IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.03   STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
436	 33.08	0	504369..504761	+	130	82750214	-	SAB0456	-	hypothetical protein
437	 33.83	0	504866..505267	+	133	82750215	-	SAB0457	-	hypothetical protein
438	 30.79	0	505447..506742	+	431	82750216	-	SAB0458	-	hypothetical protein
439	 30.74	0	506747..507286	+	179	82750217	hpt	SAB0459	-	hypoxanthine-guanine phosphoribosyltransferase
440	 35.63	0	507544..509637	+	697	82750218	ftsH	SAB0460	-	cell division protein
441	 36.62	+1	510107..510988	+	293	82750219	-	SAB0461	-	heat shock chaperonin protein 33
442	 37.51	+1	511167..512099	+	310	82750220	-	SAB0462	-	cysteine synthase
443	 36.94	+1	512315..513118	+	267	82750221	folP	SAB0463	-	dihydropteroate synthase
444	 35.52	0	513096..513461	+	121	82750222	folB	SAB0464	-	dihydroneopterin aldolase
445	 33.75	0	513458..513934	+	158	82750223	folK	SAB0465	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
446	 34.81	0	514473..515960	+	495	82750224	lysS	SAB0466	-	lysyl-tRNA synthetase
447	 29.36	-1	524654..526036	-	460	82750225	-	SAB0468c	-	GntR family transcriptional regulator
448	 39.50	+1	526153..527028	+	291	82750226	-	SAB0469	-	pyridoxine biosynthesis protein
449	 33.69	0	527032..527592	+	186	82750227	-	SAB0470	-	glutamine amidotransferase subunit PdxT
450	 33.25	0	527800..529014	-	404	82750228	nupC	SAB0471c	-	pyrimidine nucleoside transport protein
451	 31.60	0	529172..529633	+	153	82750229	-	SAB0472	-	transcriptional repressor of stress genes
452	 33.86	0	529652..530218	+	188	82750230	-	SAB0473	-	hypothetical protein
453	 32.34	0	530208..531215	+	335	82750231	-	SAB0474	-	ATP:guanido phosphotransferase
454	 34.19	0	531229..533685	+	818	82750232	clpC	SAB0475	-	endopeptidase
455	 37.07	+1	534176..535540	+	454	82750233	radA	SAB0476	-	DNA repair protein RadA
456	 30.45	0	535565..536638	+	357	82750234	-	SAB0477	-	hypothetical protein
457	 34.23	0	537195..538649	+	484	82750235	gltX	SAB0478	-	glutamyl-tRNA synthetase
458	 35.49	0	539073..539720	+	215	82750236	cysE	SAB0479	-	serine acetyltransferase
459	 32.76	0	539704..541104	+	466	82750237	cysS	SAB0480	-	cysteinyl-tRNA synthetase
460	 31.60	0	541097..541501	+	134	82750238	-	SAB0481	-	hypothetical protein
461	 35.21	0	541509..542255	+	248	82750239	-	SAB0482	-	tRNA/rRNA methyltransferase
462	 33.33	0	542255..542779	+	174	82750240	-	SAB0483	-	hypothetical protein
463	 28.07	-1	542860..543429	+	189	82750241	-	SAB0484	-	hypothetical protein
464	 32.64	0	543544..543687	+	47	82750242	rpmG	SAB0485	-	50S ribosomal protein L33
465	 28.96	-1	543743..543925	+	60	82750243	secE	SAB0486	-	preprotein translocase subunit SecE
466	 35.52	0	543938..544486	+	182	82750244	nusG	SAB0487	-	transcription antitermination protein
467	 38.53	+1	544667..545089	+	140	82750245	rplK	SAB0488	-	50S ribosomal protein L11
468	 36.51	+1	545297..545989	+	230	82750246	rplA	SAB0489	-	50S ribosomal protein L1
469	 37.13	+1	546261..546761	+	166	82750247	rplJ	SAB0490	-	50S ribosomal protein L10
470	 33.83	0	547344..547952	+	202	82750249	-	SAB0492	-	hypothetical protein
471	 37.73	+1	548167..551718	+	1183	82750250	rpoB	SAB0493	-	DNA-directed RNA polymerase subunit beta
472	 36.15	0	551855..555478	+	1207	82750251	rpoC	SAB0494	-	DNA-directed RNA polymerase subunit beta'
473	 31.85	0	555600..555869	+	89	82750252	-	SAB0495	-	putative ribosomal protein L7Ae-like
474	 37.44	+1	555967..556380	+	137	82750253	rpsL	SAB0496	-	30S ribosomal protein S12
475	 38.43	+1	556446..556916	+	156	82750254	rpsG	SAB0497	-	30S ribosomal protein S7
476	 39.10	+1	557039..559120	+	693	82750255	fus	SAB0498	-	elongation factor G
477	 40.51	+2	559337..560521	+	394	82750256	tuf	SAB0499	-	elongation factor Tu
478	 35.03	0	560803..561978	-	391	82750257	-	SAB0500c	-	N-acyl-L-amino acid amidohydrolase
479	 33.92	0	562149..563336	+	395	82750258	kbl	SAB0501	-	2-amino-3-ketobutyrate coenzyme A ligase
480	 34.58	0	563603..564481	+	292	82750259	-	SAB0502	-	chaperone protein HchA
481	 32.72	0	564640..566277	+	545	82750260	-	SAB0503	-	ribulokinase
482	 35.09	0	566491..567456	+	321	82750261	-	SAB0504	-	L-threonine 3-dehydrogenase
483	 35.00	0	567791..568867	+	358	82750262	-	SAB0505	-	branched-chain amino acid aminotransferase
484	 34.06	0	569118..569801	+	227	82750263	-	SAB0506	-	hypothetical protein
485	 31.52	0	569917..570579	-	220	82750264	-	SAB0507c	-	deoxypurine kinase subunit
486	 26.38	-2	570572..571189	-	205	82750265	-	SAB0508c	-	deoxypurine kinase subunit
487	 33.79	0	571874..572743	+	289	82750266	-	SAB0510	-	hypothetical protein
488	 30.69	0	572763..573329	+	188	82750267	-	SAB0511	-	hypothetical protein
489	 33.69	0	577061..580402	+	1113	82750268	-	SAB0513	-	Ser-Asp rich fibrinogen-binding/bone sialoprotein-binding protein
490	 30.89	0	580521..581993	+	490	82750269	-	SAB0514	-	poly(glycerol-phosphate) alpha-glucosyltransferase
491	 30.72	0	582117..583610	-	497	82750270	-	SAB0515c	-	poly(glycerol-phosphate) alpha-glucosyltransferase
492	 34.81	0	583893..584771	-	292	82750271	-	SAB0516c	-	putative GTP cyclohydrolase
493	 36.04	0	584784..585449	-	221	82750272	-	SAB0517c	-	hypothetical protein
494	 34.72	0	585463..585822	-	119	82750273	-	SAB0518c	-	hypothetical protein
495	 34.12	0	586101..586859	+	252	82750274	-	SAB0519	-	glucosamine-6-phosphate deaminase
496	 34.60	0	586936..587568	+	210	82750275	-	SAB0520	-	3-hexulose-6-phosphate synthase
497	 36.79	+1	587570..588118	+	182	82750276	-	SAB0521	-	6-phospho-3-hexuloisomerase
498	 34.88	0	588231..588878	+	215	82750277	-	SAB0522	-	hypothetical protein
499	 34.33	0	589380..590780	+	466	82750278	proP	SAB0523	-	proline/betaine transporter
500	 28.64	-1	591030..591242	+	70	82750279	-	SAB0524	-	hypothetical protein
501	 32.03	0	591323..592699	+	458	82750280	-	SAB0525	-	long chain fatty acid CoA ligase
502	 38.25	+1	592701..593840	+	379	82750281	-	SAB0526	-	acetyl-CoA c-acetyltransferase
503	 32.51	0	593815..594180	+	121	82750282	-	SAB0527	-	hypothetical protein
504	 31.54	0	594183..594461	+	92	82750283	-	SAB0528	-	hypothetical protein
505	 29.76	0	594652..594819	-	55	82750284	-	SAB0529c	-	hypothetical protein
506	 37.91	+1	595352..596182	-	276	82750285	-	SAB0530c	-	phosphomethylpyrimidine kinase
507	 35.01	0	596366..597022	+	218	82750286	ung	SAB0531	-	uracil-DNA glycosylase
508	 35.96	0	597023..597403	+	126	82750287	-	SAB0532	-	hypothetical protein
509	 33.06	0	597536..597904	+	122	82750288	-	SAB0533	-	hypothetical protein
510	 35.76	0	598025..599509	+	494	82750289	-	SAB0534	-	amino acid transporter
511	 35.32	0	599651..600103	-	150	82750290	-	SAB0535c	-	hypothetical protein
512	 36.47	+1	600116..600880	-	254	82750291	-	SAB0536c	-	hypothetical protein
513	 33.86	0	601427..602179	-	250	82750292	-	SAB0537c	-	putative heme peroxidase
514	 36.47	+1	602347..603333	+	328	82750293	eutD	SAB0538	-	phosphotransacetylase
515	 33.81	0	603336..604172	+	278	82750294	-	SAB0539	-	lipoate-protein ligase A protein
516	 38.11	+1	604759..605679	+	306	82750295	mvaK1	SAB0540	-	mevalonate kinase
517	 36.99	+1	605684..606667	+	327	82750296	mvaD	SAB0541	-	mevalonate diphosphate decarboxylase
518	 33.52	0	606680..607756	+	358	82750297	mvaK2	SAB0542	-	phosphomevalonate kinase
519	 35.09	0	607933..608274	+	113	82750298	-	SAB0543	-	hypothetical protein
520	 34.92	0	608326..609648	-	440	82750299	-	SAB0544c	-	mercury(II) reductase
521	 32.20	0	609635..610075	-	146	82750300	-	SAB0545c	-	hypothetical protein
522	 34.76	0	610699..612096	+	465	82750301	-	SAB0546	-	hypothetical protein
523	 25.87	-2	612100..612729	+	209	82750302	-	SAB0547	-	hypothetical protein
524	 26.83	-1	613195..613824	+	209	82750303	-	SAB0548	-	hypothetical protein
525	 23.68	-2	614042..614590	+	182	82750304	-	SAB0549	-	hypothetical protein
526	 25.78	-2	614627..615169	+	180	82750305	-	SAB0550	-	hypothetical protein
527	 25.84	-2	615494..616120	+	208	82750306	-	SAB0551	-	hypothetical protein
528	 34.61	0	616390..617328	+	312	82750307	-	SAB0552	-	oxidoreductase
529	 34.82	0	617538..618074	+	178	82750308	-	SAB0553	-	hypothetical protein
530	 31.45	0	618243..618719	+	158	82750309	-	SAB0554	-	hypothetical protein
531	 32.87	0	618759..620054	+	431	82750310	-	SAB0555	-	hypothetical protein
532	 32.74	0	620097..620603	+	168	82750311	-	SAB0556	-	hypothetical protein
533	 36.20	0	621102..622112	+	336	82750312	adhA	SAB0557	-	alcohol dehydrogenase
534	 31.70	0	622375..622803	+	142	82750313	-	SAB0558	-	hypothetical protein
535	 33.09	0	622800..624461	+	553	82750314	argS	SAB0559	-	arginyl-tRNA synthetase
33.03	MEAN

3.30	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.