IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.03   STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
524	 26.83	-1	613195..613824	+	209	82750303	-	SAB0548	-	hypothetical protein
525	 23.68	-2	614042..614590	+	182	82750304	-	SAB0549	-	hypothetical protein
526	 25.78	-2	614627..615169	+	180	82750305	-	SAB0550	-	hypothetical protein
527	 25.84	-2	615494..616120	+	208	82750306	-	SAB0551	-	hypothetical protein
528	 34.61	0	616390..617328	+	312	82750307	-	SAB0552	-	oxidoreductase
529	 34.82	0	617538..618074	+	178	82750308	-	SAB0553	-	hypothetical protein
530	 31.45	0	618243..618719	+	158	82750309	-	SAB0554	-	hypothetical protein
531	 32.87	0	618759..620054	+	431	82750310	-	SAB0555	-	hypothetical protein
532	 32.74	0	620097..620603	+	168	82750311	-	SAB0556	-	hypothetical protein
533	 36.20	0	621102..622112	+	336	82750312	adhA	SAB0557	-	alcohol dehydrogenase
534	 31.70	0	622375..622803	+	142	82750313	-	SAB0558	-	hypothetical protein
535	 33.09	0	622800..624461	+	553	82750314	argS	SAB0559	-	arginyl-tRNA synthetase
536	 28.46	-1	626171..626806	+	211	82750315	-	SAB0561	-	DNA repair endonuclease
537	 31.76	0	627054..627941	+	295	82750316	-	SAB0562	-	iron-binding transport protein
538	 31.76	0	628092..629042	+	316	82750317	-	SAB0563	-	iron(III) ABC transporter permease protein
539	 30.56	0	629097..629816	+	239	82750318	-	SAB0564	-	haloacid dehalogenase hydrolase
540	 32.21	0	629800..630600	+	266	82750319	-	SAB0565	-	hydrolase
541	 31.36	0	630736..631242	+	168	82750320	-	SAB0566	-	hypothetical protein
542	 26.22	-2	631404..632120	+	238	82750321	-	SAB0567	-	hypothetical protein
543	 30.16	0	632288..633076	+	262	82750322	-	SAB0568	-	esterase or lipase
544	 27.47	-1	633329..633703	-	124	82750323	sarA	SAB0569c	-	staphylococcal accessory regulator A
545	 30.86	0	634651..635580	-	309	82750324	-	SAB0570c	-	hypothetical protein
546	 30.12	0	636378..636938	+	186	82750325	-	SAB0572	-	phage recombinase/integrase
547	 32.13	0	636957..639359	+	800	82750326	-	SAB0573	-	putative monovalent cation/H+ antiporter subunit A
548	 32.63	0	639346..639771	+	141	82750327	-	SAB0574	-	putative monovalent cation/H+ antiporter subunit B
549	 30.72	0	639768..640112	+	114	82750328	-	SAB0575	-	putative monovalent cation/H+ antiporter subunit C
550	 33.47	0	640102..641598	+	498	82750329	-	SAB0576	-	putative monovalent cation/H+ antiporter subunit D
551	 26.50	-1	641599..642081	+	160	82750330	-	SAB0577	-	putative monovalent cation/H+ antiporter subunit E
552	 33.00	0	642078..642380	+	100	82750331	-	SAB0578	-	putative monovalent cation/H+ antiporter subunit F
553	 33.33	0	642355..642792	+	145	82750332	-	SAB0579	-	putative monovalent cation/H+ antiporter subunit G
554	 31.72	0	643132..645174	+	680	82750333	-	SAB0580	-	sodium-hydrogen exhange family protein
555	 31.72	0	646068..646997	-	309	82750334	mntC	SAB0581c	-	iron-repressed lipoprotein
556	 32.14	0	646994..647830	-	278	82750335	mntB	SAB0582c	-	cation ABC transporter
557	 33.33	0	647824..648567	-	247	82750336	mntA	SAB0583c	-	cation ATP-binding ABC transporter
558	 30.70	0	648689..649333	+	214	82750337	mntR	SAB0584	-	iron dependent repressor
559	 30.41	0	649413..650165	-	250	82750338	-	SAB0585c	-	hypothetical protein
560	 34.12	0	650401..651165	+	254	82750339	tagA	SAB0586	-	teichoic acid biosynthesis protein
561	 34.07	0	651226..652041	-	271	82750340	tagH	SAB0587c	-	teichoic acids export protein ATP-binding subunit
562	 31.18	0	652346..653179	+	277	82750341	tagG	SAB0588	-	teichoic acid translocation permease protein
563	 32.25	0	653278..654381	+	367	82750342	tagB	SAB0589	-	teichoic acid biosynthesis protein
564	 32.11	0	654378..655439	+	353	82750343	-	SAB0590	-	teichoic acid biosynthesis enzyme
565	 32.58	0	655502..655900	+	132	82750344	tagD	SAB0591	-	glycerol-3-phosphate cytidylyltransferase
566	 34.57	0	656017..657312	-	431	82750345	pbp4	SAB0592c	-	penicillin binding protein 4
567	 33.10	0	657733..659460	+	575	82750346	-	SAB0593	-	ATP-binding cassette transporter A
568	 34.31	0	659815..661044	+	409	82750347	-	SAB0594	-	nucleoside transport protein
569	 33.57	0	661569..662402	+	277	82750348	-	SAB0595	-	hypothetical protein
570	 34.71	0	662682..663479	+	265	82750349	fhuA	SAB0596	-	ferrichrome transport ATP-binding protein
571	 36.02	0	663515..664519	+	334	82750350	fhuB	SAB0597	-	ferrichrome transport permease
572	 35.59	0	664516..665532	+	338	82750351	fhuD	SAB0598	-	ferrichrome transport permease
573	 35.09	0	665766..666734	+	322	82750352	-	SAB0599	-	dihydroxyacetone kinase
574	 35.38	0	666776..667360	+	194	82750353	-	SAB0600	-	dihydroxyacetone kinase
575	 34.71	0	667353..667715	+	120	82750354	-	SAB0601	-	hypothetical protein
576	 32.53	0	667831..668328	+	165	82750355	-	SAB0602	-	hypothetical protein
577	 32.96	0	668785..669852	+	355	82750356	-	SAB0603	-	hypothetical protein
578	 30.56	0	670003..671046	+	347	82750357	-	SAB0604	-	lipase
579	 27.51	-1	671375..671803	+	142	82750358	-	SAB0605	-	hypothetical protein
580	 33.93	0	672010..672516	-	168	82750359	-	SAB0606c	-	hypothetical protein
581	 31.39	0	672629..673552	+	307	82750360	-	SAB0607	-	hypothetical protein
582	 30.22	0	673568..674242	+	224	82750361	-	SAB0608	-	two-component response regulator
583	 30.36	0	674235..675275	+	346	82750362	-	SAB0609	-	two-component sensor histidine kinase
584	 31.36	0	675419..676180	+	253	82750363	-	SAB0610	-	ATP-binding ABC transport protein
585	 28.73	-1	676170..678059	+	629	82750364	-	SAB0611	-	ABC transporter permease
586	 28.16	-1	678784..679401	+	205	82750365	-	SAB0612	-	hypothetical protein
587	 36.90	+1	679417..680424	+	335	82750366	-	SAB0613	-	low-affinity inorganic phosphate transporter
588	 37.84	+1	681011..681808	-	265	82750367	-	SAB0614c	-	secretory antigen SsaA-like protein
589	 29.30	-1	682169..682813	+	214	82750368	-	SAB0615	-	hypothetical protein
590	 26.82	-1	683507..685657	+	716	82750369	-	SAB0616	-	transcriptional regulator
591	 25.12	-2	685737..686162	+	141	82750370	-	SAB0617	-	hypothetical protein
592	 35.98	0	686352..687068	+	238	82750371	-	SAB0618	-	hypothetical protein
593	 33.54	0	687068..687541	+	157	82750372	-	SAB0619	-	hypothetical protein
594	 29.15	-1	687894..688538	+	214	82750373	-	SAB0620	-	hypothetical protein
595	 32.64	0	688654..689520	+	288	82750374	-	SAB0621	-	LysR family transcriptional regulator
596	 32.19	0	689654..690874	+	406	82750375	-	SAB0622	-	sugar efflux transporter
597	 30.27	0	690871..691359	+	162	82750376	-	SAB0623	-	hypothetical protein
598	 27.97	-1	691458..692147	-	229	82750377	-	SAB0624c	-	hypothetical protein
599	 29.73	0	692274..692717	+	147	82750378	-	SAB0625	-	hypothetical protein
600	 29.23	-1	692790..693179	+	129	82750379	-	SAB0626	-	hypothetical protein
601	 33.33	0	693317..693616	+	99	82750380	-	SAB0627	-	hypothetical protein
602	 33.70	0	693696..694238	+	180	82750381	-	SAB0628	-	hypothetical protein
603	 36.33	+1	694334..694900	-	188	82750382	-	SAB0629c	-	hypothetical protein
604	 33.55	0	694902..695360	-	152	82750383	-	SAB0630c	-	hypothetical protein
605	 30.37	0	695369..696178	-	269	82750384	-	SAB0631c	-	hypothetical protein
606	 32.99	0	696217..697092	-	291	82750385	bacA	SAB0632c	-	undecaprenyl pyrophosphate phosphatase
607	 31.92	0	697311..698942	+	543	82750386	-	SAB0633	-	ABC transporter ATP-binding protein
608	 32.74	0	698939..700612	+	557	82750387	-	SAB0634	-	ABC transporter ATP-binding protein
609	 32.88	0	700739..701182	-	147	82750388	-	SAB0635c	-	MarR family transcriptional regulator
610	 31.28	0	701409..702335	+	308	82750389	-	SAB0636	-	cobalamin synthesis-related protein
611	 33.99	0	702438..703346	+	302	82750390	-	SAB0637	-	oxidoreductase
612	 27.08	-1	703381..703668	+	95	82750391	-	SAB0638	-	hypothetical protein
613	 35.01	0	703951..705504	+	517	82750392	-	SAB0639	-	membrane transporter
614	 32.39	0	705584..706963	+	459	82750393	-	SAB0640	-	DNA photolyase
615	 29.82	0	707035..707319	-	94	82750394	-	SAB0641c	-	hypothetical protein
616	 27.67	-1	707316..707933	-	205	82750395	-	SAB0642c	-	hypothetical protein
617	 32.15	0	708120..708542	-	140	82750396	-	SAB0643c	-	hypothetical protein
618	 32.73	0	708751..709917	+	388	82750397	norA	SAB0644	-	quinolone resistance protein
619	 27.37	-1	710210..710662	+	150	82750398	-	SAB0645	-	hypothetical protein
620	 35.40	0	710836..711318	+	160	82750399	-	SAB0646	-	transcriptional regulator protein
621	 31.89	0	711571..712332	+	253	82750400	-	SAB0647	-	transcriptional repressor of fructose operon
622	 36.26	0	712329..713249	+	306	82750401	-	SAB0648	-	fructose 1-phosphate kinase
623	 37.15	+1	713255..715219	+	654	82750402	fruA	SAB0649	-	fructose specific permease
33.03	MEAN

3.30	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.