IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.03 STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
336	 35.05	0	395952..396593	+	213	82750114	-	SAB0353	-	pathogenicity island protein
337	 32.75	0	396940..397281	+	113	82750115	-	SAB0354	-	pathogenicity island protein
338	 29.71	-1	397293..397871	+	192	82750116	-	SAB0355	-	pathogenicity island protein
339	 28.77	-1	397889..398107	+	72	82750117	-	SAB0356	-	pathogenicity island protein
340	 32.29	0	398110..398685	+	191	82750118	-	SAB0357	-	pathogenicity island protein
341	 30.12	0	398688..399029	+	113	82750119	-	SAB0358	-	pathogenicity island protein
342	 36.67	+1	399026..399595	+	189	82750120	-	SAB0359	-	pathogenicity island protein
343	 31.49	0	399750..400454	-	234	82750121	tsst-1	SAB0360c	-	toxic shock syndrome toxin-1
344	 34.19	0	400915..401265	+	116	82750122	-	SAB0361	-	pathogenicity island protein
345	 38.40	+1	401383..401895	+	170	82750123	-	SAB0362	-	pathogenicity island protein
346	 29.78	0	402652..403467	+	271	82750124	sec-bov	SAB0363	-	staphylococcal enterotoxin C-bovine
347	 28.49	-1	403634..404356	-	240	82750125	sel	SAB0364c	-	staphylococcal enterotoxin L
348	 26.97	-1	404861..405253	-	130	82750126	-	SAB0365c	-	hypothetical protein
349	 26.37	-2	405878..406078	-	66	82750127	-	SAB0367c	-	hypothetical protein
350	 38.26	+1	406679..406942	+	87	82750128	-	SAB0368	-	hypothetical protein
351	 28.03	-1	407602..408186	-	194	82750129	-	SAB0369c	-	hypothetical protein
352	 28.57	-1	408432..408599	+	55	82750130	-	SAB0370	-	hypothetical protein
353	 28.43	-1	408681..409088	+	135	82750131	-	SAB0371	-	hypothetical protein
354	 32.71	0	409135..409617	+	160	82750132	-	SAB0372	-	hypothetical protein
355	 31.94	0	410029..410388	-	119	82750133	-	SAB0373c	-	hypothetical protein
356	 35.61	0	410464..411252	-	262	82750134	-	SAB0374c	-	hypothetical protein
357	 29.50	-1	411321..411581	-	86	82750135	-	SAB0375c	-	hypothetical protein
358	 31.42	0	411724..412404	+	226	82750136	set11	SAB0376	-	superantigen-like protein
359	 29.60	-1	412692..413387	+	231	82750137	set10	SAB0377	-	superantigen-like protein
360	 34.67	0	413678..414724	+	348	82750138	set9	SAB0378	-	superantigen-like protein
361	 30.57	0	415089..415739	+	216	82750139	set7	SAB0379	-	superantigen-like protein 5
362	 31.32	0	416237..416932	+	231	82750140	set5	SAB0380	-	superantigen-like protein 7
363	 28.76	-1	417271..417969	+	232	82750141	set4	SAB0381	-	superantigen-like protein
364	 28.76	-1	418346..419044	+	232	82750142	set3	SAB0382	-	superantigen-like protein
365	 30.91	0	419410..420069	+	219	82750143	set2	SAB0383	-	superantigen-like protein
366	 37.89	+1	420356..421912	+	518	82750144	hsdM	SAB0384	-	type I site-specific deoxyribonuclease
367	 30.32	0	423535..424230	+	231	82750145	set1	SAB0386	-	superantigen-like protein
368	 31.35	0	424252..425760	+	502	82750146	-	SAB0387	-	hypothetical protein
369	 34.95	0	425869..426177	-	102	82750147	-	SAB0388c	-	hypothetical protein
370	 26.69	-1	426542..427324	+	260	82750148	-	SAB0389	-	lipoprotein
371	 30.19	0	427372..427785	+	137	82750149	-	SAB0390	-	lipoprotein
372	 25.62	-2	427791..428153	+	120	82750150	-	SAB0391	-	hypothetical protein
373	 30.92	0	428201..428986	+	261	82750151	-	SAB0392	-	hypothetical protein
374	 30.22	0	429014..429784	+	256	82750152	-	SAB0393	-	hypothetical protein
375	 28.93	-1	429813..430607	+	264	82750153	-	SAB0394	-	hypothetical protein
376	 29.86	0	430677..431453	+	258	82750154	-	SAB0395	-	hypothetical protein
377	 31.05	0	431654..432442	+	262	82750155	-	SAB0396	-	hypothetical protein
378	 30.62	0	432435..433760	+	441	82750156	-	SAB0397	-	hypothetical protein
379	 26.85	-1	433757..434080	+	107	82750157	-	SAB0398	-	hypothetical protein
380	 30.26	0	434713..434907	-	64	82750158	-	SAB0400c	-	hypothetical protein
381	 36.74	+1	435092..436294	+	400	82750159	-	SAB0401	-	hypothetical protein
382	 37.10	+1	437880..439364	+	494	82750160	-	SAB0402	-	NADH dehydrogenase subunit 5
383	 38.73	+1	439377..442082	+	901	82750161	-	SAB0403	-	hypothetical protein
384	 33.33	0	442244..442606	+	120	82750162	-	SAB0404	-	hypothetical protein
385	 27.38	-1	442835..443170	-	111	82750163	-	SAB0405c	-	hypothetical protein
386	 33.78	0	443289..443963	+	224	82750164	-	SAB0406	-	hypothetical protein
387	 33.74	0	444000..444734	+	244	82750165	-	SAB0407	-	hypothetical protein
388	 34.53	0	445139..446479	+	446	82750166	-	SAB0408	-	sodium-dependent transporter
389	 38.73	+1	446675..447601	+	308	82750167	-	SAB0409	-	cysteine synthase
390	 35.70	0	447594..448736	+	380	82750168	-	SAB0410	-	cystathionine gamma-synthase
391	 34.99	0	449031..450056	+	341	82750169	-	SAB0411	-	ABC transporter ATP-binding protein
392	 36.67	+1	450060..450719	+	219	82750170	-	SAB0412	-	ABC transporter ATP-binding protein
393	 32.86	0	450756..451598	+	280	82750171	-	SAB0413	-	membrane lipoprotein
394	 36.31	0	451931..452938	+	335	82750172	-	SAB0414	-	autolysin
395	 32.96	0	453125..453394	-	89	82750173	-	SAB0415c	-	hypothetical protein
396	 34.57	0	453535..453939	+	134	82750174	-	SAB0416	-	hypothetical protein
397	 35.60	0	453929..454414	+	161	82750175	-	SAB0417	-	hypothetical protein
398	 32.57	0	454583..455365	-	260	82750176	-	SAB0418c	-	hypothetical protein
399	 33.51	0	455362..456480	-	372	82750177	-	SAB0419c	-	hypothetical protein
400	 32.43	0	456595..457479	-	294	82750178	-	SAB0420c	-	transcriptional activator of glutamate synthase operon
401	 37.62	+1	457660..462159	+	1499	82750179	gltA	SAB0421	-	glutamate synthase large subunit
402	 38.32	+1	462177..463640	+	487	82750180	gltD	SAB0422	-	glutamate synthase subunit beta
403	 37.54	+1	464475..465902	+	475	82750181	-	SAB0423	-	PTS system trehalose-specific IIBC component
404	 36.14	0	465966..467606	+	546	82750182	-	SAB0424	-	alpha-glucosidase
405	 33.76	0	467652..468359	+	235	82750183	-	SAB0425	-	trehalose operon transcriptional repressor
406	 33.52	0	469000..469524	+	174	82750184	-	SAB0426	-	acetyltransferase family protein
407	 36.22	0	469593..471290	+	565	82750185	dnaX	SAB0427	-	DNA polymerase III gamma and tau subunits
408	 39.62	+1	471380..471697	+	105	82750186	-	SAB0428	-	hypothetical protein
409	 36.18	0	471704..472300	+	198	82750187	recR	SAB0429	-	recombination protein RecR
410	 32.44	0	478882..480219	+	445	82750188	-	SAB0430	-	lysine decarboxylase
411	 33.17	0	480221..480838	+	205	82750189	tmk	SAB0431	-	thymidylate kinase
412	 37.27	+1	480866..481195	+	109	82750190	-	SAB0432	-	hypothetical protein
413	 30.74	0	481409..482335	+	308	82750191	holB	SAB0433	-	DNA polymerase III delta prime subunit
414	 33.08	0	482336..483139	+	267	82750192	-	SAB0434	-	signal peptidase II
415	 32.18	0	483156..483503	+	115	82750193	-	SAB0435	-	DNA replication intiation control protein YabA
416	 33.33	0	483777..484502	+	241	82750194	-	SAB0436	-	hypothetical protein
417	 33.73	0	484495..484743	+	82	82750195	-	SAB0437	-	hypothetical protein
418	 35.48	0	484745..485584	+	279	82750196	-	SAB0438	-	tetrapyrrole methylase family protein
419	 33.94	0	485869..487842	+	657	82750197	metG	SAB0439	-	methionyl-tRNA synthetase
420	 36.43	+1	487873..488646	+	257	82750198	-	SAB0440	-	sec-independent hydrolase
421	 35.75	0	488813..489349	+	178	82750199	-	SAB0441	-	hypothetical protein
422	 32.46	0	489342..490253	+	303	82750200	ksgA	SAB0442	-	dimethyladenosine transferase
423	 32.58	0	490353..490616	+	87	82750201	-	SAB0443	-	hypothetical protein
424	 34.98	0	490926..491774	+	282	82750202	-	SAB0444	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
425	 32.36	0	491788..492612	+	274	82750203	purR	SAB0445	-	purine operon repressor
426	 33.33	0	492629..493009	+	126	82750204	yabJ	SAB0446	-	translation initiation inhibitor
427	 36.63	+1	493081..493383	+	100	82750205	spoVG	SAB0447	-	regulatory protein SpoVG
428	 39.07	+1	493720..495078	+	452	82750206	gcaD	SAB0448	-	UDP-N-acetylglucosamine pyrophosphorylase
429	 35.20	0	495225..496190	+	321	82750207	prs	SAB0449	-	ribose-phosphate pyrophosphokinase
430	 37.61	+1	496340..496993	+	217	82750208	prs	SAB0450	-	50S ribosomal protein L25/general stress protein Ctc
431	 32.98	0	497304..497876	+	190	82750209	-	SAB0451	-	peptidyl-tRNA hydrolase
432	 34.16	0	497876..501382	+	1168	82750210	-	SAB0452	-	transcription-repair coupling factor
433	 33.14	0	501372..502898	+	508	82750211	-	SAB0453	-	membrane spanning protein
434	 35.01	0	502898..504091	+	397	82750212	-	SAB0454	-	tetrapyrrole methylase
435	 34.85	0	504088..504351	+	87	82750213	-	SAB0455	-	hypothetical protein
33.03	MEAN

3.30	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.