IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.03 STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
610	 31.28	0	701409..702335	+	308	82750389	-	SAB0636	-	cobalamin synthesis-related protein
611	 33.99	0	702438..703346	+	302	82750390	-	SAB0637	-	oxidoreductase
612	 27.08	-1	703381..703668	+	95	82750391	-	SAB0638	-	hypothetical protein
613	 35.01	0	703951..705504	+	517	82750392	-	SAB0639	-	membrane transporter
614	 32.39	0	705584..706963	+	459	82750393	-	SAB0640	-	DNA photolyase
615	 29.82	0	707035..707319	-	94	82750394	-	SAB0641c	-	hypothetical protein
616	 27.67	-1	707316..707933	-	205	82750395	-	SAB0642c	-	hypothetical protein
617	 32.15	0	708120..708542	-	140	82750396	-	SAB0643c	-	hypothetical protein
618	 32.73	0	708751..709917	+	388	82750397	norA	SAB0644	-	quinolone resistance protein
619	 27.37	-1	710210..710662	+	150	82750398	-	SAB0645	-	hypothetical protein
620	 35.40	0	710836..711318	+	160	82750399	-	SAB0646	-	transcriptional regulator protein
621	 31.89	0	711571..712332	+	253	82750400	-	SAB0647	-	transcriptional repressor of fructose operon
622	 36.26	0	712329..713249	+	306	82750401	-	SAB0648	-	fructose 1-phosphate kinase
623	 37.15	+1	713255..715219	+	654	82750402	fruA	SAB0649	-	fructose specific permease
624	 36.63	+1	715528..716709	+	393	82750403	-	SAB0650	-	N-acetylglucosamine-6-phosphate deacetylase
625	 32.52	0	716930..718279	+	449	82750404	-	SAB0651	-	magnesium and cobalt efflux protein
626	 32.14	0	718501..719340	+	279	82750405	-	SAB0652	-	oxidoreductase
627	 30.59	0	719472..720455	+	327	82750406	-	SAB0653	-	bactoprenol glucosyl transferase or stress response regulator
628	 30.40	0	720527..721582	-	351	82750407	saeS	SAB0654c	-	histidine protein kinase
629	 32.61	0	721582..722268	-	228	82750408	saeR	SAB0655c	-	response regulator
630	 33.76	0	722243..722716	-	157	82750409	-	SAB0656c	-	hypothetical protein
631	 30.84	0	723058..723498	-	146	82750410	-	SAB0657c	-	hypothetical protein
632	 25.64	-2	723778..724362	-	194	82750411	-	SAB0658c	-	hypothetical protein
633	 36.13	0	724461..725174	-	237	82750412	-	SAB0659c	-	coenzyme PQQ synthesis-like protein
634	 32.62	0	725178..725597	-	139	82750413	-	SAB0660c	-	6-pyruvoyl tetrahydrobiopterin synthase
635	 34.68	0	725599..726267	-	222	82750414	-	SAB0661c	-	aluminum resistance protein
636	 33.50	0	726618..727211	+	197	82750415	-	SAB0662	-	anthranilate/para-aminobenzoate synthase component II
637	 32.13	0	727186..728346	+	386	82750416	-	SAB0663	-	anthranilate/para-aminobenzoate synthase component I
638	 31.53	0	728346..728954	+	202	82750417	-	SAB0664	-	anthranilate/para-aminobenzoate synthase component I
639	 31.88	0	729020..729226	+	68	82750418	-	SAB0665	-	hypothetical protein
640	 29.82	0	729314..730024	+	236	82750419	-	SAB0666	-	hypothetical protein
641	 34.03	0	730008..731012	+	334	82750420	-	SAB0667	-	hypothetical protein
642	 31.17	0	731486..733426	+	646	82750421	-	SAB0668	-	transmembrane sulfatase
643	 33.01	0	733697..735580	+	627	82750422	-	SAB0669	-	ATP-binding ABC transporter protein
644	 32.10	0	735592..737373	+	593	82750423	-	SAB0670	-	ATP-dependent DNA helicase
645	 33.23	0	737595..738572	+	325	82750424	-	SAB0671	-	glycine betaine/carnitine/choline ATP-binding ABC transport protein
646	 31.55	0	738565..740079	+	504	82750425	-	SAB0672	-	glycine betaine/carnitine/choline ATP-binding ABC transport protein
647	 33.52	0	740318..741376	+	352	82750426	-	SAB0673	-	histidinol-phosphate aminotransferase
648	 32.41	0	741534..742076	+	180	82750427	-	SAB0674	-	hypothetical protein
649	 31.48	0	742682..743599	-	305	82750428	-	SAB0675c	-	multidrug resistance protein
650	 34.40	0	743881..745386	-	501	82750429	-	SAB0676c	-	peptide ABC transporter
651	 22.81	-2	745469..745696	-	75	82750430	-	SAB0677c	-	hypothetical protein
652	 32.93	0	745726..746226	-	166	82750431	-	SAB0678c	-	7-cyano-7-deazaguanine reductase
653	 33.22	0	746246..747112	-	288	82750432	-	SAB0679c	-	hypothetical protein
654	 23.97	-2	747497..747763	+	88	82750433	-	SAB0680	-	hypothetical protein
655	 34.09	0	747913..748311	+	132	82750434	nrdI	SAB0681	-	ribonucleotide reductase stimulatory protein
656	 32.90	0	748283..750379	+	698	82750435	rir1	SAB0682	-	ribonucleotide-diphosphate reductase subunit alpha
657	 32.72	0	750497..751468	+	323	82750436	nrdF	SAB0683	-	ribonucleotide-diphosphate reductase subunit beta
658	 41.79	+2	751533..751733	+	66	82750437	-	SAB0684	-	hypothetical protein
659	 32.30	0	752103..753074	+	323	82750438	sstA	SAB0685	-	FecCD family ferrichrome transporter permease
660	 29.69	-1	753086..754018	+	310	82750439	sstB	SAB0686	-	FecCD family ferrichrome ATP-binding ABC transporter
661	 29.54	-1	754893..755894	+	333	82750440	sstD	SAB0688	-	ferrichrome ABC transporter lipoprotein
662	 32.70	0	756155..756469	-	104	82750441	-	SAB0689c	-	hypothetical protein
663	 35.06	0	756487..757410	-	307	82750442	-	SAB0690c	-	UDP-N-acetylenolpyruvoylglucosamine reductase
664	 27.94	-1	757537..758055	-	172	82750443	-	SAB0691c	-	hypothetical protein
665	 27.72	-1	758151..759041	+	296	82750444	-	SAB0692	-	hypothetical protein
666	 32.09	0	759206..759526	+	106	82750445	-	SAB0693	-	hypothetical protein
667	 34.40	0	759949..761073	+	374	82750446	-	SAB0694	-	glycerate kinase
668	 35.13	0	761262..762488	-	408	82750447	pepT	SAB0695c	-	peptidase T
669	 33.33	0	762502..762996	-	164	82750448	-	SAB0696c	-	hypothetical protein
670	 35.43	0	763014..763775	-	253	82750449	-	SAB0697c	-	hypothetical protein
671	 30.63	0	763971..765041	-	356	82750450	-	SAB0698c	-	hypothetical protein
672	 31.06	0	765359..766414	+	351	82750451	-	SAB0699	-	lipophilic regulator protein
673	 33.96	0	766586..767227	-	213	82750452	-	SAB0700c	-	hypothetical protein
674	 33.91	0	767371..768237	+	288	82750453	-	SAB0701	-	hypothetical protein
675	 32.04	0	768601..769680	+	359	82750454	comFA	SAB0702	-	late competence operon protein FA
676	 30.97	0	769670..770347	+	225	82750455	comFC	SAB0703	-	hypothetical protein
677	 33.16	0	770408..770980	+	190	82750456	-	SAB0704	-	hypothetical protein
678	 34.99	0	771394..773925	+	843	82750457	secA	SAB0705	-	preprotein translocase subunit SecA
679	 36.66	+1	774358..775350	+	330	82750458	prfB	SAB0706	-	peptide chain release factor 2
680	 33.14	0	775800..776813	+	337	82750459	-	SAB0707	-	transposase
681	 35.71	0	777675..778475	+	266	82750460	-	SAB0708	-	hypothetical protein
682	 28.55	-1	778631..779299	+	222	82750461	-	SAB0709	-	hypothetical protein
683	 30.80	0	779296..779532	+	78	82750462	-	SAB0710	-	hypothetical protein
684	 34.74	0	779795..781786	+	663	82750463	uvrB	SAB0711	-	excinuclease ABC subunit B
685	 35.72	0	781794..784640	+	948	82750464	uvrA	SAB0712	-	exinuclease ABC subunit A
686	 35.58	0	785133..786065	+	310	82750465	hprK	SAB0713	-	HPr kinase/phosphorylase
687	 32.98	0	786071..786910	+	279	82750466	lgt	SAB0714	-	prolipoprotein diacylglyceryl transferase
688	 30.66	0	786918..787403	+	161	82750467	-	SAB0715	-	acetyltransferase
689	 29.65	-1	787411..788850	+	479	82750468	-	SAB0716	-	hypothetical protein
690	 37.39	+1	788917..789852	+	311	82750469	trxB	SAB0717	-	thioredoxin reductase
691	 43.67	+2	790024..790410	-	128	82750470	-	SAB0718c	-	hypothetical protein
692	 31.69	0	790617..791528	+	303	82750471	-	SAB0719	-	hypothetical protein
693	 33.33	0	791525..792520	+	331	82750472	-	SAB0720	-	hypothetical protein
694	 32.80	0	792631..793575	+	314	82750473	-	SAB0721	-	hypothetical protein
695	 34.35	0	794138..794725	+	195	82750474	clpP	SAB0722	-	ATP-dependent Clp protease proteolytic subunit
696	 33.94	0	794908..796542	+	544	82750475	-	SAB0723	-	malate dehydrogenase
697	 33.78	0	796749..797651	-	300	82750476	-	SAB0724c	-	hypothetical protein
698	 30.19	0	797835..797993	+	52	82750477	-	SAB0725	-	hypothetical protein
699	 35.71	0	798354..798983	+	209	82750478	-	SAB0726	-	hypothetical protein
700	 37.67	+1	799532..800545	+	337	82750479	gapR	SAB0727	-	glycolytic operon regulator
701	 37.88	+1	800598..801608	+	336	82750480	gap	SAB0728	-	glyceraldehyde-3-phosphate dehydrogenase
702	 34.34	0	801747..802937	+	396	82750481	pgk	SAB0729	-	phosphoglycerate kinase
703	 37.01	+1	803059..803820	+	253	82750482	tpiA	SAB0730	-	triosephosphate isomerase
704	 36.36	+1	803823..805340	+	505	82750483	pgm	SAB0731	-	phosphoglyceromutase
705	 37.09	+1	805470..806774	+	434	82750484	eno	SAB0732	-	enolase 2-phosphoglycerate dehydratase
706	 31.81	0	807114..807572	+	152	82750485	-	SAB0733	-	hypothetical protein
707	 29.91	0	807639..807872	+	77	82750486	secG	SAB0734	-	preprotein translocase subunit SecG
708	 34.28	0	808001..808741	+	246	82750487	-	SAB0735	-	carboxylesterase precursor
709	 34.89	0	808775..811147	+	790	82750488	rnr	SAB0736	-	ribonuclease R
33.03	MEAN

3.30	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.