IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.03   STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
649	 31.48	0	742682..743599	-	305	82750428	-	SAB0675c	-	multidrug resistance protein
650	 34.40	0	743881..745386	-	501	82750429	-	SAB0676c	-	peptide ABC transporter
651	 22.81	-2	745469..745696	-	75	82750430	-	SAB0677c	-	hypothetical protein
652	 32.93	0	745726..746226	-	166	82750431	-	SAB0678c	-	7-cyano-7-deazaguanine reductase
653	 33.22	0	746246..747112	-	288	82750432	-	SAB0679c	-	hypothetical protein
654	 23.97	-2	747497..747763	+	88	82750433	-	SAB0680	-	hypothetical protein
655	 34.09	0	747913..748311	+	132	82750434	nrdI	SAB0681	-	ribonucleotide reductase stimulatory protein
656	 32.90	0	748283..750379	+	698	82750435	rir1	SAB0682	-	ribonucleotide-diphosphate reductase subunit alpha
657	 32.72	0	750497..751468	+	323	82750436	nrdF	SAB0683	-	ribonucleotide-diphosphate reductase subunit beta
658	 41.79	+2	751533..751733	+	66	82750437	-	SAB0684	-	hypothetical protein
659	 32.30	0	752103..753074	+	323	82750438	sstA	SAB0685	-	FecCD family ferrichrome transporter permease
660	 29.69	-1	753086..754018	+	310	82750439	sstB	SAB0686	-	FecCD family ferrichrome ATP-binding ABC transporter
661	 29.54	-1	754893..755894	+	333	82750440	sstD	SAB0688	-	ferrichrome ABC transporter lipoprotein
662	 32.70	0	756155..756469	-	104	82750441	-	SAB0689c	-	hypothetical protein
663	 35.06	0	756487..757410	-	307	82750442	-	SAB0690c	-	UDP-N-acetylenolpyruvoylglucosamine reductase
664	 27.94	-1	757537..758055	-	172	82750443	-	SAB0691c	-	hypothetical protein
665	 27.72	-1	758151..759041	+	296	82750444	-	SAB0692	-	hypothetical protein
666	 32.09	0	759206..759526	+	106	82750445	-	SAB0693	-	hypothetical protein
667	 34.40	0	759949..761073	+	374	82750446	-	SAB0694	-	glycerate kinase
668	 35.13	0	761262..762488	-	408	82750447	pepT	SAB0695c	-	peptidase T
669	 33.33	0	762502..762996	-	164	82750448	-	SAB0696c	-	hypothetical protein
670	 35.43	0	763014..763775	-	253	82750449	-	SAB0697c	-	hypothetical protein
671	 30.63	0	763971..765041	-	356	82750450	-	SAB0698c	-	hypothetical protein
672	 31.06	0	765359..766414	+	351	82750451	-	SAB0699	-	lipophilic regulator protein
673	 33.96	0	766586..767227	-	213	82750452	-	SAB0700c	-	hypothetical protein
674	 33.91	0	767371..768237	+	288	82750453	-	SAB0701	-	hypothetical protein
675	 32.04	0	768601..769680	+	359	82750454	comFA	SAB0702	-	late competence operon protein FA
676	 30.97	0	769670..770347	+	225	82750455	comFC	SAB0703	-	hypothetical protein
677	 33.16	0	770408..770980	+	190	82750456	-	SAB0704	-	hypothetical protein
678	 34.99	0	771394..773925	+	843	82750457	secA	SAB0705	-	preprotein translocase subunit SecA
679	 36.66	+1	774358..775350	+	330	82750458	prfB	SAB0706	-	peptide chain release factor 2
680	 33.14	0	775800..776813	+	337	82750459	-	SAB0707	-	transposase
681	 35.71	0	777675..778475	+	266	82750460	-	SAB0708	-	hypothetical protein
682	 28.55	-1	778631..779299	+	222	82750461	-	SAB0709	-	hypothetical protein
683	 30.80	0	779296..779532	+	78	82750462	-	SAB0710	-	hypothetical protein
684	 34.74	0	779795..781786	+	663	82750463	uvrB	SAB0711	-	excinuclease ABC subunit B
685	 35.72	0	781794..784640	+	948	82750464	uvrA	SAB0712	-	exinuclease ABC subunit A
686	 35.58	0	785133..786065	+	310	82750465	hprK	SAB0713	-	HPr kinase/phosphorylase
687	 32.98	0	786071..786910	+	279	82750466	lgt	SAB0714	-	prolipoprotein diacylglyceryl transferase
688	 30.66	0	786918..787403	+	161	82750467	-	SAB0715	-	acetyltransferase
689	 29.65	-1	787411..788850	+	479	82750468	-	SAB0716	-	hypothetical protein
690	 37.39	+1	788917..789852	+	311	82750469	trxB	SAB0717	-	thioredoxin reductase
691	 43.67	+2	790024..790410	-	128	82750470	-	SAB0718c	-	hypothetical protein
692	 31.69	0	790617..791528	+	303	82750471	-	SAB0719	-	hypothetical protein
693	 33.33	0	791525..792520	+	331	82750472	-	SAB0720	-	hypothetical protein
694	 32.80	0	792631..793575	+	314	82750473	-	SAB0721	-	hypothetical protein
695	 34.35	0	794138..794725	+	195	82750474	clpP	SAB0722	-	ATP-dependent Clp protease proteolytic subunit
696	 33.94	0	794908..796542	+	544	82750475	-	SAB0723	-	malate dehydrogenase
697	 33.78	0	796749..797651	-	300	82750476	-	SAB0724c	-	hypothetical protein
698	 30.19	0	797835..797993	+	52	82750477	-	SAB0725	-	hypothetical protein
699	 35.71	0	798354..798983	+	209	82750478	-	SAB0726	-	hypothetical protein
700	 37.67	+1	799532..800545	+	337	82750479	gapR	SAB0727	-	glycolytic operon regulator
701	 37.88	+1	800598..801608	+	336	82750480	gap	SAB0728	-	glyceraldehyde-3-phosphate dehydrogenase
702	 34.34	0	801747..802937	+	396	82750481	pgk	SAB0729	-	phosphoglycerate kinase
703	 37.01	+1	803059..803820	+	253	82750482	tpiA	SAB0730	-	triosephosphate isomerase
704	 36.36	+1	803823..805340	+	505	82750483	pgm	SAB0731	-	phosphoglyceromutase
705	 37.09	+1	805470..806774	+	434	82750484	eno	SAB0732	-	enolase 2-phosphoglycerate dehydratase
706	 31.81	0	807114..807572	+	152	82750485	-	SAB0733	-	hypothetical protein
707	 29.91	0	807639..807872	+	77	82750486	secG	SAB0734	-	preprotein translocase subunit SecG
708	 34.28	0	808001..808741	+	246	82750487	-	SAB0735	-	carboxylesterase precursor
709	 34.89	0	808775..811147	+	790	82750488	rnr	SAB0736	-	ribonuclease R
710	 36.13	0	811169..811633	+	154	82750489	smpB	SAB0737	-	SsrA-binding protein
711	 34.81	0	812335..812604	+	89	82750490	-	SAB0738	-	transposase
712	 32.97	0	812840..813385	+	181	82750491	-	SAB0739	-	hypothetical protein
713	 23.18	-2	813995..814930	+	311	82750492	-	SAB0740	-	hypothetical protein
714	 27.62	-1	815114..815830	-	238	82750493	-	SAB0741c	-	hypothetical protein
715	 27.78	-1	816441..816962	+	173	82750494	-	SAB0742	-	hypothetical protein
716	 33.71	0	817101..817631	+	176	82750495	-	SAB0743	-	hypothetical protein
717	 39.25	+1	817944..820631	+	895	82750496	clfA	SAB0744	-	truncated clumping factor
718	 31.60	0	820852..822351	+	499	82750497	-	SAB0745	-	secreted von Willebrand factor-binding protein precursor
719	 32.06	0	822702..823721	+	339	82750498	-	SAB0746	-	extracellular matrix and plasma binding protein precursor
720	 30.59	0	824056..824565	+	169	82750499	-	SAB0747	-	hypothetical protein
721	 34.35	0	824906..825592	+	228	82750500	nuc	SAB0748	-	staphylococcal thermonuclease precursor
722	 39.80	+2	825949..826149	+	66	82750501	cspC	SAB0749	-	cold-shock protein C
723	 32.42	0	826644..826862	-	72	82750502	-	SAB0750c	-	hypothetical protein
724	 27.37	-1	826924..827208	-	94	82750503	-	SAB0751c	-	hypothetical protein
725	 30.88	0	827296..827865	-	189	82750504	-	SAB0752c	-	hypothetical protein
726	 29.10	-1	828053..828241	-	62	82750505	-	SAB0753c	-	hypothetical protein
727	 25.56	-2	828270..828539	-	89	82750506	-	SAB0754c	-	hypothetical protein
728	 26.75	-1	829071..829313	-	80	82750507	-	SAB0755c	-	hypothetical protein
729	 34.88	0	829532..830113	+	193	82750508	-	SAB0756	-	phosphoglycerate mutase
730	 30.42	0	830186..830803	-	205	82750509	-	SAB0757c	-	lysE type translocator protein
731	 29.70	-1	830959..831453	-	164	82750510	-	SAB0758c	-	hypothetical protein
732	 36.17	0	831851..832273	-	140	82750511	-	SAB0759c	-	hypothetical protein
733	 32.22	0	832421..833137	+	238	82750512	-	SAB0760	-	3-dehydroquinate dehydratase
734	 32.78	0	833220..833759	+	179	82750513	-	SAB0761	-	hypothetical protein
735	 34.27	0	833908..834228	-	106	82750514	-	SAB0762c	-	thioredoxin
736	 29.41	-1	834372..834728	+	118	82750515	-	SAB0763	-	hypothetical protein
737	 33.60	0	834886..835266	+	126	82750516	gcvH	SAB0764	-	glycine cleavage system protein H
738	 27.27	-1	837187..837483	+	98	82750517	-	SAB0767	-	hypothetical protein
739	 34.80	0	837733..838758	+	341	82750518	-	SAB0768	-	ATP-binding ABC transporter protein
740	 35.92	0	838751..839446	+	231	82750519	-	SAB0769	-	ABC transporter permease
741	 30.29	0	839464..840285	+	273	82750520	-	SAB0770	-	substrate-binding ABC transporter protein
742	 40.60	+2	840567..840800	+	77	82750521	-	SAB0771	-	hypothetical protein
743	 29.23	-1	840934..841128	+	64	82750522	-	SAB0772	-	hypothetical protein
744	 33.10	0	841362..842213	-	283	82750523	-	SAB0773c	-	hypothetical protein
745	 33.99	0	842541..843302	+	253	82750524	-	SAB0774	-	ATP-binding ABC transporter protein
746	 34.10	0	843400..844707	+	435	82750525	-	SAB0775	-	hypothetical protein
747	 37.12	+1	844822..846063	+	413	82750526	csdB	SAB0776	-	cysteine desulfurase
748	 36.13	0	846053..846517	+	154	82750527	-	SAB0777	-	nitrogen fixation protein
33.03	MEAN

3.30	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.