IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.03   STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
724	 27.37	-1	826924..827208	-	94	82750503	-	SAB0751c	-	hypothetical protein
725	 30.88	0	827296..827865	-	189	82750504	-	SAB0752c	-	hypothetical protein
726	 29.10	-1	828053..828241	-	62	82750505	-	SAB0753c	-	hypothetical protein
727	 25.56	-2	828270..828539	-	89	82750506	-	SAB0754c	-	hypothetical protein
728	 26.75	-1	829071..829313	-	80	82750507	-	SAB0755c	-	hypothetical protein
729	 34.88	0	829532..830113	+	193	82750508	-	SAB0756	-	phosphoglycerate mutase
730	 30.42	0	830186..830803	-	205	82750509	-	SAB0757c	-	lysE type translocator protein
731	 29.70	-1	830959..831453	-	164	82750510	-	SAB0758c	-	hypothetical protein
732	 36.17	0	831851..832273	-	140	82750511	-	SAB0759c	-	hypothetical protein
733	 32.22	0	832421..833137	+	238	82750512	-	SAB0760	-	3-dehydroquinate dehydratase
734	 32.78	0	833220..833759	+	179	82750513	-	SAB0761	-	hypothetical protein
735	 34.27	0	833908..834228	-	106	82750514	-	SAB0762c	-	thioredoxin
736	 29.41	-1	834372..834728	+	118	82750515	-	SAB0763	-	hypothetical protein
737	 33.60	0	834886..835266	+	126	82750516	gcvH	SAB0764	-	glycine cleavage system protein H
738	 27.27	-1	837187..837483	+	98	82750517	-	SAB0767	-	hypothetical protein
739	 34.80	0	837733..838758	+	341	82750518	-	SAB0768	-	ATP-binding ABC transporter protein
740	 35.92	0	838751..839446	+	231	82750519	-	SAB0769	-	ABC transporter permease
741	 30.29	0	839464..840285	+	273	82750520	-	SAB0770	-	substrate-binding ABC transporter protein
742	 40.60	+2	840567..840800	+	77	82750521	-	SAB0771	-	hypothetical protein
743	 29.23	-1	840934..841128	+	64	82750522	-	SAB0772	-	hypothetical protein
744	 33.10	0	841362..842213	-	283	82750523	-	SAB0773c	-	hypothetical protein
745	 33.99	0	842541..843302	+	253	82750524	-	SAB0774	-	ATP-binding ABC transporter protein
746	 34.10	0	843400..844707	+	435	82750525	-	SAB0775	-	hypothetical protein
747	 37.12	+1	844822..846063	+	413	82750526	csdB	SAB0776	-	cysteine desulfurase
748	 36.13	0	846053..846517	+	154	82750527	-	SAB0777	-	nitrogen fixation protein
749	 34.62	0	846668..848065	+	465	82750528	-	SAB0778	-	hypothetical protein
750	 32.98	0	848133..848693	-	186	82750529	-	SAB0779c	-	phage-related integrase
751	 32.91	0	849355..849588	+	77	82750530	-	SAB0780	-	phage-associated holin
752	 35.05	0	849600..850355	+	251	82750531	-	SAB0781	-	lytic enzyme
753	 33.33	0	850702..851628	+	308	82750532	-	SAB0782	-	leukocidin chain lukM precursor
754	 32.40	0	851630..852598	+	322	82750533	-	SAB0783	-	Panton-Valentine leukocidin LukF-PV chain precursor
755	 29.47	-1	853306..853512	-	68	82750534	-	SAB0784c	-	hypothetical protein
756	 26.67	-1	853611..853925	-	104	82750535	-	SAB0785c	-	hypothetical protein
757	 32.18	0	854290..855330	+	346	82750536	-	SAB0786	-	hypothetical protein
758	 33.10	0	856582..857430	+	282	82750537	-	SAB0788	-	hypothetical protein
759	 31.88	0	857443..858270	+	275	82750538	-	SAB0789	-	hypothetical protein
760	 33.64	0	858297..859613	+	438	82750539	-	SAB0790	-	hypothetical protein
761	 36.06	0	859697..860614	+	305	82750540	-	SAB0791	-	lipoyl synthase
762	 28.24	-1	860735..861127	+	130	82750541	-	SAB0792	-	hypothetical protein
763	 31.46	0	861206..861472	-	88	82750542	-	SAB0793c	-	hypothetical protein
764	 29.66	-1	861570..862004	+	144	82750543	-	SAB0794	-	hypothetical protein
765	 35.13	0	862004..862783	+	259	82750544	-	SAB0795	-	4-nitrophenylphosphatase
766	 34.27	0	862816..863775	+	319	82750545	-	SAB0796	-	glycerate dehydrogenase
767	 26.14	-2	864187..864339	+	50	82750546	-	SAB0797	-	hypothetical protein
768	 34.29	0	864355..865812	+	485	82750547	dltA	SAB0798	-	D-alanine--D-alanyl carrier protein ligase
769	 29.88	0	865809..867023	+	404	82750548	dltB	SAB0799	-	D-alanine lipoteichoic acid and wall teichoic acid esterification protein
770	 29.11	-1	867041..867277	+	78	82750549	dltC	SAB0800	-	D-alanine--poly(phosphoribitol) ligase subunit 2
771	 32.40	0	867274..868449	+	391	82750550	dltD	SAB0801	-	D-alanine lipoteichoic acid and wall teichoic acid esterification secreted protein
772	 39.92	+2	868712..868954	-	80	82750551	-	SAB0802c	-	hypothetical protein
773	 31.48	0	869055..869378	+	107	82750552	-	SAB0803	-	hypothetical protein
774	 36.53	+1	869438..870502	-	354	82750553	-	SAB0804c	-	NADH dehydrogenase
775	 35.02	0	870819..871055	+	78	82750554	-	SAB0805	-	hypothetical protein
776	 37.50	+1	871068..871427	+	119	82750555	-	SAB0806	-	hypothetical protein
777	 35.57	0	871881..873089	+	402	82750556	-	SAB0807	-	NADH dehydrogenase
778	 33.60	0	873220..874695	+	491	82750557	-	SAB0808	-	cytosol aminopeptidase
779	 32.35	0	875106..876422	+	438	82750558	-	SAB0809	-	transporter protein
780	 32.53	0	876441..876815	+	124	82750559	-	SAB0810	-	hypothetical protein
781	 34.63	0	878382..879536	-	384	82750560	-	SAB0812c	-	hypothetical protein
782	 32.77	0	879799..880155	-	118	82750561	mnhG	SAB0813c	-	putative monovalent cation/H+ antiporter subunit G
783	 32.31	0	880133..880426	-	97	82750562	mnhF	SAB0814c	-	putative monovalent cation/H+ antiporter subunit F
784	 28.96	-1	880426..880905	-	159	82750563	mnhE	SAB0815c	-	putative monovalent cation/H+ antiporter subunit E
785	 33.60	0	880907..882403	-	498	82750564	mnhD	SAB0816c	-	putative monovalent cation/H+ antiporter subunit D
786	 34.21	0	882396..882737	-	113	82750565	mnhC	SAB0817c	-	putative monovalent cation/H+ antiporter subunit C
787	 33.33	0	882737..883165	-	142	82750566	mnhC	SAB0818c	-	putative monovalent cation/H+ antiporter subunit B
788	 33.50	0	883158..885563	-	801	82750567	mnhA	SAB0819c	-	monovalent cation/H+ antiporter subunit A
789	 33.07	0	885694..886077	-	127	82750568	-	SAB0820c	-	hypothetical protein
790	 35.35	0	886141..886734	+	197	82750569	-	SAB0821	-	peptidyl-prolyl cis-trans isomerase
791	 32.80	0	887150..887527	+	125	82750570	-	SAB0822	-	hypothetical protein
792	 36.88	+1	887888..889015	+	375	82750571	-	SAB0823	-	NADH-dependent flavin oxidoreductase
793	 35.68	0	889323..890513	+	396	82750572	rocD	SAB0824	-	ornithine--oxo-acid transaminase
794	 36.87	+1	890622..891866	+	414	82750573	-	SAB0825	-	NAD-specific glutamate dehydrogenase
795	 41.09	+2	891975..892103	-	42	82750574	-	SAB0826c	-	hypothetical protein
796	 33.01	0	892203..893132	-	309	82750575	glpQ	SAB0827c	-	glycerophosphoryl diester phosphodiesterase
797	 35.00	0	893374..894753	-	459	82750576	argH	SAB0828c	-	argininosuccinate lyase
798	 34.99	0	894743..895948	-	401	82750577	argG	SAB0829c	-	argininosuccinate synthase
799	 33.33	0	896299..897630	+	443	82750578	pgi	SAB0830	-	glucose-6-phosphate isomerase
800	 22.04	-2	898015..898200	+	61	82750579	-	SAB0831	-	hypothetical protein
801	 30.73	0	898503..899078	+	191	82750580	-	SAB0832	-	hypothetical protein
802	 31.62	0	899083..899607	+	174	82750581	spsA	SAB0833	-	type-I signal peptidase
803	 30.90	0	899623..900198	+	191	82750582	spsB	SAB0834	-	type-I signal peptidase
804	 32.44	0	900358..903834	+	1158	82750583	-	SAB0835	-	ATP-dependent nuclease subunit B
805	 33.25	0	903835..907488	+	1217	82750584	-	SAB0836	-	ATP-dependent nuclease subunit A
806	 33.11	0	907654..908556	+	300	82750585	-	SAB0837	-	fumarylacetoacetate hydrolase family protein
807	 32.05	0	908882..909271	+	129	82750586	-	SAB0838	-	hypothetical protein
808	 35.38	0	909442..910758	-	438	82750587	-	SAB0839c	-	coenzyme A disulfide reductase
809	 31.15	0	910810..911634	-	274	82750588	-	SAB0840c	-	hydrolase
810	 36.25	0	911748..912056	+	102	82750589	-	SAB0841	-	hypothetical protein
811	 33.79	0	914712..917321	+	869	82750590	clpB	SAB0843	-	putative ATP-dependent protease protein
812	 27.24	-1	917380..918249	-	289	82750591	-	SAB0844c	-	LysR family regulatory protein
813	 31.79	0	918442..918894	+	150	82750592	-	SAB0845	-	hypothetical protein
814	 32.41	0	919205..919639	+	144	82750593	-	SAB0846	-	hypothetical protein
815	 31.43	0	919819..920133	+	104	82750594	-	SAB0847	-	hypothetical protein
816	 35.67	0	920376..921317	+	313	82750595	fabH	SAB0848	-	3-oxoacyl-(acyl carrier protein) synthase III
817	 39.12	+1	921329..922573	+	414	82750596	fabF	SAB0849	-	3-oxoacyl-ACP synthase II
818	 30.83	0	922627..923943	-	438	82750597	-	SAB0850c	-	transposase
819	 26.88	-1	924142..924513	-	123	82750598	-	SAB0851c	-	hypothetical protein
820	 32.79	0	924756..925682	+	308	82750599	oppB	SAB0852	-	oligopeptide transport system permease protein
821	 34.17	0	925682..926752	+	356	82750600	oppC	SAB0853	-	oligopeptide transport system permease protein
822	 35.64	0	926768..927850	+	360	82750601	oppD	SAB0854	-	oligopeptide transport system ATP-binding protein
823	 32.80	0	927840..928781	+	313	82750602	oppF	SAB0855	-	oligopeptide transport system ATP-binding protein
33.03	MEAN

3.30	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.