IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.03 STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
783	 32.31	0	880133..880426	-	97	82750562	mnhF	SAB0814c	-	putative monovalent cation/H+ antiporter subunit F
784	 28.96	-1	880426..880905	-	159	82750563	mnhE	SAB0815c	-	putative monovalent cation/H+ antiporter subunit E
785	 33.60	0	880907..882403	-	498	82750564	mnhD	SAB0816c	-	putative monovalent cation/H+ antiporter subunit D
786	 34.21	0	882396..882737	-	113	82750565	mnhC	SAB0817c	-	putative monovalent cation/H+ antiporter subunit C
787	 33.33	0	882737..883165	-	142	82750566	mnhC	SAB0818c	-	putative monovalent cation/H+ antiporter subunit B
788	 33.50	0	883158..885563	-	801	82750567	mnhA	SAB0819c	-	monovalent cation/H+ antiporter subunit A
789	 33.07	0	885694..886077	-	127	82750568	-	SAB0820c	-	hypothetical protein
790	 35.35	0	886141..886734	+	197	82750569	-	SAB0821	-	peptidyl-prolyl cis-trans isomerase
791	 32.80	0	887150..887527	+	125	82750570	-	SAB0822	-	hypothetical protein
792	 36.88	+1	887888..889015	+	375	82750571	-	SAB0823	-	NADH-dependent flavin oxidoreductase
793	 35.68	0	889323..890513	+	396	82750572	rocD	SAB0824	-	ornithine--oxo-acid transaminase
794	 36.87	+1	890622..891866	+	414	82750573	-	SAB0825	-	NAD-specific glutamate dehydrogenase
795	 41.09	+2	891975..892103	-	42	82750574	-	SAB0826c	-	hypothetical protein
796	 33.01	0	892203..893132	-	309	82750575	glpQ	SAB0827c	-	glycerophosphoryl diester phosphodiesterase
797	 35.00	0	893374..894753	-	459	82750576	argH	SAB0828c	-	argininosuccinate lyase
798	 34.99	0	894743..895948	-	401	82750577	argG	SAB0829c	-	argininosuccinate synthase
799	 33.33	0	896299..897630	+	443	82750578	pgi	SAB0830	-	glucose-6-phosphate isomerase
800	 22.04	-2	898015..898200	+	61	82750579	-	SAB0831	-	hypothetical protein
801	 30.73	0	898503..899078	+	191	82750580	-	SAB0832	-	hypothetical protein
802	 31.62	0	899083..899607	+	174	82750581	spsA	SAB0833	-	type-I signal peptidase
803	 30.90	0	899623..900198	+	191	82750582	spsB	SAB0834	-	type-I signal peptidase
804	 32.44	0	900358..903834	+	1158	82750583	-	SAB0835	-	ATP-dependent nuclease subunit B
805	 33.25	0	903835..907488	+	1217	82750584	-	SAB0836	-	ATP-dependent nuclease subunit A
806	 33.11	0	907654..908556	+	300	82750585	-	SAB0837	-	fumarylacetoacetate hydrolase family protein
807	 32.05	0	908882..909271	+	129	82750586	-	SAB0838	-	hypothetical protein
808	 35.38	0	909442..910758	-	438	82750587	-	SAB0839c	-	coenzyme A disulfide reductase
809	 31.15	0	910810..911634	-	274	82750588	-	SAB0840c	-	hydrolase
810	 36.25	0	911748..912056	+	102	82750589	-	SAB0841	-	hypothetical protein
811	 33.79	0	914712..917321	+	869	82750590	clpB	SAB0843	-	putative ATP-dependent protease protein
812	 27.24	-1	917380..918249	-	289	82750591	-	SAB0844c	-	LysR family regulatory protein
813	 31.79	0	918442..918894	+	150	82750592	-	SAB0845	-	hypothetical protein
814	 32.41	0	919205..919639	+	144	82750593	-	SAB0846	-	hypothetical protein
815	 31.43	0	919819..920133	+	104	82750594	-	SAB0847	-	hypothetical protein
816	 35.67	0	920376..921317	+	313	82750595	fabH	SAB0848	-	3-oxoacyl-(acyl carrier protein) synthase III
817	 39.12	+1	921329..922573	+	414	82750596	fabF	SAB0849	-	3-oxoacyl-ACP synthase II
818	 30.83	0	922627..923943	-	438	82750597	-	SAB0850c	-	transposase
819	 26.88	-1	924142..924513	-	123	82750598	-	SAB0851c	-	hypothetical protein
820	 32.79	0	924756..925682	+	308	82750599	oppB	SAB0852	-	oligopeptide transport system permease protein
821	 34.17	0	925682..926752	+	356	82750600	oppC	SAB0853	-	oligopeptide transport system permease protein
822	 35.64	0	926768..927850	+	360	82750601	oppD	SAB0854	-	oligopeptide transport system ATP-binding protein
823	 32.80	0	927840..928781	+	313	82750602	oppF	SAB0855	-	oligopeptide transport system ATP-binding protein
824	 33.21	0	928800..930455	+	551	82750603	-	SAB0856	-	oligopeptide binding protein
825	 31.20	0	930624..931559	+	311	82750604	-	SAB0857	-	oligopeptide transport system permease protein
826	 30.29	0	931549..932568	+	339	82750605	-	SAB0858	-	oligopeptide transport system permease protein
827	 33.73	0	932654..933664	+	336	82750606	-	SAB0859	-	oligopeptide transport system ATP-binding protein
828	 30.18	0	933654..934574	+	306	82750607	appD	SAB0860	-	oligopeptide transport system ATP-binding protein
829	 28.65	-1	934603..935457	+	284	82750608	-	SAB0861	-	oligopeptide ATP-binding protein
830	 35.15	0	936344..937333	-	329	82750609	trpS	SAB0863c	-	tryptophanyl-tRNA synthetase
831	 32.58	0	937628..938023	+	131	161777621	spxA	SAB0864	-	transcriptional regulator Spx
832	 32.08	0	938394..939113	+	239	82750611	-	SAB0865	-	adaptor protein
833	 29.08	-1	939233..940219	+	328	82750612	-	SAB0866	-	competence-related protein
834	 31.90	0	940267..942075	+	602	82750613	pepB	SAB0867	-	thimet oligopeptidase
835	 30.15	0	942535..943320	-	261	82750614	-	SAB0868c	-	hypothetical protein
836	 36.07	0	943364..943729	-	121	82750615	-	SAB0869c	-	hypothetical protein
837	 29.63	-1	943833..944426	-	197	82750616	-	SAB0870c	-	hypothetical protein
838	 29.31	-1	944612..944959	+	115	82750617	-	SAB0871	-	hypothetical protein
839	 33.65	0	944976..945611	+	211	82750618	-	SAB0872	-	GTP pyrophosphokinase
840	 34.94	0	945628..946437	+	269	82750619	ppnK	SAB0873	-	inorganic polyphosphate/ATP-NAD kinase
841	 30.53	0	946434..947288	+	284	82750620	-	SAB0874	-	RNA pseudoridylate synthase
842	 33.91	0	947309..948694	+	461	82750621	-	SAB0875	-	magnesium transporter
843	 31.65	0	948704..950548	+	614	82750622	-	SAB0876	-	Na+/H+ antiporter protein
844	 35.28	0	950826..951596	+	256	82750623	fabI	SAB0877	-	enoyl-(acyl carrier protein) reductase
845	 30.85	0	951790..952875	-	361	82750624	-	SAB0878c	-	hypothetical protein
846	 35.95	0	953217..954785	+	522	82750625	-	SAB0879	-	sodium/alanine symporter family protein
847	 31.62	0	954928..955686	+	252	82750626	-	SAB0880	-	hypothetical protein
848	 34.31	0	955880..956389	+	169	82750627	-	SAB0881	-	hypothetical protein
849	 32.24	0	956502..957692	-	396	82750628	-	SAB0882c	-	hypothetical protein
850	 32.57	0	957670..958845	-	391	82750629	-	SAB0883c	-	diacylglycerol glucosyltransferase
851	 37.17	+1	959278..960762	+	494	82750630	murE	SAB0884	-	UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
852	 30.95	0	960752..961003	+	83	82750631	-	SAB0885	-	hypothetical protein
853	 34.29	0	961003..962565	+	520	82750632	prfC	SAB0886	-	peptide chain release factor 3
854	 36.82	+1	962867..963670	+	267	82750633	-	SAB0887	-	toxic anion resistance membrane protein
855	 31.17	0	963904..966213	+	769	82750634	-	SAB0888	-	serine proteinase
856	 32.01	0	966230..967588	+	452	82750635	-	SAB0889	-	Na+ transporting ATP synthase
857	 32.21	0	967724..969238	+	504	82750636	-	SAB0890	-	5' nucleotidase
858	 30.35	0	969737..970306	-	189	82750637	-	SAB0891c	-	transcription factor
859	 34.21	0	970507..970734	+	75	82750638	-	SAB0892	-	hypothetical protein
860	 30.50	0	970815..971801	-	328	82750639	-	SAB0893c	-	lipoate-protein ligase A
861	 27.53	-1	972191..972793	+	200	82750640	-	SAB0894	-	hypothetical protein
862	 26.77	-1	974136..976100	+	654	82750641	-	SAB0896	-	hypothetical protein
863	 29.94	0	976103..976426	+	107	82750642	-	SAB0897	-	hypothetical protein
864	 28.45	-1	976468..977061	+	197	82750643	-	SAB0898	-	ABC transporter ATP-binding protein
865	 26.46	-1	977149..977439	-	96	82750644	-	SAB0899c	-	hypothetical protein
866	 25.35	-2	977772..978059	+	95	82750645	-	SAB0900	-	hypothetical protein
867	 26.99	-1	978065..979546	+	493	82750646	-	SAB0901	-	glycosyl transferase
868	 33.93	0	979690..980364	-	224	82750647	-	SAB0902c	-	transposase
869	 32.50	0	980434..980793	-	119	82750648	-	SAB0903c	-	hypothetical protein
870	 33.02	0	981279..981593	+	104	82750649	-	SAB0904	-	iron transport protein
871	 33.18	0	981584..982234	+	216	82750650	-	SAB0905	-	iron transport protein
872	 26.80	-1	982475..982765	-	96	82750651	-	SAB0906c	-	hypothetical protein
873	 32.43	0	982855..983406	+	183	82750652	-	SAB0907	-	hypothetical protein
874	 34.82	0	983457..984395	-	312	82750653	-	SAB0908c	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
875	 31.57	0	984577..985938	+	453	82750654	-	SAB0909	-	menaquinone-specific isochorismate synthase
876	 33.93	0	985925..987598	+	557	82750655	-	SAB0910	-	2-oxoglutarate decarboxylase
877	 32.59	0	987585..988388	+	267	82750656	-	SAB0911	-	hydrolase
878	 38.32	+1	988381..989202	+	273	82750657	menB	SAB0912	-	naphthoate synthase
879	 30.00	0	989441..989770	-	109	82750658	sspC	SAB0913c	-	cysteine protease
880	 30.54	0	989808..990989	-	393	82750659	sspB	SAB0914c	-	cysteine protease precursor
881	 36.51	+1	991071..992045	-	324	82750660	sspA	SAB0915c	-	glutamyl endopeptidase serine protease
882	 24.85	-2	992243..992407	-	54	82750661	-	SAB0916c	-	hypothetical protein
33.03	MEAN

3.30	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.