IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.03 STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
383	 38.73	+1	439377..442082	+	901	82750161	-	SAB0403	-	hypothetical protein
384	 33.33	0	442244..442606	+	120	82750162	-	SAB0404	-	hypothetical protein
385	 27.38	-1	442835..443170	-	111	82750163	-	SAB0405c	-	hypothetical protein
386	 33.78	0	443289..443963	+	224	82750164	-	SAB0406	-	hypothetical protein
387	 33.74	0	444000..444734	+	244	82750165	-	SAB0407	-	hypothetical protein
388	 34.53	0	445139..446479	+	446	82750166	-	SAB0408	-	sodium-dependent transporter
389	 38.73	+1	446675..447601	+	308	82750167	-	SAB0409	-	cysteine synthase
390	 35.70	0	447594..448736	+	380	82750168	-	SAB0410	-	cystathionine gamma-synthase
391	 34.99	0	449031..450056	+	341	82750169	-	SAB0411	-	ABC transporter ATP-binding protein
392	 36.67	+1	450060..450719	+	219	82750170	-	SAB0412	-	ABC transporter ATP-binding protein
393	 32.86	0	450756..451598	+	280	82750171	-	SAB0413	-	membrane lipoprotein
394	 36.31	0	451931..452938	+	335	82750172	-	SAB0414	-	autolysin
395	 32.96	0	453125..453394	-	89	82750173	-	SAB0415c	-	hypothetical protein
396	 34.57	0	453535..453939	+	134	82750174	-	SAB0416	-	hypothetical protein
397	 35.60	0	453929..454414	+	161	82750175	-	SAB0417	-	hypothetical protein
398	 32.57	0	454583..455365	-	260	82750176	-	SAB0418c	-	hypothetical protein
399	 33.51	0	455362..456480	-	372	82750177	-	SAB0419c	-	hypothetical protein
400	 32.43	0	456595..457479	-	294	82750178	-	SAB0420c	-	transcriptional activator of glutamate synthase operon
401	 37.62	+1	457660..462159	+	1499	82750179	gltA	SAB0421	-	glutamate synthase large subunit
402	 38.32	+1	462177..463640	+	487	82750180	gltD	SAB0422	-	glutamate synthase subunit beta
403	 37.54	+1	464475..465902	+	475	82750181	-	SAB0423	-	PTS system trehalose-specific IIBC component
404	 36.14	0	465966..467606	+	546	82750182	-	SAB0424	-	alpha-glucosidase
405	 33.76	0	467652..468359	+	235	82750183	-	SAB0425	-	trehalose operon transcriptional repressor
406	 33.52	0	469000..469524	+	174	82750184	-	SAB0426	-	acetyltransferase family protein
407	 36.22	0	469593..471290	+	565	82750185	dnaX	SAB0427	-	DNA polymerase III gamma and tau subunits
408	 39.62	+1	471380..471697	+	105	82750186	-	SAB0428	-	hypothetical protein
409	 36.18	0	471704..472300	+	198	82750187	recR	SAB0429	-	recombination protein RecR
410	 32.44	0	478882..480219	+	445	82750188	-	SAB0430	-	lysine decarboxylase
411	 33.17	0	480221..480838	+	205	82750189	tmk	SAB0431	-	thymidylate kinase
412	 37.27	+1	480866..481195	+	109	82750190	-	SAB0432	-	hypothetical protein
413	 30.74	0	481409..482335	+	308	82750191	holB	SAB0433	-	DNA polymerase III delta prime subunit
414	 33.08	0	482336..483139	+	267	82750192	-	SAB0434	-	signal peptidase II
415	 32.18	0	483156..483503	+	115	82750193	-	SAB0435	-	DNA replication intiation control protein YabA
416	 33.33	0	483777..484502	+	241	82750194	-	SAB0436	-	hypothetical protein
417	 33.73	0	484495..484743	+	82	82750195	-	SAB0437	-	hypothetical protein
418	 35.48	0	484745..485584	+	279	82750196	-	SAB0438	-	tetrapyrrole methylase family protein
419	 33.94	0	485869..487842	+	657	82750197	metG	SAB0439	-	methionyl-tRNA synthetase
420	 36.43	+1	487873..488646	+	257	82750198	-	SAB0440	-	sec-independent hydrolase
421	 35.75	0	488813..489349	+	178	82750199	-	SAB0441	-	hypothetical protein
422	 32.46	0	489342..490253	+	303	82750200	ksgA	SAB0442	-	dimethyladenosine transferase
423	 32.58	0	490353..490616	+	87	82750201	-	SAB0443	-	hypothetical protein
424	 34.98	0	490926..491774	+	282	82750202	-	SAB0444	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
425	 32.36	0	491788..492612	+	274	82750203	purR	SAB0445	-	purine operon repressor
426	 33.33	0	492629..493009	+	126	82750204	yabJ	SAB0446	-	translation initiation inhibitor
427	 36.63	+1	493081..493383	+	100	82750205	spoVG	SAB0447	-	regulatory protein SpoVG
428	 39.07	+1	493720..495078	+	452	82750206	gcaD	SAB0448	-	UDP-N-acetylglucosamine pyrophosphorylase
429	 35.20	0	495225..496190	+	321	82750207	prs	SAB0449	-	ribose-phosphate pyrophosphokinase
430	 37.61	+1	496340..496993	+	217	82750208	prs	SAB0450	-	50S ribosomal protein L25/general stress protein Ctc
431	 32.98	0	497304..497876	+	190	82750209	-	SAB0451	-	peptidyl-tRNA hydrolase
432	 34.16	0	497876..501382	+	1168	82750210	-	SAB0452	-	transcription-repair coupling factor
433	 33.14	0	501372..502898	+	508	82750211	-	SAB0453	-	membrane spanning protein
434	 35.01	0	502898..504091	+	397	82750212	-	SAB0454	-	tetrapyrrole methylase
435	 34.85	0	504088..504351	+	87	82750213	-	SAB0455	-	hypothetical protein
436	 33.08	0	504369..504761	+	130	82750214	-	SAB0456	-	hypothetical protein
437	 33.83	0	504866..505267	+	133	82750215	-	SAB0457	-	hypothetical protein
438	 30.79	0	505447..506742	+	431	82750216	-	SAB0458	-	hypothetical protein
439	 30.74	0	506747..507286	+	179	82750217	hpt	SAB0459	-	hypoxanthine-guanine phosphoribosyltransferase
440	 35.63	0	507544..509637	+	697	82750218	ftsH	SAB0460	-	cell division protein
441	 36.62	+1	510107..510988	+	293	82750219	-	SAB0461	-	heat shock chaperonin protein 33
442	 37.51	+1	511167..512099	+	310	82750220	-	SAB0462	-	cysteine synthase
443	 36.94	+1	512315..513118	+	267	82750221	folP	SAB0463	-	dihydropteroate synthase
444	 35.52	0	513096..513461	+	121	82750222	folB	SAB0464	-	dihydroneopterin aldolase
445	 33.75	0	513458..513934	+	158	82750223	folK	SAB0465	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
446	 34.81	0	514473..515960	+	495	82750224	lysS	SAB0466	-	lysyl-tRNA synthetase
447	 29.36	-1	524654..526036	-	460	82750225	-	SAB0468c	-	GntR family transcriptional regulator
448	 39.50	+1	526153..527028	+	291	82750226	-	SAB0469	-	pyridoxine biosynthesis protein
449	 33.69	0	527032..527592	+	186	82750227	-	SAB0470	-	glutamine amidotransferase subunit PdxT
450	 33.25	0	527800..529014	-	404	82750228	nupC	SAB0471c	-	pyrimidine nucleoside transport protein
451	 31.60	0	529172..529633	+	153	82750229	-	SAB0472	-	transcriptional repressor of stress genes
452	 33.86	0	529652..530218	+	188	82750230	-	SAB0473	-	hypothetical protein
453	 32.34	0	530208..531215	+	335	82750231	-	SAB0474	-	ATP:guanido phosphotransferase
454	 34.19	0	531229..533685	+	818	82750232	clpC	SAB0475	-	endopeptidase
455	 37.07	+1	534176..535540	+	454	82750233	radA	SAB0476	-	DNA repair protein RadA
456	 30.45	0	535565..536638	+	357	82750234	-	SAB0477	-	hypothetical protein
457	 34.23	0	537195..538649	+	484	82750235	gltX	SAB0478	-	glutamyl-tRNA synthetase
458	 35.49	0	539073..539720	+	215	82750236	cysE	SAB0479	-	serine acetyltransferase
459	 32.76	0	539704..541104	+	466	82750237	cysS	SAB0480	-	cysteinyl-tRNA synthetase
460	 31.60	0	541097..541501	+	134	82750238	-	SAB0481	-	hypothetical protein
461	 35.21	0	541509..542255	+	248	82750239	-	SAB0482	-	tRNA/rRNA methyltransferase
462	 33.33	0	542255..542779	+	174	82750240	-	SAB0483	-	hypothetical protein
463	 28.07	-1	542860..543429	+	189	82750241	-	SAB0484	-	hypothetical protein
464	 32.64	0	543544..543687	+	47	82750242	rpmG	SAB0485	-	50S ribosomal protein L33
465	 28.96	-1	543743..543925	+	60	82750243	secE	SAB0486	-	preprotein translocase subunit SecE
466	 35.52	0	543938..544486	+	182	82750244	nusG	SAB0487	-	transcription antitermination protein
467	 38.53	+1	544667..545089	+	140	82750245	rplK	SAB0488	-	50S ribosomal protein L11
468	 36.51	+1	545297..545989	+	230	82750246	rplA	SAB0489	-	50S ribosomal protein L1
469	 37.13	+1	546261..546761	+	166	82750247	rplJ	SAB0490	-	50S ribosomal protein L10
470	 33.83	0	547344..547952	+	202	82750249	-	SAB0492	-	hypothetical protein
471	 37.73	+1	548167..551718	+	1183	82750250	rpoB	SAB0493	-	DNA-directed RNA polymerase subunit beta
472	 36.15	0	551855..555478	+	1207	82750251	rpoC	SAB0494	-	DNA-directed RNA polymerase subunit beta'
473	 31.85	0	555600..555869	+	89	82750252	-	SAB0495	-	putative ribosomal protein L7Ae-like
474	 37.44	+1	555967..556380	+	137	82750253	rpsL	SAB0496	-	30S ribosomal protein S12
475	 38.43	+1	556446..556916	+	156	82750254	rpsG	SAB0497	-	30S ribosomal protein S7
476	 39.10	+1	557039..559120	+	693	82750255	fus	SAB0498	-	elongation factor G
477	 40.51	+2	559337..560521	+	394	82750256	tuf	SAB0499	-	elongation factor Tu
478	 35.03	0	560803..561978	-	391	82750257	-	SAB0500c	-	N-acyl-L-amino acid amidohydrolase
479	 33.92	0	562149..563336	+	395	82750258	kbl	SAB0501	-	2-amino-3-ketobutyrate coenzyme A ligase
480	 34.58	0	563603..564481	+	292	82750259	-	SAB0502	-	chaperone protein HchA
481	 32.72	0	564640..566277	+	545	82750260	-	SAB0503	-	ribulokinase
482	 35.09	0	566491..567456	+	321	82750261	-	SAB0504	-	L-threonine 3-dehydrogenase
33.03	MEAN

3.30	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.