453	82750654	-	SAB0909	-	menaquinone-specific isochorismate synthase
876	 33.93	0	985925..987598	+	557	82750655	-	SAB0910	-	2-oxoglutarate decarboxylase
877	 32.59	0	987585..988388	+	267	82750656	-	SAB0911	-	hydrolase
878	 38.32	+1	988381..989202	+	273	82750657	menB	SAB0912	-	naphthoate synthase
879	 30.00	0	989441..989770	-	109	82750658	sspC	SAB0913c	-	cysteine protease
880	 30.54	0	989808..990989	-	393	82750659	sspB	SAB0914c	-	cysteine protease precursor
881	 36.51	+1	991071..992045	-	324	82750660	sspA	SAB0915c	-	glutamyl endopeptidase serine protease
882	 24.85	-2	992243..992407	-	54	82750661	-	SAB0916c	-	hypothetical protein
883	 32.12	0	992573..993727	-	384	82750662	-	SAB0917c	-	aromatic amino acid transferase
884	 34.94	0	995714..999505	-	1263	82750663	atl	SAB0919c	-	autolysin
885	 35.17	0	999711..1000145	-	144	82750664	-	SAB0920c	-	acetyltransferase family protein
886	 31.00	0	1000300..1000770	-	156	82750665	-	SAB0921c	-	hypothetical protein
887	 32.44	0	1000818..1002044	-	408	82750666	-	SAB0922c	-	hypothetical protein
888	 27.89	-1	1002493..1003686	+	397	82750667	fmt	SAB0923	-	autolysis and methicillin resistant-related protein
889	 35.40	0	1004223..1004513	-	96	82750668	qoxD	SAB0924c	-	quinol oxidase polypeptide IV
890	 35.97	0	1004510..1005115	-	201	82750669	qoxC	SAB0925c	-	quinol oxidase polypeptide III
891	 36.80	+1	1005105..1007093	-	662	82750670	qoxB	SAB0926c	-	quinol oxidase polypeptide I
892	 34.15	0	1007093..1008193	-	366	82750671	qoxA	SAB0927c	-	quinol oxidase polypeptide II
893	 32.39	0	1008766..1009083	-	105	82750672	-	SAB0928c	-	hypothetical protein
894	 44.62	+2	1009372..1009557	-	61	82750673	-	SAB0929c	-	hypothetical protein
895	 34.49	0	1009864..1010724	-	286	82750674	folD	SAB0930c	-	bifunctional methylenetetrahydrofolate dehydrogenase and methenyltetrahydrofolate
896	 38.30	+1	1010925..1011407	+	160	82750675	purE	SAB0931	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
897	 32.98	0	1011394..1012518	+	374	82750676	purK	SAB0932	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
898	 29.08	-1	1012522..1013226	+	234	82750677	purC	SAB0933	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
899	 32.20	0	1013226..1013489	+	87	82750678	-	SAB0934	-	hypothetical protein
900	 34.38	0	1013491..1014162	+	223	82750679	purQ	SAB0935	-	phosphoribosylformylglycinamidine synthase I
901	 35.02	0	1014155..1016344	+	729	82750680	purL	SAB0936	-	phosphoribosylformylglycinamidine synthase II
902	 35.76	0	1016323..1017807	+	494	82750681	purF	SAB0937	-	amidophosphoribosyltransferase
903	 35.76	0	1017800..1018828	+	342	82750682	purM	SAB0938	-	phosphoribosylaminoimidazole synthetase
904	 31.92	0	1018831..1019397	+	188	82750683	purN	SAB0939	-	phosphoribosylformylglycinamidine formyltransferase
905	 34.69	0	1019412..1020890	+	492	82750684	purH	SAB0940	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
906	 35.82	0	1020912..1022159	+	415	82750685	purD	SAB0941	-	phosphoribosylamine--glycine ligase
907	 31.10	0	1022425..1023231	-	268	82750686	-	SAB0942c	-	membrane transporter
908	 33.12	0	1023224..1024624	-	466	82750687	-	SAB0943c	-	cation ATP-binding ABC transporter protein
909	 36.98	+1	1024639..1025214	-	191	82750688	-	SAB0944c	-	hypothetical protein
910	 29.17	-1	1026020..1027315	+	431	82750689	-	SAB0945	-	hypothetical protein
911	 25.49	-2	1027336..1027539	-	67	82750690	-	SAB0946c	-	hypothetical protein
912	 31.46	0	1027740..1028912	+	390	82750691	-	SAB0947	-	hypothetical protein
913	 29.83	0	1028966..1029508	+	180	82750692	-	SAB0948	-	hypothetical protein
914	 34.83	0	1029662..1029928	+	88	82750693	ptsH	SAB0949	-	phosphocarrier protein HPr
915	 35.14	0	1029931..1031649	+	572	82750694	ptsI	SAB0950	-	phosphoenolpyruvate-protein phosphatase
916	 28.21	-1	1031884..1032117	-	77	82750695	-	SAB0951c	-	hypothetical protein
917	 34.07	0	1032314..1033675	+	453	82750696	-	SAB0952	-	cytochrome d ubiquinol oxidase subunit I
918	 30.29	0	1033672..1034691	+	339	82750697	-	SAB0953	-	cytochrome d ubiquinol oxidase subunit II
919	 34.99	0	1034824..1035486	+	220	82750698	-	SAB0954	-	potassium uptake protein
920	 34.04	0	1035600..1037297	-	565	82750699	-	SAB0955c	-	hypothetical protein
921	 31.05	0	1037297..1037515	-	72	82750700	-	SAB0956c	-	hypothetical protein
922	 35.87	0	1037997..1038548	-	183	82750701	def	SAB0957c	-	peptide deformylase
923	 27.75	-1	1038913..1039539	+	208	82750702	-	SAB0958	-	hypothetical protein
924	 37.20	+1	1039710..1040822	+	370	82750703	pdhA	SAB0959	-	pyruvate dehydrogenase E1 component alpha subunit
925	 38.34	+1	1040826..1041803	+	325	82750704	pdhB	SAB0960	-	pyruvate dehydrogenase E1 component beta subunit
926	 38.05	+1	1041894..1043186	+	430	82750705	pdhC	SAB0961	-	branched-chain alpha-keto acid dehydrogenase subunit E2
927	 37.03	+1	1043190..1044596	+	468	82750706	pdhD	SAB0962	-	dihydrolipoamide dehydrogenase
928	 31.16	0	1044764..1045039	+	91	82750707	-	SAB0963	-	hypothetical protein
929	 30.00	0	1045183..1045722	+	179	82750708	-	SAB0964	-	transcriptional regulator
930	 31.51	0	1045734..1046828	+	364	82750709	-	SAB0965	-	spermidine/putrescine ATP-binding ABC transporter protein
931	 30.25	0	1047625..1048434	+	269	82750710	-	SAB0967	-	spermidine/putrescine ABC transporter permease protein
932	 31.75	0	1048434..1049507	+	357	82750711	-	SAB0968	-	spermidine/putrescine-binding periplasmic protein precursor
933	 31.46	0	1049581..1050594	+	337	82750712	-	SAB0969	-	hypothetical protein
934	 29.05	-1	1050877..1051296	+	139	82750713	-	SAB0970	-	hypothetical protein
935	 32.59	0	1051378..1052730	-	450	82750714	-	SAB0971c	-	Mn2+/Fe2+ transporter
936	 32.68	0	1052914..1053528	-	204	82750715	-	SAB0972c	-	hypothetical protein
33.03	MEAN

3.30	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.