IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.03   STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
25	 23.67	-2	34735..35634	+	299	82749802	-	SAB0025	-	hypothetical protein
26	 29.49	-1	36930..37709	+	259	82749803	-	SAB0026	-	enterotoxin protein
27	 38.75	+1	37894..38373	-	159	82749804	-	SAB0027c	-	hypothetical protein
28	 31.48	0	38856..39611	-	251	82749805	-	SAB0028c	-	hypothetical protein
29	 31.46	0	39611..39877	-	88	82749806	-	SAB0029c	-	hypothetical protein
30	 31.93	0	40008..41075	+	355	82749807	-	SAB0030	-	hypothetical protein
31	 33.18	0	41106..42440	+	444	82749808	-	SAB0031	-	hydroxyacylglutathione hydrolase
32	 32.75	0	42459..43652	+	397	82749809	-	SAB0032	-	sulfide-quinone reductase
33	 39.11	+1	44316..45302	-	328	82749810	-	SAB0033c	-	hypothetical protein
34	 24.02	-2	45611..45814	+	67	82749811	-	SAB0034	-	hypothetical protein
35	 31.31	0	45864..46160	+	98	82749812	-	SAB0035	-	hypothetical protein
36	 34.70	0	46608..47339	+	243	82749813	-	SAB0036	-	hypothetical protein
37	 31.51	0	47495..48043	+	182	82749814	-	SAB0037	-	hypothetical protein
38	 33.64	0	48181..49167	+	328	82749815	plc	SAB0038	-	1-phosphatidylinositol phosphodiesterase
39	 29.05	-1	50209..50979	+	256	82749816	-	SAB0040	-	hypothetical protein
40	 33.07	0	51063..53300	+	745	82749817	-	SAB0041	-	transcriptional regulator
41	 37.07	+1	53451..54629	+	392	82749818	-	SAB0042	-	aminoacylase
42	 36.65	+1	54631..56019	+	462	82749819	-	SAB0043	-	antibiotic resistance-related transmembrane efflux protein
43	 35.73	0	56508..58175	-	555	82749820	-	SAB0044c	-	membrane transporter
44	 35.25	0	58494..60269	-	591	82749821	-	SAB0045c	-	myosin-crossreactive streptococcal antigen-like protein
45	 31.27	0	60443..61315	-	290	82749822	-	SAB0046c	-	membrane transporter
46	 29.83	0	61429..62826	+	465	82749823	-	SAB0047	-	transcriptional regulator
47	 29.96	0	63016..63489	+	157	82749824	-	SAB0048	-	hypothetical protein
48	 34.59	0	63751..65343	+	530	82749825	lldP	SAB0049	-	L-lactate permease
49	 27.49	-1	67420..68172	-	250	82749826	sarS	SAB0051c	-	transcriptional regulator SarS
50	 36.95	+1	68541..69536	-	331	82749827	sirC	SAB0052c	-	siderophore transport protein
51	 39.26	+1	69533..70528	-	331	82749828	sirB	SAB0053c	-	siderophore transport protein
52	 32.33	0	70544..71536	-	330	82749829	sirA	SAB0054c	-	iron-regulated lipoprotein
53	 36.49	+1	71767..72747	+	326	82749830	-	SAB0055	-	cysteine synthase A protein
54	 36.89	+1	72744..73754	+	336	82749831	-	SAB0056	-	ornithine cyclodeaminase protein
55	 35.21	0	73775..75529	+	584	82749832	-	SAB0057	-	siderophore biosynthesis protein
56	 38.58	+1	75522..76778	+	418	82749833	-	SAB0058	-	membrane transporter
57	 36.44	+1	76768..78504	+	578	82749834	-	SAB0059	-	siderophore biosynthesis protein
58	 35.92	0	78485..80263	+	592	82749835	-	SAB0060	-	siderophore biosynthesis protein
59	 39.90	+2	80238..81014	+	258	82749836	-	SAB0061	-	aldolase
60	 36.82	+1	81014..82216	+	400	82749837	-	SAB0062	-	diaminopimelate decarboxylase protein
61	 37.39	+1	82220..82984	+	254	82749838	-	SAB0063	-	hypothetical protein
62	 29.18	-1	83609..84403	+	264	82749839	-	SAB0065	-	hypothetical protein
63	 40.80	+2	84615..85391	+	258	82749840	-	SAB0066	-	acetoin reductase
64	 31.79	0	85737..86708	+	323	82749841	-	SAB0067	-	UDP-glucose 4-epimerase
65	 33.62	0	86671..87363	+	230	82749842	cap5M	SAB0068	-	capsular polysaccharide biosynthesis glycosyltransferase
66	 33.59	0	87573..88739	+	388	82749843	cap8H	SAB0069	-	capsular glycosyltransferase
67	 30.51	0	88720..89958	+	412	82749844	cps2H	SAB0070	-	hypothetical protein
68	 31.73	0	89948..91378	+	476	82749845	-	SAB0071	-	lipopolysaccharide flipase protein
69	 35.17	0	91647..92246	+	199	82749846	sodM	SAB0072	-	manganese/iron superoxide dismutase
70	 34.99	0	92615..93340	+	241	82749847	-	SAB0073	-	surface protein
71	 35.22	0	93531..94271	-	246	82749848	-	SAB0074c	-	transcriptional regulator
72	 37.57	+1	94522..95229	+	235	82749849	deoD1	SAB0075	-	purine nucleoside phosphorylase
73	 31.86	0	95230..96588	+	452	82749850	-	SAB0076	-	membrane transporter
74	 39.97	+2	96669..97331	+	220	82749851	deoC1	SAB0077	-	deoxyribose-phosphate aldolase 1
75	 36.90	+1	97359..98537	+	392	82749852	drm	SAB0078	-	phosphopentomutase
76	 21.33	-2	98761..98985	-	74	82749853	-	SAB0079c	-	hypothetical protein
77	 29.63	-1	99008..99547	-	179	82749854	-	SAB0080c	-	hypothetical protein
78	 36.64	+1	99992..100807	-	271	82749855	-	SAB0081c	-	phosphonate ABC transporter permease
79	 34.50	0	101604..102377	-	257	82749856	-	SAB0083c	-	transport system protein
80	 30.83	0	102591..103547	-	318	82749857	-	SAB0084c	-	transport protein
81	 36.76	+1	103777..105321	+	514	82749858	-	SAB0085	-	hypothetical protein
82	 36.35	+1	105372..106865	+	497	82749859	cpdB	SAB0086	-	2',3'-cyclic-nucleotide 2'-phosphodiesterase
83	 28.32	-1	107836..109011	+	391	82749860	-	SAB0088	-	transcriptional regulator
84	 36.05	0	109399..112008	+	869	82749861	-	SAB0089	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
85	 29.45	-1	112353..113021	+	222	82749862	capA	SAB0090	-	capsular polysaccharide synthesis enzyme CapA
86	 32.90	0	113037..113723	+	228	82749863	capB	SAB0091	-	capsular polysaccharide synthesis enzyme CapB
87	 32.03	0	113726..114490	+	254	82749864	capC	SAB0092	-	capsular polysaccharide synthesis enzyme CapC
88	 34.92	0	114510..116333	+	607	82749865	capD	SAB0093	-	capsular polysaccharide synthesis enzyme CapD
89	 34.21	0	116323..117351	+	342	82749866	capE	SAB0094	-	capsular polysaccharide synthesis enzyme CapE
90	 34.50	0	117364..118473	+	369	82749867	capF	SAB0095	-	capsular polysaccharide synthesis enzyme CapF
91	 33.60	0	118477..119601	+	374	82749868	capG	SAB0096	-	capsular polysaccharide synthesis enzyme CapG
92	 27.31	-1	119604..120683	+	359	82749869	cap8H	SAB0097	-	capsular polysaccharide synthesis enzyme CapH
93	 28.75	-1	120676..122070	+	464	82749870	cap8I	SAB0098	-	capsular polysaccharide synthesis enzyme CapI
94	 32.62	0	122067..122624	+	185	82749871	cap8J	SAB0099	-	capsular polysaccharide synthesis enzyme CapJ
95	 27.20	-1	122633..123871	+	412	82749872	cap8K	SAB0100	-	capsular polysaccharide synthesis enzyme CapK
96	 35.16	0	123905..125110	+	401	82749873	capL	SAB0101	-	capsular polysaccharide synthesis enzyme CapL
97	 32.08	0	125121..125678	+	185	82749874	capM	SAB0102	-	capsular polysaccharide synthesis enzyme CapM
98	 33.11	0	125678..126565	+	295	82749875	capN	SAB0103	-	capsular polysaccharide synthesis enzyme CapN
99	 34.05	0	126619..127881	+	420	82749876	capO	SAB0104	-	capsular polysaccharide synthesis enzyme CapO
100	 36.14	0	127928..129103	+	391	82749877	capP	SAB0105	-	capsular polysaccharide synthesis enzyme CapP
101	 30.99	0	129501..129884	-	127	82749878	-	SAB0107c	-	hypothetical protein
102	 36.02	0	130311..131798	+	495	82749879	aldA	SAB0108	-	aldehyde dehdydrogenase
103	 32.19	0	132442..133401	+	319	82749880	-	SAB0109	-	cation-efflux system membrane protein
104	 31.37	0	133462..133665	-	67	82749881	-	SAB0110c	-	hypothetical protein
105	 33.72	0	133844..134356	+	170	82749882	-	SAB0111	-	hypothetical protein
106	 35.22	0	134697..135437	+	246	82749883	-	SAB0112	-	nitrate/nitrite system ATP-binding ABC transporter
107	 37.03	+1	135451..136425	+	324	82749884	-	SAB0113	-	lipoprotein
108	 35.43	0	136422..137183	+	253	82749885	-	SAB0114	-	ABC transporter permease
109	 35.47	0	137196..138227	+	343	82749886	-	SAB0115	-	hypothetical protein
110	 34.51	0	138444..138698	+	84	82749887	-	SAB0116	-	hypothetical protein
111	 34.93	0	138873..140000	+	375	82749888	-	SAB0117	-	formate dehydrogenase
112	 32.69	0	140385..141635	+	416	82749889	-	SAB0118	-	integral membrane transport protein
113	 34.95	0	142064..149254	+	2396	82749890	-	SAB0119	-	surfactin/siderophore synthetase
114	 33.80	0	149267..149911	+	214	82749891	-	SAB0120	-	4'-phosphopantetheinyl transferase superfamily protein
115	 35.35	0	150240..150734	-	164	82749892	-	SAB0121c	-	hypothetical protein
116	 34.89	0	151005..151775	-	256	82749893	-	SAB0122c	-	acetylglutamate kinase
117	 37.12	+1	151791..153032	-	413	82749894	argJ	SAB0123c	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
118	 37.89	+1	154114..155298	-	394	82749895	-	SAB0125c	-	ornithine aminotransferase
119	 32.82	0	155547..156902	-	451	82749896	-	SAB0126c	-	branched chain amino acid ABC transporter carrier protein
120	 35.48	0	157179..157736	-	185	82749897	-	SAB0127c	-	hydrolase
121	 36.26	0	157802..159442	-	546	82749898	-	SAB0128c	-	pyruvate decarboxylase
122	 38.12	+1	159714..161759	-	681	82749899	glcA	SAB0129c	-	phosphotransferase system enzyme II glucose-specific factor IIA
123	 35.07	0	162345..163379	+	344	82749900	-	SAB0130	-	hypothetical protein
124	 38.11	+1	163397..164296	+	299	82749901	murQ	SAB0131	-	N-acetylmuramic acid-6-phosphate etherase
33.03	MEAN

3.30	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.