IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.03   STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
290	 34.01	0	355395..357623	-	742	82750067	metE1	SAB0306c	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
291	 36.26	0	357620..359461	-	613	82750068	metE2	SAB0307c	-	bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein
292	 38.24	+1	359430..360590	-	386	82750069	-	SAB0308c	-	cystathionine beta-lyase
293	 35.69	0	360587..361690	-	367	82750070	-	SAB0309c	-	cystathionine gamma-synthase
294	 32.45	0	361898..362236	+	112	82750071	-	SAB0310	-	hypothetical protein
295	 34.28	0	362354..363199	+	281	82750072	-	SAB0311	-	hypothetical protein
296	 31.18	0	363353..364234	+	293	82750073	-	SAB0312	-	hypothetical protein
297	 30.88	0	364264..364467	+	67	82750074	-	SAB0313	-	hypothetical protein
298	 35.70	0	364479..365576	+	365	82750075	-	SAB0314	-	translation-associated GTPase
299	 31.77	0	365662..365853	-	63	82750076	-	SAB0315c	-	hypothetical protein
300	 38.05	+1	366097..366393	+	98	82750077	rpsF	SAB0316	-	30S ribosomal protein S6
301	 38.10	+1	366414..366917	+	167	82750078	ssb	SAB0317	-	single-strand DNA-binding protein
302	 37.04	+1	366969..367211	+	80	82750079	rpsR	SAB0318	-	30S ribosomal protein S18
303	 28.40	-1	367487..368479	-	330	82750080	-	SAB0319c	-	hypothetical protein
304	 30.72	0	369384..369995	+	203	82750082	-	SAB0321	-	hypothetical protein
305	 32.25	0	370364..370732	+	122	82750083	-	SAB0322	-	hypothetical protein
306	 30.72	0	370912..371484	+	190	82750084	-	SAB0323	-	hypothetical protein
307	 28.03	-1	371622..371885	-	87	82750085	-	SAB0324c	-	hypothetical protein
308	 35.29	0	372178..372432	+	84	82750086	-	SAB0325	-	hypothetical protein
309	 32.13	0	372858..373439	+	193	82750087	-	SAB0326	-	hypothetical protein
310	 31.04	0	373505..373897	-	130	82750088	-	SAB0327c	-	hypothetical protein
311	 29.67	-1	374157..374783	-	208	82750089	-	SAB0328c	-	hypothetical protein
312	 32.65	0	374855..375148	-	97	82750090	-	SAB0329c	-	hypothetical protein
313	 37.40	+1	375227..376750	-	507	82750091	ahpF	SAB0330c	-	alkyl hydroperoxide reductase subunit F
314	 37.02	+1	376766..377335	-	189	82750092	ahpC	SAB0331c	-	alkyl hydroperoxide reductase subunit C
315	 37.70	+1	377827..378582	+	251	82750093	-	SAB0332	-	nitro/flavin reductase
316	 39.38	+1	378662..380050	-	462	82750094	-	SAB0333c	-	proton/sodium-glutamate symport protein
317	 32.54	0	380315..380692	-	125	82750095	-	SAB0334c	-	hypothetical protein
318	 37.10	+1	381031..381987	-	318	82750096	-	SAB0335c	-	hypothetical protein
319	 30.02	0	382105..382767	-	220	82750097	-	SAB0336c	-	hypothetical protein
320	 33.33	0	382910..383317	-	135	82750098	-	SAB0337c	-	hypothetical protein
321	 35.58	0	383830..384408	+	192	82750099	xpt	SAB0338	-	xanthine phosphoribosyltransferase
322	 35.86	0	384408..385676	+	422	82750100	pbuX	SAB0339	-	xanthine permease
323	 37.56	+1	385714..387180	+	488	82750101	guaB	SAB0340	-	inositol-monophosphate dehydrogenase
324	 37.16	+1	387205..388746	+	513	82750102	guaA	SAB0341	-	bifunctional GMP synthase/glutamine amidotransferase protein
325	 33.16	0	388840..389976	-	378	82750103	-	SAB0342c	-	integrase
326	 27.99	-1	390060..390845	-	261	82750104	-	SAB0343c	-	pathogenicity island protein
327	 27.63	-1	390962..391189	+	75	82750105	-	SAB0344	-	pathogenicity island protein
328	 33.72	0	391235..391495	+	86	82750106	-	SAB0345	-	pathogenicity island protein
329	 30.13	0	391542..391697	+	51	82750107	-	SAB0346	-	pathogenicity island protein
330	 27.94	-1	391682..391885	+	67	82750108	-	SAB0347	-	pathogenicity island protein
331	 30.47	0	391887..392270	+	127	82750109	-	SAB0348	-	pathogenicity island protein
332	 28.93	-1	392271..392588	+	105	82750110	-	SAB0349	-	pathogenicity island protein
333	 34.83	0	392652..393521	+	289	82750111	-	SAB0350	-	pathogenicity island protein
334	 33.10	0	393535..395244	+	569	82750112	-	SAB0351	-	pathogenicity island protein
335	 32.55	0	395575..395955	+	126	82750113	-	SAB0352	-	pathogenicity island protein
336	 35.05	0	395952..396593	+	213	82750114	-	SAB0353	-	pathogenicity island protein
337	 32.75	0	396940..397281	+	113	82750115	-	SAB0354	-	pathogenicity island protein
338	 29.71	-1	397293..397871	+	192	82750116	-	SAB0355	-	pathogenicity island protein
339	 28.77	-1	397889..398107	+	72	82750117	-	SAB0356	-	pathogenicity island protein
340	 32.29	0	398110..398685	+	191	82750118	-	SAB0357	-	pathogenicity island protein
341	 30.12	0	398688..399029	+	113	82750119	-	SAB0358	-	pathogenicity island protein
342	 36.67	+1	399026..399595	+	189	82750120	-	SAB0359	-	pathogenicity island protein
343	 31.49	0	399750..400454	-	234	82750121	tsst-1	SAB0360c	-	toxic shock syndrome toxin-1
344	 34.19	0	400915..401265	+	116	82750122	-	SAB0361	-	pathogenicity island protein
345	 38.40	+1	401383..401895	+	170	82750123	-	SAB0362	-	pathogenicity island protein
346	 29.78	0	402652..403467	+	271	82750124	sec-bov	SAB0363	-	staphylococcal enterotoxin C-bovine
347	 28.49	-1	403634..404356	-	240	82750125	sel	SAB0364c	-	staphylococcal enterotoxin L
348	 26.97	-1	404861..405253	-	130	82750126	-	SAB0365c	-	hypothetical protein
349	 26.37	-2	405878..406078	-	66	82750127	-	SAB0367c	-	hypothetical protein
350	 38.26	+1	406679..406942	+	87	82750128	-	SAB0368	-	hypothetical protein
351	 28.03	-1	407602..408186	-	194	82750129	-	SAB0369c	-	hypothetical protein
352	 28.57	-1	408432..408599	+	55	82750130	-	SAB0370	-	hypothetical protein
353	 28.43	-1	408681..409088	+	135	82750131	-	SAB0371	-	hypothetical protein
354	 32.71	0	409135..409617	+	160	82750132	-	SAB0372	-	hypothetical protein
355	 31.94	0	410029..410388	-	119	82750133	-	SAB0373c	-	hypothetical protein
356	 35.61	0	410464..411252	-	262	82750134	-	SAB0374c	-	hypothetical protein
357	 29.50	-1	411321..411581	-	86	82750135	-	SAB0375c	-	hypothetical protein
358	 31.42	0	411724..412404	+	226	82750136	set11	SAB0376	-	superantigen-like protein
359	 29.60	-1	412692..413387	+	231	82750137	set10	SAB0377	-	superantigen-like protein
360	 34.67	0	413678..414724	+	348	82750138	set9	SAB0378	-	superantigen-like protein
361	 30.57	0	415089..415739	+	216	82750139	set7	SAB0379	-	superantigen-like protein 5
362	 31.32	0	416237..416932	+	231	82750140	set5	SAB0380	-	superantigen-like protein 7
363	 28.76	-1	417271..417969	+	232	82750141	set4	SAB0381	-	superantigen-like protein
364	 28.76	-1	418346..419044	+	232	82750142	set3	SAB0382	-	superantigen-like protein
365	 30.91	0	419410..420069	+	219	82750143	set2	SAB0383	-	superantigen-like protein
366	 37.89	+1	420356..421912	+	518	82750144	hsdM	SAB0384	-	type I site-specific deoxyribonuclease
367	 30.32	0	423535..424230	+	231	82750145	set1	SAB0386	-	superantigen-like protein
368	 31.35	0	424252..425760	+	502	82750146	-	SAB0387	-	hypothetical protein
369	 34.95	0	425869..426177	-	102	82750147	-	SAB0388c	-	hypothetical protein
370	 26.69	-1	426542..427324	+	260	82750148	-	SAB0389	-	lipoprotein
371	 30.19	0	427372..427785	+	137	82750149	-	SAB0390	-	lipoprotein
372	 25.62	-2	427791..428153	+	120	82750150	-	SAB0391	-	hypothetical protein
373	 30.92	0	428201..428986	+	261	82750151	-	SAB0392	-	hypothetical protein
374	 30.22	0	429014..429784	+	256	82750152	-	SAB0393	-	hypothetical protein
375	 28.93	-1	429813..430607	+	264	82750153	-	SAB0394	-	hypothetical protein
376	 29.86	0	430677..431453	+	258	82750154	-	SAB0395	-	hypothetical protein
377	 31.05	0	431654..432442	+	262	82750155	-	SAB0396	-	hypothetical protein
378	 30.62	0	432435..433760	+	441	82750156	-	SAB0397	-	hypothetical protein
379	 26.85	-1	433757..434080	+	107	82750157	-	SAB0398	-	hypothetical protein
380	 30.26	0	434713..434907	-	64	82750158	-	SAB0400c	-	hypothetical protein
381	 36.74	+1	435092..436294	+	400	82750159	-	SAB0401	-	hypothetical protein
382	 37.10	+1	437880..439364	+	494	82750160	-	SAB0402	-	NADH dehydrogenase subunit 5
383	 38.73	+1	439377..442082	+	901	82750161	-	SAB0403	-	hypothetical protein
384	 33.33	0	442244..442606	+	120	82750162	-	SAB0404	-	hypothetical protein
385	 27.38	-1	442835..443170	-	111	82750163	-	SAB0405c	-	hypothetical protein
386	 33.78	0	443289..443963	+	224	82750164	-	SAB0406	-	hypothetical protein
387	 33.74	0	444000..444734	+	244	82750165	-	SAB0407	-	hypothetical protein
388	 34.53	0	445139..446479	+	446	82750166	-	SAB0408	-	sodium-dependent transporter
389	 38.73	+1	446675..447601	+	308	82750167	-	SAB0409	-	cysteine synthase
33.03	MEAN

3.30	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.