IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.03   STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
565	 32.58	0	655502..655900	+	132	82750344	tagD	SAB0591	-	glycerol-3-phosphate cytidylyltransferase
566	 34.57	0	656017..657312	-	431	82750345	pbp4	SAB0592c	-	penicillin binding protein 4
567	 33.10	0	657733..659460	+	575	82750346	-	SAB0593	-	ATP-binding cassette transporter A
568	 34.31	0	659815..661044	+	409	82750347	-	SAB0594	-	nucleoside transport protein
569	 33.57	0	661569..662402	+	277	82750348	-	SAB0595	-	hypothetical protein
570	 34.71	0	662682..663479	+	265	82750349	fhuA	SAB0596	-	ferrichrome transport ATP-binding protein
571	 36.02	0	663515..664519	+	334	82750350	fhuB	SAB0597	-	ferrichrome transport permease
572	 35.59	0	664516..665532	+	338	82750351	fhuD	SAB0598	-	ferrichrome transport permease
573	 35.09	0	665766..666734	+	322	82750352	-	SAB0599	-	dihydroxyacetone kinase
574	 35.38	0	666776..667360	+	194	82750353	-	SAB0600	-	dihydroxyacetone kinase
575	 34.71	0	667353..667715	+	120	82750354	-	SAB0601	-	hypothetical protein
576	 32.53	0	667831..668328	+	165	82750355	-	SAB0602	-	hypothetical protein
577	 32.96	0	668785..669852	+	355	82750356	-	SAB0603	-	hypothetical protein
578	 30.56	0	670003..671046	+	347	82750357	-	SAB0604	-	lipase
579	 27.51	-1	671375..671803	+	142	82750358	-	SAB0605	-	hypothetical protein
580	 33.93	0	672010..672516	-	168	82750359	-	SAB0606c	-	hypothetical protein
581	 31.39	0	672629..673552	+	307	82750360	-	SAB0607	-	hypothetical protein
582	 30.22	0	673568..674242	+	224	82750361	-	SAB0608	-	two-component response regulator
583	 30.36	0	674235..675275	+	346	82750362	-	SAB0609	-	two-component sensor histidine kinase
584	 31.36	0	675419..676180	+	253	82750363	-	SAB0610	-	ATP-binding ABC transport protein
585	 28.73	-1	676170..678059	+	629	82750364	-	SAB0611	-	ABC transporter permease
586	 28.16	-1	678784..679401	+	205	82750365	-	SAB0612	-	hypothetical protein
587	 36.90	+1	679417..680424	+	335	82750366	-	SAB0613	-	low-affinity inorganic phosphate transporter
588	 37.84	+1	681011..681808	-	265	82750367	-	SAB0614c	-	secretory antigen SsaA-like protein
589	 29.30	-1	682169..682813	+	214	82750368	-	SAB0615	-	hypothetical protein
590	 26.82	-1	683507..685657	+	716	82750369	-	SAB0616	-	transcriptional regulator
591	 25.12	-2	685737..686162	+	141	82750370	-	SAB0617	-	hypothetical protein
592	 35.98	0	686352..687068	+	238	82750371	-	SAB0618	-	hypothetical protein
593	 33.54	0	687068..687541	+	157	82750372	-	SAB0619	-	hypothetical protein
594	 29.15	-1	687894..688538	+	214	82750373	-	SAB0620	-	hypothetical protein
595	 32.64	0	688654..689520	+	288	82750374	-	SAB0621	-	LysR family transcriptional regulator
596	 32.19	0	689654..690874	+	406	82750375	-	SAB0622	-	sugar efflux transporter
597	 30.27	0	690871..691359	+	162	82750376	-	SAB0623	-	hypothetical protein
598	 27.97	-1	691458..692147	-	229	82750377	-	SAB0624c	-	hypothetical protein
599	 29.73	0	692274..692717	+	147	82750378	-	SAB0625	-	hypothetical protein
600	 29.23	-1	692790..693179	+	129	82750379	-	SAB0626	-	hypothetical protein
601	 33.33	0	693317..693616	+	99	82750380	-	SAB0627	-	hypothetical protein
602	 33.70	0	693696..694238	+	180	82750381	-	SAB0628	-	hypothetical protein
603	 36.33	+1	694334..694900	-	188	82750382	-	SAB0629c	-	hypothetical protein
604	 33.55	0	694902..695360	-	152	82750383	-	SAB0630c	-	hypothetical protein
605	 30.37	0	695369..696178	-	269	82750384	-	SAB0631c	-	hypothetical protein
606	 32.99	0	696217..697092	-	291	82750385	bacA	SAB0632c	-	undecaprenyl pyrophosphate phosphatase
607	 31.92	0	697311..698942	+	543	82750386	-	SAB0633	-	ABC transporter ATP-binding protein
608	 32.74	0	698939..700612	+	557	82750387	-	SAB0634	-	ABC transporter ATP-binding protein
609	 32.88	0	700739..701182	-	147	82750388	-	SAB0635c	-	MarR family transcriptional regulator
610	 31.28	0	701409..702335	+	308	82750389	-	SAB0636	-	cobalamin synthesis-related protein
611	 33.99	0	702438..703346	+	302	82750390	-	SAB0637	-	oxidoreductase
612	 27.08	-1	703381..703668	+	95	82750391	-	SAB0638	-	hypothetical protein
613	 35.01	0	703951..705504	+	517	82750392	-	SAB0639	-	membrane transporter
614	 32.39	0	705584..706963	+	459	82750393	-	SAB0640	-	DNA photolyase
615	 29.82	0	707035..707319	-	94	82750394	-	SAB0641c	-	hypothetical protein
616	 27.67	-1	707316..707933	-	205	82750395	-	SAB0642c	-	hypothetical protein
617	 32.15	0	708120..708542	-	140	82750396	-	SAB0643c	-	hypothetical protein
618	 32.73	0	708751..709917	+	388	82750397	norA	SAB0644	-	quinolone resistance protein
619	 27.37	-1	710210..710662	+	150	82750398	-	SAB0645	-	hypothetical protein
620	 35.40	0	710836..711318	+	160	82750399	-	SAB0646	-	transcriptional regulator protein
621	 31.89	0	711571..712332	+	253	82750400	-	SAB0647	-	transcriptional repressor of fructose operon
622	 36.26	0	712329..713249	+	306	82750401	-	SAB0648	-	fructose 1-phosphate kinase
623	 37.15	+1	713255..715219	+	654	82750402	fruA	SAB0649	-	fructose specific permease
624	 36.63	+1	715528..716709	+	393	82750403	-	SAB0650	-	N-acetylglucosamine-6-phosphate deacetylase
625	 32.52	0	716930..718279	+	449	82750404	-	SAB0651	-	magnesium and cobalt efflux protein
626	 32.14	0	718501..719340	+	279	82750405	-	SAB0652	-	oxidoreductase
627	 30.59	0	719472..720455	+	327	82750406	-	SAB0653	-	bactoprenol glucosyl transferase or stress response regulator
628	 30.40	0	720527..721582	-	351	82750407	saeS	SAB0654c	-	histidine protein kinase
629	 32.61	0	721582..722268	-	228	82750408	saeR	SAB0655c	-	response regulator
630	 33.76	0	722243..722716	-	157	82750409	-	SAB0656c	-	hypothetical protein
631	 30.84	0	723058..723498	-	146	82750410	-	SAB0657c	-	hypothetical protein
632	 25.64	-2	723778..724362	-	194	82750411	-	SAB0658c	-	hypothetical protein
633	 36.13	0	724461..725174	-	237	82750412	-	SAB0659c	-	coenzyme PQQ synthesis-like protein
634	 32.62	0	725178..725597	-	139	82750413	-	SAB0660c	-	6-pyruvoyl tetrahydrobiopterin synthase
635	 34.68	0	725599..726267	-	222	82750414	-	SAB0661c	-	aluminum resistance protein
636	 33.50	0	726618..727211	+	197	82750415	-	SAB0662	-	anthranilate/para-aminobenzoate synthase component II
637	 32.13	0	727186..728346	+	386	82750416	-	SAB0663	-	anthranilate/para-aminobenzoate synthase component I
638	 31.53	0	728346..728954	+	202	82750417	-	SAB0664	-	anthranilate/para-aminobenzoate synthase component I
639	 31.88	0	729020..729226	+	68	82750418	-	SAB0665	-	hypothetical protein
640	 29.82	0	729314..730024	+	236	82750419	-	SAB0666	-	hypothetical protein
641	 34.03	0	730008..731012	+	334	82750420	-	SAB0667	-	hypothetical protein
642	 31.17	0	731486..733426	+	646	82750421	-	SAB0668	-	transmembrane sulfatase
643	 33.01	0	733697..735580	+	627	82750422	-	SAB0669	-	ATP-binding ABC transporter protein
644	 32.10	0	735592..737373	+	593	82750423	-	SAB0670	-	ATP-dependent DNA helicase
645	 33.23	0	737595..738572	+	325	82750424	-	SAB0671	-	glycine betaine/carnitine/choline ATP-binding ABC transport protein
646	 31.55	0	738565..740079	+	504	82750425	-	SAB0672	-	glycine betaine/carnitine/choline ATP-binding ABC transport protein
647	 33.52	0	740318..741376	+	352	82750426	-	SAB0673	-	histidinol-phosphate aminotransferase
648	 32.41	0	741534..742076	+	180	82750427	-	SAB0674	-	hypothetical protein
649	 31.48	0	742682..743599	-	305	82750428	-	SAB0675c	-	multidrug resistance protein
650	 34.40	0	743881..745386	-	501	82750429	-	SAB0676c	-	peptide ABC transporter
651	 22.81	-2	745469..745696	-	75	82750430	-	SAB0677c	-	hypothetical protein
652	 32.93	0	745726..746226	-	166	82750431	-	SAB0678c	-	7-cyano-7-deazaguanine reductase
653	 33.22	0	746246..747112	-	288	82750432	-	SAB0679c	-	hypothetical protein
654	 23.97	-2	747497..747763	+	88	82750433	-	SAB0680	-	hypothetical protein
655	 34.09	0	747913..748311	+	132	82750434	nrdI	SAB0681	-	ribonucleotide reductase stimulatory protein
656	 32.90	0	748283..750379	+	698	82750435	rir1	SAB0682	-	ribonucleotide-diphosphate reductase subunit alpha
657	 32.72	0	750497..751468	+	323	82750436	nrdF	SAB0683	-	ribonucleotide-diphosphate reductase subunit beta
658	 41.79	+2	751533..751733	+	66	82750437	-	SAB0684	-	hypothetical protein
659	 32.30	0	752103..753074	+	323	82750438	sstA	SAB0685	-	FecCD family ferrichrome transporter permease
660	 29.69	-1	753086..754018	+	310	82750439	sstB	SAB0686	-	FecCD family ferrichrome ATP-binding ABC transporter
661	 29.54	-1	754893..755894	+	333	82750440	sstD	SAB0688	-	ferrichrome ABC transporter lipoprotein
662	 32.70	0	756155..756469	-	104	82750441	-	SAB0689c	-	hypothetical protein
663	 35.06	0	756487..757410	-	307	82750442	-	SAB0690c	-	UDP-N-acetylenolpyruvoylglucosamine reductase
664	 27.94	-1	757537..758055	-	172	82750443	-	SAB0691c	-	hypothetical protein
33.03	MEAN

3.30	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.